PHF23

General Information

Gene Name       : PHF23
Gene ID             : ENSG00000040633.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PHF23)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PHF23ENSG00000040633.1245.9257.7051.81ENCSR000AEF
HepG2PHF23ENSG00000040633.1231.1047.7639.43ENCSR985KAT
K562PHF23ENSG00000040633.1238.3458.8848.61ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PHF23 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PHF23 RNA is bound by 21 proteins.  







eCLIP assay for PHF23 is not avaliable on ENCORE database.





21 proteins are bound to PHF23 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1771407707140827-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.700765.90930HepG2AQR
chr1771384857138546-3'-UTR,intron-Distal,intron-Proximal3.643997.11596K562PUM2
chr1771400197140072-3'-UTR,CDS,intron-Distal4.417834.93465K562RBM15
chr1771384897138530-3'-UTR,intron-Distal,intron-Proximal4.235696.57313K562PABPC4
chr1771413737141406-5'-UTR,intron-Distal4.350154.01425K562AKAP8L
chr1771427177142807-5'-UTR,intron-Distal,intron-Proximal4.049713.01017K562CPSF6
chr1771413577141453-5'-UTR,intron-Distal5.3454716.98069HepG2FAM120A
chr1771426877142779-5'-UTR,intron-Distal,intron-Proximal4.697076.13547HepG2NCBP2
chr1771426827142764-5'-UTR,intron-Distal,intron-Proximal3.805545.08388K562UCHL5
chr1771413997141431-5'-UTR,intron-Distal4.087613.54095K562FAM120A
chr1771414667141512-5'-UTR,intron-Distal,intron-Proximal3.438394.25110K562CSTF2T
chr1771424997142601-5'-UTR,CDS,intron-Distal3.8698816.52960HepG2PRPF8
chr1771414687141526-5'-UTR,intron-Distal,intron-Proximal3.9295313.08437HepG2CSTF2T
chr1771413577141466-5'-UTR,intron-Distal5.3518622.96121HepG2CSTF2T
chr1771426077142745-5'-UTR,intron-Distal3.902843.32766HepG2SRSF7
chr1771427077142788-5'-UTR,intron-Distal,intron-Proximal3.6446010.41008HepG2CSTF2T
chr1771414667141533-5'-UTR,intron-Distal,intron-Proximal4.610415.83275HepG2PRPF4
chr1771413667141466-5'-UTR,intron-Distal3.395536.49835HepG2PRPF4
chr1771425597142656-5'-UTR,CDS,intron-Distal4.5326417.10515HepG2CSTF2T
chr1771427017142805-5'-UTR,intron-Distal,intron-Proximal4.7138116.23255K562GTF2F1
chr1771415627141604-5'-UTR,intron-Distal,intron-Proximal4.381305.40707K562CSTF2T
chr1771409027140952-5'-UTR,CDS,intron-Distal,intron-Proximal4.223289.78712K562AQR
chr1771414537141521-5'-UTR,intron-Distal,intron-Proximal4.3916015.22957HepG2FAM120A
chr1771415577141605-5'-UTR,intron-Distal,intron-Proximal6.0807413.21421HepG2FAM120A
chr1771409527140997-5'-UTR,CDS,intron-Distal,intron-Proximal3.278565.46476K562AQR
chr1771413517141470-5'-UTR,intron-Distal3.681633.01337HepG2GRSF1
chr1771414757141529-5'-UTR,intron-Distal,intron-Proximal4.359905.51270K562GTF2F1
chr1771427397142795-5'-UTR,intron-Distal,intron-Proximal4.5921715.43935HepG2FAM120A
chr1771415577141607-5'-UTR,intron-Distal,intron-Proximal5.7012714.90496HepG2CSTF2T
chr1771425597142671-5'-UTR,CDS,intron-Distal3.912139.18909HepG2PRPF4
chr1771409157141025-5'-UTR,CDS,intron-Distal,intron-Proximal4.7936918.77546HepG2AQR
chr1771418737141920-5'-UTR,intron-Distal,intron-Proximal4.250774.35952HepG2PRPF4
chr1771409027141007-5'-UTR,CDS,intron-Distal,intron-Proximal4.1757411.04001HepG2BUD13
chr1771421387142225-5'-UTR,intron-Distal,intron-Proximal5.007448.13169HepG2PRPF4
chr1771427157142783-5'-UTR,intron-Distal,intron-Proximal3.611657.51684K562CSTF2T
chr1771427097142806-5'-UTR,intron-Distal,intron-Proximal5.7551616.22098HepG2PRPF4
chr1771409587141031-5'-UTR,CDS,intron-Distal,intron-Proximal4.472877.82456K562SF3B4
chr1771421737142239-5'-UTR,intron-Distal,intron-Proximal4.1108510.76180HepG2CSTF2T
chr1771425237142573-5'-UTR,CDS,intron-Distal5.1628113.91734HepG2AQR
chr1771425427142568-5'-UTR,CDS,intron-Distal3.981347.79506K562AQR
chr1771413787141440-5'-UTR,intron-Distal3.726554.41402K562DROSHA
chr1771415557141604-5'-UTR,intron-Distal,intron-Proximal5.452837.03699K562GTF2F1
chr1771393967139518-CDS,intron-Distal,intron-Proximal3.820248.82687K562UCHL5
chr1771396167139658-CDS,intron-Distal,intron-Proximal3.685734.22136HepG2RBM15
chr1771394767139590-CDS,intron-Distal,intron-Proximal4.518784.10368HepG2TRA2A
chr1771397017139752-CDS,intron-Distal,intron-Proximal3.755845.13030K562RBM15
chr1771396097139666-CDS,intron-Distal,intron-Proximal4.657824.15208K562RBM15
chr1771393627139445-CDS,intron-Distal3.187845.63425HepG2BCLAF1
chr1771411517141241-intron-Distal,intron-Proximal4.879357.23918HepG2PRPF4
chr1771422887142374-intron-Distal,intron-Proximal3.972485.29296K562DROSHA
chr1771422737142361-intron-Distal,intron-Proximal4.778895.81141K562CSTF2T
chr1771412777141323-intron-Distal4.406335.01722K562CSTF2T
chr1771422817142352-intron-Distal,intron-Proximal3.8544113.08437HepG2CSTF2T
chr1771408927140927-intron-Distal,intron-Proximal4.605793.70131HepG2PRPF8
chr1771412507141349-intron-Distal4.9373224.02902HepG2CSTF2T
chr1771412627141331-intron-Distal4.5357813.00089HepG2FAM120A
chr1771422987142360-intron-Distal,intron-Proximal3.541618.40530HepG2FAM120A
chr1771417037141750-intron-Distal4.317925.23978HepG2PRPF4
chr1771423057142353-intron-Distal,intron-Proximal5.226575.54520K562GTF2F1
chr1771411787141226-intron-Distal,intron-Proximal4.574889.13646HepG2FAM120A
chr1771411367141234-intron-Distal,intron-Proximal6.3672622.77076HepG2CSTF2T
chr1771420577142097-intron-Distal,intron-Proximal4.154873.37414K562CSTF2T
chr1771416947141746-intron-Distal4.569915.28165K562CSTF2T
chr1771417057141740-intron-Distal3.918983.28464K562EWSR1
chr1771425217142542-intron-Distal5.461418.43521K562AQR
chr1771416957141753-intron-Distal5.6728110.58957HepG2CSTF2T
chr1771424147142463-intron-Distal3.859703.03048HepG2GTF2F1
chr1771422967142353-intron-Distal,intron-Proximal4.958028.56484HepG2PRPF4
chr1771416927141750-intron-Distal5.2107218.17241HepG2FAM120A
chr1771411497141231-intron-Distal,intron-Proximal4.237143.03048HepG2GTF2F1
chr1771420517142105-intron-Distal,intron-Proximal5.413939.60672HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PHF23 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PHF23 is not available on ENCORE database.

  • 82 RBPs can affect the levels of PHF23.  








The Knockdown/knockout RNA-Seq assay for PHF23 is not available on ENCORE database.





82 RBPs can affect the gene expression of PHF23 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PHF23ENSG00000040633.8895.80430523.697500.7743014.4940013.33470HepG2ACO1
PHF23ENSG00000040633.81111.42080727.126000.612004.710804.03960HepG2AKAP1
PHF23ENSG00000040633.8724.73500526.135400.461904.868903.87630HepG2AKAP8L
PHF23ENSG00000040633.81174.36120601.625700.9648012.6557011.08180HepG2ASCC1
PHF23ENSG00000040633.8789.58070566.119900.479902.540101.64520HepG2BCCIP
PHF23ENSG00000040633.81196.68660715.050700.742809.622308.59200HepG2BOP1
PHF23ENSG00000040633.8975.50730571.589000.771108.241306.96370HepG2CIRBP
PHF23ENSG00000040633.8643.63120523.556500.297802.409001.78020HepG2CKAP4
PHF23ENSG00000040633.8879.95690398.353001.143306.062004.92890HepG2CNOT7
PHF23ENSG00000040633.81064.50670758.600100.488706.426405.52480HepG2CELF1
PHF23ENSG00000040633.81099.82510696.510100.659006.106505.21190HepG2DDX3X
PHF23ENSG00000040633.8791.37570598.367400.403201.885601.36600HepG2DDX6
PHF23ENSG00000040633.8421.09230575.17470-0.449902.563601.99320HepG2EIF2S1
PHF23ENSG00000040633.8818.47450593.488500.463604.154802.73180HepG2EIF2S2
PHF23ENSG00000040633.8705.26480372.778700.919709.353107.78770HepG2EIF3D
PHF23ENSG00000040633.8551.33520426.882400.369002.377501.37650HepG2EIF3G
PHF23ENSG00000040633.81056.80580618.903300.771805.948604.96780HepG2EIF4B
PHF23ENSG00000040633.81367.55520971.853300.492707.548506.63730HepG2ETF1
PHF23ENSG00000040633.8688.40030511.721900.427803.248302.34360HepG2EWSR1
PHF23ENSG00000040633.81135.69010789.886100.523804.007403.09530HepG2FIP1L1
PHF23ENSG00000040633.8935.76230594.934200.653305.632204.69620HepG2G3BP1
PHF23ENSG00000040633.8612.89910420.165600.544603.482302.33000HepG2GNB2L1
PHF23ENSG00000040633.8541.13030744.20940-0.459702.714402.07890HepG2GPKOW
PHF23ENSG00000040633.8796.613001051.15510-0.400004.671303.76980HepG2HNRNPF
PHF23ENSG00000040633.8709.77310545.068100.380802.640201.70910HepG2HNRNPM
PHF23ENSG00000040633.8763.127301035.08850-0.439804.400003.50420HepG2IGF2BP1
PHF23ENSG00000040633.8812.47180604.723800.425902.751602.07780HepG2IGF2BP2
PHF23ENSG00000040633.81320.66480848.522500.638105.105803.96330HepG2LARP4
PHF23ENSG00000040633.8557.05950411.703800.436102.539901.45430HepG2LARP7
PHF23ENSG00000040633.8836.59280645.182100.374702.011601.46870HepG2MATR3
PHF23ENSG00000040633.8720.34650390.138700.884605.977004.47850HepG2METAP2
PHF23ENSG00000040633.81017.96830660.370000.624205.336204.47150HepG2NCBP2
PHF23ENSG00000040633.8479.26580629.70180-0.393802.147001.48500HepG2NSUN2
PHF23ENSG00000040633.8767.99850585.432500.391503.750603.06680HepG2PCBP1
PHF23ENSG00000040633.8415.30010308.280700.429802.612401.41930HepG2PKM
PHF23ENSG00000040633.8821.57070595.695700.463705.091504.39650HepG2PTBP1
PHF23ENSG00000040633.8561.78180772.08730-0.458803.663202.98910HepG2PUF60
PHF23ENSG00000040633.81050.85140819.609800.358404.666403.93870HepG2PUM1
PHF23ENSG00000040633.8653.41140533.415900.292602.318801.74200HepG2PUS1
PHF23ENSG00000040633.8852.38190672.518200.341802.612901.77720HepG2RBM15
PHF23ENSG00000040633.81561.08680812.300200.9424019.1313018.01900HepG2RBM22
PHF23ENSG00000040633.8798.77720496.459400.686005.718304.27760HepG2RBM27
PHF23ENSG00000040633.8578.40120403.148100.520702.578601.55620HepG2RCC2
PHF23ENSG00000040633.8897.18870662.955200.436403.778803.16530HepG2NELFE
PHF23ENSG00000040633.8895.062201132.33990-0.339202.355101.71680HepG2RPLP0
PHF23ENSG00000040633.8708.16140362.742300.9650012.3911011.20420HepG2RPS19
PHF23ENSG00000040633.8757.18800457.847200.725706.408705.22140HepG2RPS2
PHF23ENSG00000040633.8677.75020467.384100.536003.526302.30870HepG2RPS5
PHF23ENSG00000040633.8382.75270520.26170-0.442803.797003.06310HepG2SAFB2
PHF23ENSG00000040633.8527.47980364.049100.534903.593702.51810HepG2SERBP1
PHF23ENSG00000040633.81336.07280700.608500.931209.652908.33540HepG2SF3A3
PHF23ENSG00000040633.8769.02300620.202800.310202.204701.66840HepG2SF3B4
PHF23ENSG00000040633.8600.43960740.32170-0.302102.599401.91710HepG2SLBP
PHF23ENSG00000040633.8925.47220606.701500.6091010.462209.34220HepG2SMN1
PHF23ENSG00000040633.81057.15360782.193400.434502.096801.42000HepG2SNRNP70
PHF23ENSG00000040633.8881.08870647.354700.444604.919804.33570HepG2SRSF1
PHF23ENSG00000040633.8849.597001032.72250-0.281602.707102.01820HepG2SRSF7
PHF23ENSG00000040633.8732.41920526.655200.475705.385504.65980HepG2SRSF9
PHF23ENSG00000040633.8530.39560796.62460-0.586807.716906.94440HepG2SSB
PHF23ENSG00000040633.81144.36380866.973800.400405.457204.63760HepG2SUCLG1
PHF23ENSG00000040633.8739.55020554.089500.416401.981801.39520HepG2SUPV3L1
PHF23ENSG00000040633.8468.14810581.86000-0.313702.130701.62700HepG2TAF15
PHF23ENSG00000040633.81065.90310675.769100.657406.763405.79250HepG2U2AF1
PHF23ENSG00000040633.8897.94090423.657201.083603.457702.35070HepG2U2AF2
PHF23ENSG00000040633.8964.77340599.872100.6854011.3867010.30440HepG2UTP3
PHF23ENSG00000040633.8857.85530693.706900.306302.948802.25930HepG2ZC3H8
PHF23ENSG00000040633.8202.94200337.72090-0.734805.509104.75150K562AGGF1
PHF23ENSG00000040633.8156.44100232.13460-0.569303.206201.56240K562AKAP1
PHF23ENSG00000040633.81268.92400848.816700.580002.927902.32630K562AQR
PHF23ENSG00000040633.8572.59920745.39160-0.380502.762701.98120K562CPSF6
PHF23ENSG00000040633.81438.63670888.666000.694908.516007.45360K562DDX47
PHF23ENSG00000040633.8641.74460306.928401.0640015.9286013.95610K562EIF3G
PHF23ENSG00000040633.8407.96840245.714700.731405.636204.46890K562EIF4A3
PHF23ENSG00000040633.8314.49710221.271800.507103.154601.90330K562EIF4B
PHF23ENSG00000040633.81354.586501087.353300.316902.180001.34140K562EIF4G2
PHF23ENSG00000040633.8763.08860255.531601.5782035.5848033.54660K562FXR1
PHF23ENSG00000040633.8252.08140417.95020-0.729402.786301.56280K562HNRNPA2B1
PHF23ENSG00000040633.81045.95830682.391200.616104.145902.99070K562HNRNPM
PHF23ENSG00000040633.8257.33360372.94720-0.535302.889102.04350K562KIF1C
PHF23ENSG00000040633.8470.08080339.719400.468503.261002.25050K562MATR3
PHF23ENSG00000040633.8349.62020245.371700.510702.949301.68130K562NCBP2
PHF23ENSG00000040633.81096.55340733.886600.579203.330201.95480K562PABPC1
PHF23ENSG00000040633.8704.47830493.874300.512303.743802.87110K562PRPF8
PHF23ENSG00000040633.8664.82130330.745201.0071014.5996013.13820K562PTBP1
PHF23ENSG00000040633.8587.51050317.107000.889509.806308.06990K562RBM22
PHF23ENSG00000040633.8534.53990333.713300.679604.603603.15320K562NELFE
PHF23ENSG00000040633.8663.78680503.116400.399702.207201.48090K562RPS19
PHF23ENSG00000040633.8436.45510208.184001.067902.223101.33480K562RPS3
PHF23ENSG00000040633.8959.84980733.738500.387403.727402.78860K562SF3A3
PHF23ENSG00000040633.8389.99920197.569100.9810010.317608.61810K562SF3B4
PHF23ENSG00000040633.8603.12700324.248400.8953010.432809.07380K562SRSF1
PHF23ENSG00000040633.8305.75890200.918200.605703.081201.95620K562SRSF4
PHF23ENSG00000040633.8537.89210678.03260-0.334002.795301.62360K562SRSF7
PHF23ENSG00000040633.81145.92630704.746400.701207.651406.27490K562SYNCRIP
PHF23ENSG00000040633.8666.85940328.143601.0230012.3672010.68200K562TARDBP
PHF23ENSG00000040633.8468.74430674.70690-0.525504.637603.48940K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PHF23 is not available on ENCORE database.





1 RBPs can affect the splicing of PHF23 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSPHF23ENSG00000040633.8chr17-7139935714015371399357140086714070371407960.161000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PHF23 is not avaliable on ENCORE database.