NGFRAP1

General Information

Gene Name       : NGFRAP1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NGFRAP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NGFRAP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NGFRAP1 RNA is bound by 7 proteins.  







eCLIP assay for NGFRAP1 is not avaliable on ENCORE database.





7 proteins are bound to NGFRAP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX102632809102632912+3'-UTR3.956003.19379HepG2AKAP1
chrX102632857102632889+3'-UTR6.2976526.00513HepG2DDX55
chrX102632769102632908+3'-UTR5.3432338.17135HepG2LARP4
chrX102632804102632857+3'-UTR5.6603523.94243HepG2DDX55
chrX102632419102632490+3'-UTR,CDS,intron-Proximal4.526883.71570HepG2BCLAF1
chrX102632889102632903+3'-UTR5.678226.52715HepG2DDX55
chrX102632385102632477+3'-UTR,5'-UTR,CDS,intron-Proximal4.417244.27476HepG2AQR
chrX102631470102631542+5'-UTR,intron-Proximal5.143685.35746HepG2DDX3X
chrX102631960102632016+5'-UTR,intron-Distal4.190234.82666HepG2DDX3X
chrX102632466102632544+CDS4.067117.27605HepG2GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NGFRAP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NGFRAP1 is not available on ENCORE database.

  • 94 RBPs can affect the levels of NGFRAP1.  








The Knockdown/knockout RNA-Seq assay for NGFRAP1 is not available on ENCORE database.





94 RBPs can affect the gene expression of NGFRAP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NGFRAP1ENSG00000166681.9998.75620752.559300.408202.780501.83600HepG2ABCF1
NGFRAP1ENSG00000166681.9734.26050574.870800.353003.368202.70780HepG2ACO1
NGFRAP1ENSG00000166681.91827.35240745.816101.2928020.1573018.85820HepG2AKAP1
NGFRAP1ENSG00000166681.9589.64240348.085300.760302.729001.69720HepG2AKAP8
NGFRAP1ENSG00000166681.9894.57460577.545800.631209.391908.08140HepG2AKAP8L
NGFRAP1ENSG00000166681.91060.08400617.079600.780608.336207.01950HepG2ASCC1
NGFRAP1ENSG00000166681.91342.623901142.433800.232802.256601.62520HepG2AUH
NGFRAP1ENSG00000166681.9332.00300603.11690-0.861207.570806.17150HepG2BCLAF1
NGFRAP1ENSG00000166681.9554.56090797.79470-0.524704.333503.60360HepG2BOP1
NGFRAP1ENSG00000166681.91418.301701048.625200.435602.648001.69820HepG2CCAR1
NGFRAP1ENSG00000166681.9448.66920586.27480-0.385902.080901.40400HepG2CIRBP
NGFRAP1ENSG00000166681.9966.16950574.714700.7493015.0992013.80500HepG2CKAP4
NGFRAP1ENSG00000166681.91239.93630299.471102.0497029.1161026.74030HepG2CNOT7
NGFRAP1ENSG00000166681.91017.11960732.426000.473602.899702.19800HepG2CPSF6
NGFRAP1ENSG00000166681.9445.27670619.85930-0.477203.303602.09440HepG2CPSF7
NGFRAP1ENSG00000166681.9650.31790428.714600.601004.809203.44160HepG2CSTF2
NGFRAP1ENSG00000166681.9977.37340531.658800.8783020.7495018.97430HepG2DDX19B
NGFRAP1ENSG00000166681.9370.12780516.95960-0.482003.231601.72320HepG2DDX28
NGFRAP1ENSG00000166681.91355.29020714.391200.9237011.7843010.57680HepG2DDX3X
NGFRAP1ENSG00000166681.9649.53880492.363000.399602.734001.38710HepG2DDX52
NGFRAP1ENSG00000166681.91142.85230682.499900.743606.407705.28950HepG2DDX55
NGFRAP1ENSG00000166681.9802.99950613.780800.387602.128801.57970HepG2DDX6
NGFRAP1ENSG00000166681.9371.67880489.83040-0.398202.352101.44920HepG2DHX30
NGFRAP1ENSG00000166681.9917.85660587.376200.643905.609704.33400HepG2EEF2
NGFRAP1ENSG00000166681.9356.28200651.90220-0.871607.779706.71020HepG2EIF4A3
NGFRAP1ENSG00000166681.9729.26190923.11350-0.340102.985202.12080HepG2EIF4G1
NGFRAP1ENSG00000166681.9972.17790561.723800.7913010.845609.22450HepG2EWSR1
NGFRAP1ENSG00000166681.9654.00600426.203100.617706.227104.43870HepG2FAM120A
NGFRAP1ENSG00000166681.91104.93670759.926800.539904.053903.13650HepG2FIP1L1
NGFRAP1ENSG00000166681.9813.16180564.922500.525402.980801.82390HepG2FUS
NGFRAP1ENSG00000166681.9952.59590610.212800.642505.492204.56820HepG2G3BP1
NGFRAP1ENSG00000166681.9547.93670424.495300.368202.112201.33410HepG2GEMIN5
NGFRAP1ENSG00000166681.91094.28060830.281100.398202.563201.94430HepG2GPKOW
NGFRAP1ENSG00000166681.9501.40350277.195600.855005.532603.95510HepG2GRSF1
NGFRAP1ENSG00000166681.9670.81130548.818100.289502.247901.36200HepG2HDGF
NGFRAP1ENSG00000166681.9899.13040512.742800.810209.967608.85190HepG2HNRNPA1
NGFRAP1ENSG00000166681.9785.784901087.18290-0.468405.999304.99700HepG2HNRNPF
NGFRAP1ENSG00000166681.91141.71380852.223300.421806.756905.74880HepG2HNRNPL
NGFRAP1ENSG00000166681.9497.33870792.35080-0.671905.861804.98100HepG2HNRNPLL
NGFRAP1ENSG00000166681.9704.76430524.379100.426403.346202.30710HepG2HNRNPM
NGFRAP1ENSG00000166681.9951.35390566.538000.7477013.7775012.51200HepG2HNRNPU
NGFRAP1ENSG00000166681.9637.59980378.945200.750605.263203.59270HepG2HSPD1
NGFRAP1ENSG00000166681.9785.501701070.57110-0.446704.323303.43510HepG2IGF2BP1
NGFRAP1ENSG00000166681.9988.33080582.182100.763403.040202.00800HepG2IGF2BP3
NGFRAP1ENSG00000166681.9934.83840578.704000.691805.245104.26230HepG2ILF2
NGFRAP1ENSG00000166681.9715.74680518.923300.463803.316602.07460HepG2LARP7
NGFRAP1ENSG00000166681.9501.04030658.12340-0.393402.193601.60750HepG2MAGOH
NGFRAP1ENSG00000166681.9987.38870661.782300.577204.304903.53450HepG2MATR3
NGFRAP1ENSG00000166681.9756.87800498.959600.601002.323701.35790HepG2METAP2
NGFRAP1ENSG00000166681.9252.29430615.13390-1.2858017.8270015.98910HepG2MSI2
NGFRAP1ENSG00000166681.9530.54090808.05290-0.607003.246202.19050HepG2MTPAP
NGFRAP1ENSG00000166681.91025.11210677.351000.597704.986704.14700HepG2NCBP2
NGFRAP1ENSG00000166681.9591.55090359.117000.719904.512202.68660HepG2NKRF
NGFRAP1ENSG00000166681.9751.38440560.806800.421904.178903.16230HepG2PARN
NGFRAP1ENSG00000166681.9451.42430617.39420-0.451704.185203.46600HepG2PCBP1
NGFRAP1ENSG00000166681.9384.48990530.57780-0.464603.891302.98910HepG2PRPF4
NGFRAP1ENSG00000166681.9795.72000562.076500.501402.562001.38540HepG2PRPF6
NGFRAP1ENSG00000166681.91138.16710628.220300.8573018.1194016.95110HepG2PTBP1
NGFRAP1ENSG00000166681.91167.27590940.178600.312004.182103.48510HepG2PUM1
NGFRAP1ENSG00000166681.9878.62170585.538600.585408.809207.81330HepG2PUS1
NGFRAP1ENSG00000166681.9200.39520680.38100-1.7635035.9172034.08690HepG2QKI
NGFRAP1ENSG00000166681.9323.66000515.85550-0.672502.990402.25960HepG2RAVER1
NGFRAP1ENSG00000166681.9996.84170781.518300.351002.233201.45250HepG2RBM15
NGFRAP1ENSG00000166681.91355.310601096.316200.305903.003102.46940HepG2RBM22
NGFRAP1ENSG00000166681.91137.33810625.744400.8619010.304408.37040HepG2RBM27
NGFRAP1ENSG00000166681.91384.91130699.150000.9860024.3670023.08000HepG2NELFE
NGFRAP1ENSG00000166681.9865.48800651.161200.410403.762203.05820HepG2RECQL
NGFRAP1ENSG00000166681.9855.579901171.06810-0.452903.820403.03800HepG2RPLP0
NGFRAP1ENSG00000166681.9671.87840463.967400.534104.400503.64310HepG2RPS19
NGFRAP1ENSG00000166681.9574.16120300.573000.933607.172505.89390HepG2RPS3A
NGFRAP1ENSG00000166681.9902.19490589.096700.614805.273303.77760HepG2RPS5
NGFRAP1ENSG00000166681.9310.03680520.70650-0.748005.313704.25710HepG2RRP9
NGFRAP1ENSG00000166681.91033.55140697.689900.566903.317202.57680HepG2SF3A3
NGFRAP1ENSG00000166681.9342.71950784.28190-1.1943016.7704015.19220HepG2SF3B1
NGFRAP1ENSG00000166681.9844.92940654.060900.369303.401102.75370HepG2SF3B4
NGFRAP1ENSG00000166681.9761.90160502.846200.599403.962802.01440HepG2SND1
NGFRAP1ENSG00000166681.91371.72410682.696901.0066026.8735025.73130HepG2SRSF1
NGFRAP1ENSG00000166681.9625.74370843.85850-0.431402.345401.43300HepG2SRSF3
NGFRAP1ENSG00000166681.91051.08830874.480100.265302.589601.97950HepG2SRSF5
NGFRAP1ENSG00000166681.9836.317801068.09950-0.352903.706702.91840HepG2SRSF7
NGFRAP1ENSG00000166681.91340.803701075.084800.318503.842103.26020HepG2SSB
NGFRAP1ENSG00000166681.9220.96310507.67110-1.200109.512607.40780HepG2STAU1
NGFRAP1ENSG00000166681.9268.28120482.12490-0.845704.850503.25100HepG2SUB1
NGFRAP1ENSG00000166681.91752.33350679.390201.3669022.3371020.75160HepG2SUPV3L1
NGFRAP1ENSG00000166681.91043.27030613.631900.765608.711207.80640HepG2TAF15
NGFRAP1ENSG00000166681.9390.38980563.84700-0.530404.502303.44390HepG2TIA1
NGFRAP1ENSG00000166681.9712.87630550.590900.372602.768102.26710HepG2TIAL1
NGFRAP1ENSG00000166681.91165.20510865.287300.429204.317603.19720HepG2TUFM
NGFRAP1ENSG00000166681.9806.01460618.745900.381402.940002.22360HepG2UPF1
NGFRAP1ENSG00000166681.91081.38820567.467300.930208.445206.69130HepG2XRCC6
NGFRAP1ENSG00000166681.91028.10140668.786000.620305.091904.11580HepG2XRN2
NGFRAP1ENSG00000166681.91004.35330523.600900.9396022.3426020.76480HepG2ZC3H8
NGFRAP1ENSG00000166681.9536.70440680.49970-0.342503.231602.65440HepG2ZNF622
NGFRAP1ENSG00000166681.9759.23980515.681300.558003.453501.99840HepG2ZRANB2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NGFRAP1 is not available on ENCORE database.





8 RBPs can affect the splicing of NGFRAP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENGFRAP1ENSG00000166681.9chrX+1026319551026320341026312671026315411026324371026330050.103000.000290.06310includedHepG2ILF3
SENGFRAP1ENSG00000166681.9chrX+102631955102632034102631267102631541102632437102633005-0.099000.000000.00005excludedHepG2SRSF7
SENGFRAP1ENSG00000166681.9chrX+102631955102632034102631267102631541102632437102633005-0.060000.002750.05607excludedHepG2SRSF1
SENGFRAP1ENSG00000166681.9chrX+1026319551026321891026313221026315411026324371026330050.148000.001070.07087includedHepG2TIAL1
SENGFRAP1ENSG00000166681.9chrX+1026319551026320341026312671026315411026323901026330050.063000.000130.00886includedHepG2HNRNPU
A3SSNGFRAP1ENSG00000166681.9chrX+102632390102633005102632437102633005102631955102632034-0.150000.000010.00406shorterHepG2SFPQ
A3SSNGFRAP1ENSG00000166681.9chrX+102632390102633005102632437102633005102631955102632034-0.109000.000000.00294shorterHepG2HNRNPL
A3SSNGFRAP1ENSG00000166681.9chrX+1026323901026330051026324371026330051026319551026320340.157000.000040.00596longerHepG2SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NGFRAP1 is not avaliable on ENCORE database.