NCOA6

General Information

Gene Name       : NCOA6
Gene ID             : ENSG00000198646.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NCOA6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NCOA6ENSG00000198646.1315.6614.0314.84ENCSR000AEF
HepG2NCOA6ENSG00000198646.1319.4924.9422.21ENCSR985KAT
K562NCOA6ENSG00000198646.1313.4416.8415.14ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NCOA6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NCOA6 RNA is bound by 33 proteins.  







eCLIP assay for NCOA6 is not avaliable on ENCORE database.





33 proteins are bound to NCOA6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr203330262933302708-3'-UTR,intron-Distal3.259313.53952HepG2KHSRP
chr203330261233302714-3'-UTR,intron-Distal6.2057712.74445HepG2FUBP3
chr203330271733302791-3'-UTR,intron-Distal,intron-Proximal3.816313.00062K562PUM2
chr203330264333302717-3'-UTR,intron-Distal6.0493014.67371K562PUM2
chr203340869633408807-5'-UTR,intron-Distal4.903996.96728HepG2HNRNPM
chr203341331633413393-5'-UTR,intron-Distal3.500984.74378HepG2GTF2F1
chr203337008533370183-5'-UTR,CDS,intron-Distal3.485803.05347HepG2UCHL5
chr203341327233413338-5'-UTR,intron-Distal3.905726.48236HepG2DDX3X
chr203338032133380400-5'-UTR,intron-Distal,intron-Proximal3.069824.06762HepG2U2AF2
chr203341321833413282-5'-UTR,intron-Distal3.326586.29405HepG2PRPF8
chr203341337033413433-5'-UTR,intron-Distal4.159149.88902HepG2DDX3X
chr203335622833356281-CDS,intron-Distal,intron-Proximal3.223463.20886K562PRPF8
chr203334534233345369-CDS,intron-Distal4.032893.81597K562RBM15
chr203333085133330909-CDS,intron-Distal3.345843.31745K562ZNF622
chr203332877533328851-CDS,intron-Distal3.573324.84827HepG2HNRNPK
chr203332922633329280-CDS,intron-Distal4.414755.34770HepG2IGF2BP1
chr203333034533330396-CDS,intron-Distal4.125556.34884HepG2IGF2BP1
chr203334536933345385-CDS,intron-Distal3.367283.93112K562RBM15
chr203333042133330510-CDS,intron-Distal3.363778.08169HepG2IGF2BP1
chr203334556833345616-CDS,intron-Distal3.337594.01163K562RBM15
chr203334564533345721-CDS,intron-Distal3.482227.59580HepG2IGF2BP1
chr203334260933342670-CDS,intron-Distal3.242865.67580HepG2U2AF2
chr203333466833334738-CDS,intron-Distal,intron-Proximal3.395757.59931HepG2U2AF1
chr203334510733345191-CDS,intron-Distal3.680874.49016HepG2FXR2
chr203334516633345247-CDS,intron-Distal4.167173.97692K562IGF2BP1
chr203336421833364269-CDS,intron-Distal,intron-Proximal4.512224.28193HepG2AQR
chr203334503733345194-CDS,intron-Distal3.874304.76274K562UCHL5
chr203334254233342655-CDS,intron-Distal3.470796.85077HepG2IGF2BP1
chr203335626233356314-CDS,intron-Distal,intron-Proximal3.517574.34695HepG2BCLAF1
chr203337003233370091-CDS,intron-Distal3.027996.06438HepG2BCLAF1
chr203334574333345784-CDS,intron-Distal3.722066.19583K562RBM15
chr203333466033334741-CDS,intron-Distal,intron-Proximal3.6595420.13085HepG2U2AF2
chr203334572133345777-CDS,intron-Distal4.502545.09622HepG2IGF2BP1
chr203334510833345187-CDS,intron-Distal4.050507.58181HepG2IGF2BP1
chr203333467933334739-CDS,intron-Distal,intron-Proximal5.4017010.76511K562U2AF1
chr203333041133330517-CDS,intron-Distal3.826685.84244HepG2HNRNPK
chr203334662133346716-CDS,intron-Distal3.120623.87559K562YBX3
chr203334520533345277-CDS,intron-Distal4.7221213.07335HepG2PCBP2
chr203334261133342674-CDS,intron-Distal,intron-Proximal3.096053.73965HepG2U2AF1
chr203333096433331073-CDS,intron-Distal4.5501914.38662HepG2IGF2BP1
chr203333466833334738-CDS,intron-Distal,intron-Proximal5.5985615.59486K562U2AF2
chr203331518433315233-CDS,intron-Distal,intron-Proximal3.206663.76090HepG2U2AF2
chr203336406033364119-CDS,intron-Distal,intron-Proximal6.169408.38577HepG2PRPF8
chr203334528533345439-CDS,intron-Distal3.068728.66791HepG2IGF2BP1
chr203335631333356411-CDS,intron-Distal,intron-Proximal3.8621712.21109HepG2U2AF2
chr203332921033329317-CDS,intron-Distal3.634746.76916HepG2HNRNPK
chr203334518733345285-CDS,intron-Distal5.1814616.38730HepG2IGF2BP1
chr203332452033324574-CDS,intron-Distal,intron-Proximal3.603497.15738HepG2U2AF2
chr203335623233356290-CDS,intron-Distal,intron-Proximal6.1285126.43200HepG2PRPF8
chr203332898033329050-CDS,intron-Distal4.374629.92069HepG2IGF2BP1
chr203332880333328866-CDS,intron-Distal3.898973.08588HepG2IGF2BP3
chr203336401433364112-CDS,intron-Distal,intron-Proximal4.103136.75234K562PRPF8
chr203332875433328849-CDS,intron-Distal4.0537417.71690HepG2PCBP2
chr203336415833364253-CDS,intron-Distal,intron-Proximal3.749509.83905HepG2BCLAF1
chr203333084033330899-CDS,intron-Distal3.419455.85073HepG2IGF2BP1
chr203336992233369973-CDS,intron-Distal,intron-Proximal3.676665.97823HepG2BCLAF1
chr203341280733413013-intron-Distal3.5170412.23618HepG2CSTF2T
chr203338658833386692-intron-Distal3.516693.68462HepG2MATR3
chr203338786133387930-intron-Distal4.799796.12104HepG2QKI
chr203341289033412998-intron-Distal4.426923.62703K562AKAP8L
chr203341297533413034-intron-Distal3.932634.25134HepG2RBFOX2
chr203341296433413033-intron-Distal3.102657.87612HepG2FAM120A
chr203341296533413014-intron-Distal3.296945.10926HepG2GTF2F1
chr203338745433387514-intron-Distal3.957213.86809HepG2SUGP2
chr203341316133413237-intron-Distal3.896337.53498HepG2PRPF4
chr203339064333390779-intron-Distal3.975505.85866HepG2ILF3
chr203341294133413013-intron-Distal3.979196.08301HepG2EFTUD2
chr203336286633362989-intron-Distal3.297663.19404HepG2PTBP1
chr203336131233361353-intron-Distal3.722313.38413HepG2HNRNPC
chr203341290533413058-intron-Distal4.3236214.15077HepG2PRPF4
chr203333687433336956-intron-Distal3.095253.06005HepG2QKI
chr203336288633362927-intron-Distal3.339754.97118HepG2U2AF2
chr203341309933413252-intron-Distal3.6818715.92672HepG2CSTF2T
chr203341271833412780-intron-Distal4.557296.34455HepG2PRPF4
chr203338821033388286-intron-Distal4.395258.31278HepG2MATR3
chr203341314033413241-intron-Distal3.681105.55220K562CSTF2T
chr203336389033363967-intron-Distal4.542608.64802HepG2U2AF2
chr203338859033388637-intron-Distal4.133213.78432HepG2MATR3
chr203336282533362883-intron-Distal3.260425.19200HepG2PCBP2
chr203341315933413237-intron-Distal3.359705.09109HepG2GTF2F1
chr203336289733362975-intron-Distal3.302889.57383HepG2PCBP2
chr203336979533369900-intron-Distal,intron-Proximal3.625204.52210K562KHSRP
chr203341288533412975-intron-Distal4.8407811.68672HepG2RBFOX2
chr203341278033412881-intron-Distal4.074348.40843HepG2PRPF4
chr203338728433387366-intron-Distal3.576484.36087HepG2MATR3
chr203341293233412960-intron-Distal4.159083.57264HepG2GTF2F1
chr203340122133401272-intron-Distal3.984063.55640HepG2QKI
chr203336615433366211-intron-Distal4.778596.91139HepG2QKI
chr203336743433367481-intron-Distal4.020055.67291HepG2U2AF2
chr203331521333315275-intron-Distal,intron-Proximal3.835783.05889HepG2SF3B4
chr203334635533346443-intron-Distal4.8378511.18830HepG2U2AF2
chr203341285533412964-intron-Distal3.284057.01282HepG2FAM120A
chr203338819933388338-intron-Distal3.682385.28337HepG2HNRNPM
chr203336958833369677-intron-Distal3.299444.06432HepG2KHSRP
chr203341315733413252-intron-Distal3.200788.11033HepG2FAM120A
chr203338728733387356-intron-Distal3.258803.59523HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NCOA6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NCOA6 is not available on ENCORE database.

  • 82 RBPs can affect the levels of NCOA6.  








The Knockdown/knockout RNA-Seq assay for NCOA6 is not available on ENCORE database.





82 RBPs can affect the gene expression of NCOA6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NCOA6ENSG00000198646.9911.947202241.93760-1.2977021.7607020.42400HepG2AKAP1
NCOA6ENSG00000198646.91786.662802180.00970-0.287103.846002.95490HepG2AKAP8L
NCOA6ENSG00000198646.93662.692704649.38330-0.344103.421302.76310HepG2BOP1
NCOA6ENSG00000198646.91631.753302266.91880-0.474302.588601.84980HepG2CNOT7
NCOA6ENSG00000198646.9770.891501045.28550-0.439303.533202.33200HepG2CSTF2
NCOA6ENSG00000198646.91659.874302147.46200-0.371602.776302.14910HepG2DDX3X
NCOA6ENSG00000198646.91011.993301663.79860-0.717307.165905.99030HepG2DDX55
NCOA6ENSG00000198646.91633.202402105.80900-0.366705.044404.20520HepG2DNAJC2
NCOA6ENSG00000198646.92443.670501773.357900.462504.120203.40570HepG2EIF2S1
NCOA6ENSG00000198646.93316.818904529.81770-0.449703.790301.71150HepG2EIF3H
NCOA6ENSG00000198646.92638.531701908.263000.467403.024502.30820HepG2EIF4B
NCOA6ENSG00000198646.94196.180503271.735400.358906.848705.97270HepG2ETF1
NCOA6ENSG00000198646.91711.887202120.29660-0.308702.849702.00200HepG2EWSR1
NCOA6ENSG00000198646.91268.373901675.33660-0.401504.621503.07820HepG2FAM120A
NCOA6ENSG00000198646.92647.216001709.085300.631205.035103.98670HepG2FUBP3
NCOA6ENSG00000198646.91458.835901834.30430-0.330402.151101.56200HepG2G3BP1
NCOA6ENSG00000198646.91794.425802144.81850-0.257302.031501.46770HepG2HNRNPA1
NCOA6ENSG00000198646.91767.949202216.06920-0.325904.694603.52920HepG2HNRNPA2B1
NCOA6ENSG00000198646.91593.286202196.50470-0.4632011.230609.95330HepG2HNRNPL
NCOA6ENSG00000198646.91360.517802210.13160-0.700005.626303.69690HepG2ILF3
NCOA6ENSG00000198646.91346.949801695.12540-0.331702.758401.62490HepG2LARP7
NCOA6ENSG00000198646.91295.471301779.84620-0.458304.608903.03260HepG2LIN28B
NCOA6ENSG00000198646.92470.874603404.44640-0.462406.414405.23170HepG2MSI2
NCOA6ENSG00000198646.93478.366802858.767300.282902.538201.37640HepG2NAA15
NCOA6ENSG00000198646.91183.200201532.73160-0.373403.122501.61760HepG2NIP7
NCOA6ENSG00000198646.94922.809704094.378500.265702.143001.48160HepG2NSUN2
NCOA6ENSG00000198646.92516.743201813.009500.473104.236803.35450HepG2PABPC4
NCOA6ENSG00000198646.93964.465603269.435600.278004.222703.29000HepG2PRPF4
NCOA6ENSG00000198646.92679.592402140.179300.324204.174503.42870HepG2QKI
NCOA6ENSG00000198646.92913.521801942.447600.584809.704308.49820HepG2RBM25
NCOA6ENSG00000198646.92401.114502048.613700.229002.945402.31140HepG2RECQL
NCOA6ENSG00000198646.92866.082303401.70170-0.247202.072701.47160HepG2RPLP0
NCOA6ENSG00000198646.92324.544201824.019800.349703.635702.94070HepG2RPS19
NCOA6ENSG00000198646.95514.792504570.741400.270802.301801.65540HepG2SF3B1
NCOA6ENSG00000198646.92676.326902057.419700.379307.038006.16370HepG2SF3B4
NCOA6ENSG00000198646.92636.891802188.548500.268804.647703.77450HepG2SLBP
NCOA6ENSG00000198646.91845.861203088.54320-0.7426027.1839026.03360HepG2SRFBP1
NCOA6ENSG00000198646.92707.276902147.589300.334006.067105.43380HepG2SRSF1
NCOA6ENSG00000198646.95614.429904500.405500.319003.015502.26210HepG2TARDBP
NCOA6ENSG00000198646.92098.151301773.681800.242302.152301.41280HepG2TIA1
NCOA6ENSG00000198646.91427.602402323.46600-0.7027020.3071018.95700HepG2TRIM56
NCOA6ENSG00000198646.92738.816402229.888600.296502.957402.05080HepG2TUFM
NCOA6ENSG00000198646.96719.010403598.450100.9008018.1663016.50270HepG2U2AF1
NCOA6ENSG00000198646.97325.501602931.320601.321305.457804.03180HepG2U2AF2
NCOA6ENSG00000198646.9766.51760978.42970-0.352102.187101.51130HepG2UCHL5
NCOA6ENSG00000198646.93153.598703962.29600-0.329306.772305.75870HepG2UPF1
NCOA6ENSG00000198646.94303.431103825.435500.169802.260401.70740HepG2UTP3
NCOA6ENSG00000198646.91269.189001630.43980-0.361402.512701.81910HepG2XRN2
NCOA6ENSG00000198646.93820.224504357.76190-0.189903.296302.71450HepG2ZNF622
NCOA6ENSG00000198646.9930.011801555.35290-0.741905.944705.16240K562AGGF1
NCOA6ENSG00000198646.9394.41050613.19380-0.636607.547005.06550K562AKAP1
NCOA6ENSG00000198646.91109.552901708.86010-0.623104.924203.52300K562AKAP8
NCOA6ENSG00000198646.9783.554301618.35680-1.046409.786908.46290K562AKAP8L
NCOA6ENSG00000198646.92533.145501310.159000.9511017.0303015.73660K562AQR
NCOA6ENSG00000198646.91105.806401697.93530-0.618704.498103.30280K562ATP5C1
NCOA6ENSG00000198646.91377.77430944.720900.544305.543403.92260K562CCAR1
NCOA6ENSG00000198646.9568.45080716.58680-0.334102.255601.32060K562CSTF2
NCOA6ENSG00000198646.93588.085902531.082500.503404.860604.03120K562DDX47
NCOA6ENSG00000198646.9483.58600629.88630-0.381302.664001.39110K562DDX6
NCOA6ENSG00000198646.91481.532401057.655900.486104.461202.70800K562DHX30
NCOA6ENSG00000198646.91291.576001741.83440-0.431502.833301.94810K562DKC1
NCOA6ENSG00000198646.91750.98350960.927500.865607.061505.40630K562EIF3A
NCOA6ENSG00000198646.91047.10190663.233800.658709.721708.22790K562EIF3G
NCOA6ENSG00000198646.91214.35900649.067100.9037014.0368012.11760K562EIF4A3
NCOA6ENSG00000198646.92546.231202152.683900.242102.705001.77520K562EIF4G2
NCOA6ENSG00000198646.91544.425502330.42750-0.593502.227401.46560K562FIP1L1
NCOA6ENSG00000198646.91439.189201056.778400.445503.569502.26730K562FKBP4
NCOA6ENSG00000198646.91394.99290674.998901.0472026.6283024.87470K562FXR1
NCOA6ENSG00000198646.9526.54130749.86360-0.510104.495702.62730K562G3BP1
NCOA6ENSG00000198646.91372.615901969.04510-0.520606.689905.50860K562GRSF1
NCOA6ENSG00000198646.92112.716501217.591300.7950014.8808013.58170K562HNRNPC
NCOA6ENSG00000198646.91768.289303159.87120-0.837504.120203.15560K562HSPD1
NCOA6ENSG00000198646.9952.175301717.68590-0.851205.631104.36080K562KIF1C
NCOA6ENSG00000198646.91046.47870824.285000.344202.835001.98420K562MAGOH
NCOA6ENSG00000198646.91030.386701644.08190-0.674104.974303.39550K562MAK16
NCOA6ENSG00000198646.91015.71350822.574900.304202.259401.43280K562MATR3
NCOA6ENSG00000198646.9828.204401348.71630-0.703504.926903.63860K562NAA15
NCOA6ENSG00000198646.91373.497702645.18120-0.945505.364404.16130K562PPIG
NCOA6ENSG00000198646.93031.599002348.822600.368004.282603.27430K562PUF60
NCOA6ENSG00000198646.9980.177301605.38410-0.711805.365904.64110K562PUS1
NCOA6ENSG00000198646.9956.968101563.85830-0.708605.562604.74700K562RBM15
NCOA6ENSG00000198646.91297.59340881.440300.557805.038903.63240K562RPS3
NCOA6ENSG00000198646.91894.670101395.142700.441403.701902.44390K562SAFB
NCOA6ENSG00000198646.9837.28220537.781400.638607.960706.46450K562SF3B4
NCOA6ENSG00000198646.91003.96300785.140800.354602.898602.17790K562SRSF1
NCOA6ENSG00000198646.91127.80010850.980900.406203.534602.32320K562SRSF4
NCOA6ENSG00000198646.9525.27590684.14370-0.381202.924601.60300K562SSB
NCOA6ENSG00000198646.91992.989301570.307200.343803.382002.47600K562SYNCRIP
NCOA6ENSG00000198646.9788.166301115.37930-0.501004.416403.15900K562TRIM56
NCOA6ENSG00000198646.9786.40850517.725900.603006.846205.59040K562U2AF2
NCOA6ENSG00000198646.92353.210201892.887000.313905.162604.03690K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NCOA6 is not available on ENCORE database.





18 RBPs can affect the splicing of NCOA6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENCOA6ENSG00000198646.9chr20-333466073334673633345022333459073335626633356389-0.302000.000000.00005excludedK562AKAP8L
SENCOA6ENSG00000198646.9chr20-333150623331521133302577333031693332036233320399-0.139000.000010.00014excludedK562AQR
SENCOA6ENSG00000198646.9chr20-333466073334673633345022333459073335626633356389-0.141000.010680.08555excludedK562AQR
SENCOA6ENSG00000198646.9chr20-333466073334673633345022333459073335626633356389-0.231000.000000.00012excludedK562PUS1
SENCOA6ENSG00000198646.9chr20-333281663333114533324493333245623333461033334732-0.236000.000060.01476excludedK562HNRNPM
SENCOA6ENSG00000198646.9chr20-3333650133336606333346103333473233337205333383220.079000.000160.00564includedHepG2SRSF1
SENCOA6ENSG00000198646.9chr20-333466073334673633345022333459073335626633356389-0.085000.000470.01686excludedHepG2SF3A3
SENCOA6ENSG00000198646.9chr20-333466073334673633345022333459073335626633356389-0.114000.002480.06671excludedK562UTP18
SENCOA6ENSG00000198646.9chr20-333281663333114533324493333245623333461033334732-0.363000.000000.00031excludedK562AGGF1
SENCOA6ENSG00000198646.9chr20-333466073334673633345022333459073335626633356389-0.125000.003100.06531excludedK562AGGF1
SENCOA6ENSG00000198646.9chr20-333466073334673633345022333459073335626633356389-0.137000.000030.00209excludedK562SF3B1
SENCOA6ENSG00000198646.9chr20-333281663333114533324493333245623333461033334732-0.442000.001420.05848excludedK562HNRNPK
SENCOA6ENSG00000198646.9chr20-3331506233315211333025773330316933320362333203990.072000.001600.06176includedHepG2HNRNPU
SENCOA6ENSG00000198646.9chr20-333281663333114533324493333245623333461033334732-0.488000.000000.00000excludedHepG2HNRNPU
SENCOA6ENSG00000198646.9chr20-3332816633331145333244933332456233334610333347320.177000.000100.02973includedK562SAFB
SENCOA6ENSG00000198646.9chr20-3332816633331145333244933332456233334610333347320.192000.005200.07143includedK562HNRNPC
MXENCOA6ENSG00000198646.9chr20-33315062333152113332019033320399333025773330316933324493333245620.137000.004260.064171includedHepG2U2AF1
MXENCOA6ENSG00000198646.9chr20-33315062333152113332036233320399333025773330316933324493333245620.156000.007530.096591includedHepG2U2AF1
MXENCOA6ENSG00000198646.9chr20-3332036233320399333244933332456233315062333152113332816633331145-0.124000.006660.087832includedHepG2U2AF1
MXENCOA6ENSG00000198646.9chr20-3332036233320399333244933332456233302577333031693332816633331145-0.256000.004000.029842includedK562AQR
MXENCOA6ENSG00000198646.9chr20-3332449333324562333281663333114533320362333203993333461033334732-0.111000.000350.070412includedK562METAP2
MXENCOA6ENSG00000198646.9chr20-33369923333702073338025233380366333640953336425133413274334134520.162000.000120.012701includedHepG2LARP4
MXENCOA6ENSG00000198646.9chr20-33315062333152113332036233320399333025773330316933324493333245620.156000.002340.068211includedHepG2NCBP2
MXENCOA6ENSG00000198646.9chr20-33324493333245623332816633331145333203623332039933334610333347320.291000.004950.080021includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NCOA6 is not avaliable on ENCORE database.