NCKIPSD

General Information

Gene Name       : NCKIPSD
Gene ID             : ENSG00000213672.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NCKIPSD)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NCKIPSDENSG00000213672.73.357.945.65ENCSR000AEF
HepG2NCKIPSDENSG00000213672.726.4512.5219.48ENCSR985KAT
K562NCKIPSDENSG00000213672.711.7010.1010.90ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NCKIPSD is not avaliable on ENCORE database.



Proteins bound to RNA
  • NCKIPSD RNA is bound by 18 proteins.  







eCLIP assay for NCKIPSD is not avaliable on ENCORE database.





18 proteins are bound to NCKIPSD RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr34871159648711723-3'-UTR,intron-Distal,intron-Proximal3.920803.19379HepG2AKAP1
chr34871981848719882-3'-UTR,CDS,intron-Distal4.062333.81597K562RBM15
chr34871994548720010-3'-UTR,CDS,intron-Distal,intron-Proximal4.557985.29191K562BUD13
chr34871973648719792-3'-UTR,CDS,intron-Distal,intron-Proximal4.662805.01842HepG2PRPF8
chr34871146948711580-3'-UTR,intron-Distal4.276494.49605HepG2UPF1
chr34871129948711393-3'-UTR,intron-Distal6.0622411.25684K562PUM2
chr34871994848719984-3'-UTR,CDS,intron-Distal4.600893.79199HepG2PPIG
chr34871920748719256-3'-UTR,CDS,intron-Distal,intron-Proximal5.104395.40008K562SF3B4
chr34871996048720035-3'-UTR,CDS,intron-Distal,intron-Proximal3.589946.71722K562SF3B4
chr34871994648720010-3'-UTR,CDS,intron-Distal,intron-Proximal4.528586.32052K562AQR
chr34871995548720014-3'-UTR,CDS,intron-Distal,intron-Proximal3.512223.39008HepG2AQR
chr34871918448719264-3'-UTR,CDS,intron-Distal,intron-Proximal3.388894.88100K562AQR
chr34872041648720491-3'-UTR,CDS,intron-Distal,intron-Proximal4.063165.63851K562SF3B4
chr34871755348717619-CDS,intron-Distal5.6586615.16547K562LIN28B
chr34871644548716499-CDS,intron-Distal,intron-Proximal3.033876.92749HepG2PRPF8
chr34871611348716169-CDS,intron-Distal3.656304.77136HepG2PPIG
chr34871749248717539-CDS,intron-Distal3.857195.30777HepG2PPIG
chr34871634048716381-CDS,intron-Distal3.034623.60157HepG2GRWD1
chr34871660448716650-CDS,intron-Distal,intron-Proximal4.068363.28461K562BUD13
chr34871762748717689-CDS,intron-Distal,intron-Proximal3.286823.84691HepG2SF3B4
chr34871762148717680-CDS,intron-Distal,intron-Proximal3.113004.38519K562BUD13
chr34871681948716861-CDS,intron-Distal3.110914.24993HepG2PPIG
chr34871885848718927-CDS,intron-Distal,intron-Proximal3.630935.30777HepG2PPIG
chr34871763648717723-CDS,intron-Distal,intron-Proximal4.5584311.66069K562SF3B4
chr34871887948718960-CDS,intron-Distal,intron-Proximal3.450304.06757K562UCHL5
chr34871756548717615-CDS,intron-Distal4.453404.60263HepG2LIN28B
chr34871630948716365-CDS,intron-Distal,intron-Proximal4.021257.26626HepG2PPIG
chr34871763848717741-CDS,intron-Distal,intron-Proximal6.0904417.94355HepG2SF3A3
chr34871724048717299-CDS,intron-Distal,intron-Proximal4.203128.12130HepG2PPIG
chr34872317448723224-CDS,intron-Distal5.190233.85934HepG2DDX3X
chr34871714348717190-CDS,intron-Distal,intron-Proximal4.798914.90235K562SF3B4
chr34871796348717996-intron-Distal3.847073.04254K562UCHL5
chr34872135848721414-intron-Distal4.830324.90095K562PTBP1
chr34871972748719774-intron-Distal,intron-Proximal3.962483.56076K562BUD13
chr34872018548720259-intron-Distal,intron-Proximal3.951663.48722HepG2PRPF4
chr34871804548718102-intron-Distal4.530755.29191K562BUD13
chr34871640548716461-intron-Distal,intron-Proximal5.5781616.57518K562SF3B4
chr34871803848718102-intron-Distal3.641774.35063HepG2PRPF4
chr34871817248718256-intron-Distal4.954436.78736HepG2PRPF4
chr34871816648718224-intron-Distal4.203226.10653K562SF3B4
chr34871768948717745-intron-Distal,intron-Proximal4.065504.07325HepG2SF3B4
chr34872256748722623-intron-Distal4.966955.92007HepG2DDX59
chr34871661648716662-intron-Distal,intron-Proximal4.776724.40745K562SF3B4
chr34871570948715799-intron-Distal4.181633.01994HepG2GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NCKIPSD is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NCKIPSD is not available on ENCORE database.

  • 81 RBPs can affect the levels of NCKIPSD.  








The Knockdown/knockout RNA-Seq assay for NCKIPSD is not available on ENCORE database.





81 RBPs can affect the gene expression of NCKIPSD :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NCKIPSDENSG00000213672.3570.37550847.91690-0.572001.980601.31260HepG2ASCC1
NCKIPSDENSG00000213672.31276.01730871.318700.550309.067807.94380HepG2AUH
NCKIPSDENSG00000213672.3460.03070663.00690-0.527304.429103.48150HepG2CALR
NCKIPSDENSG00000213672.3627.52830857.71160-0.450805.866904.96390HepG2CKAP4
NCKIPSDENSG00000213672.3426.82860557.69470-0.385802.169201.55090HepG2CPSF6
NCKIPSDENSG00000213672.3642.70560793.48200-0.304002.964102.10250HepG2DDX19B
NCKIPSDENSG00000213672.3307.38000529.60650-0.784907.595206.09450HepG2DDX24
NCKIPSDENSG00000213672.31376.44170843.642300.706105.851104.98290HepG2DDX6
NCKIPSDENSG00000213672.3445.18480820.84980-0.8827015.1173013.80010HepG2DKC1
NCKIPSDENSG00000213672.3844.41920507.406400.7347010.999809.67320HepG2DNAJC21
NCKIPSDENSG00000213672.3674.23150502.974100.422703.643202.91420HepG2DNAJC2
NCKIPSDENSG00000213672.3484.01730654.30210-0.434902.649001.74460HepG2EEF2
NCKIPSDENSG00000213672.3333.74770498.34220-0.578403.263902.05140HepG2AGO1
NCKIPSDENSG00000213672.31465.67270810.564000.854509.897208.81760HepG2EIF2S1
NCKIPSDENSG00000213672.31001.27850795.261100.332202.389901.63090HepG2EIF4G2
NCKIPSDENSG00000213672.3649.04050838.32920-0.369202.846401.99990HepG2EWSR1
NCKIPSDENSG00000213672.3705.61140511.300300.464604.314903.44020HepG2HNRNPF
NCKIPSDENSG00000213672.31144.45020766.410300.578408.959807.81350HepG2HNRNPL
NCKIPSDENSG00000213672.3714.72010566.051000.336302.989402.36140HepG2HNRNPU
NCKIPSDENSG00000213672.31018.70790834.335900.287902.540701.81070HepG2NOL12
NCKIPSDENSG00000213672.3618.85850893.37060-0.529606.625905.74850HepG2PCBP1
NCKIPSDENSG00000213672.3623.28010504.869500.303902.130101.47600HepG2PPIL4
NCKIPSDENSG00000213672.3364.96880553.67880-0.601305.762604.68880HepG2PRPF4
NCKIPSDENSG00000213672.3256.67320402.98300-0.650803.412002.52340HepG2PRPF8
NCKIPSDENSG00000213672.3307.59000502.73070-0.708802.219601.58290HepG2RAVER1
NCKIPSDENSG00000213672.31627.924201239.545000.393104.619403.54640HepG2RBM15
NCKIPSDENSG00000213672.3417.23220836.13790-1.0029017.1597016.09370HepG2RBM22
NCKIPSDENSG00000213672.3468.10860661.79410-0.499503.454102.33960HepG2RBM27
NCKIPSDENSG00000213672.3782.514301011.69090-0.370601.876001.41160HepG2NELFE
NCKIPSDENSG00000213672.3614.69350942.35360-0.616407.660006.71020HepG2RECQL
NCKIPSDENSG00000213672.3359.07000516.83210-0.525403.818503.10690HepG2RPS19
NCKIPSDENSG00000213672.3264.77800398.60700-0.590203.102402.27700HepG2RRP9
NCKIPSDENSG00000213672.3375.61820518.65340-0.465502.945701.97300HepG2SERBP1
NCKIPSDENSG00000213672.3735.78080957.49240-0.380002.014201.43710HepG2SF3A3
NCKIPSDENSG00000213672.3547.76200946.37540-0.7889011.2376010.17000HepG2SF3B4
NCKIPSDENSG00000213672.3470.53520587.83120-0.321102.588901.96340HepG2SMN1
NCKIPSDENSG00000213672.3703.09180272.966701.364905.483503.46570HepG2SNRNP200
NCKIPSDENSG00000213672.3373.12810664.40900-0.832403.952503.01010HepG2SNRNP70
NCKIPSDENSG00000213672.3551.63370987.86010-0.8406010.728409.92960HepG2SRSF1
NCKIPSDENSG00000213672.3464.24710642.54730-0.468902.380301.46020HepG2SRSF3
NCKIPSDENSG00000213672.3626.80920502.359600.319202.067201.45600HepG2SRSF7
NCKIPSDENSG00000213672.3561.70110819.95680-0.545707.083706.33630HepG2SSB
NCKIPSDENSG00000213672.3639.27680883.40420-0.466603.045601.70040HepG2SSRP1
NCKIPSDENSG00000213672.3439.25230888.06330-1.0156010.442509.46500HepG2TAF15
NCKIPSDENSG00000213672.3442.49550549.96420-0.313701.898301.46660HepG2TIAL1
NCKIPSDENSG00000213672.3835.40200554.945000.590004.667103.97340HepG2TRIM56
NCKIPSDENSG00000213672.3687.86500317.485201.115303.517502.40000HepG2U2AF2
NCKIPSDENSG00000213672.3448.11550849.15130-0.9222018.3998016.90480HepG2UPF1
NCKIPSDENSG00000213672.3705.91650872.79440-0.306102.633201.60610HepG2UTP18
NCKIPSDENSG00000213672.31070.77940819.819300.385204.739103.98950HepG2UTP3
NCKIPSDENSG00000213672.31179.21070807.813300.545608.808707.87200K562AGGF1
NCKIPSDENSG00000213672.31253.71190840.578600.576705.298104.37910K562AKAP8L
NCKIPSDENSG00000213672.3590.69350811.76610-0.458701.835201.33820K562AQR
NCKIPSDENSG00000213672.3569.84340439.704100.373902.601901.67380K562BCLAF1
NCKIPSDENSG00000213672.3610.03170453.600700.427402.729901.68450K562CCAR1
NCKIPSDENSG00000213672.3697.68380533.903700.385902.935901.86030K562DDX3X
NCKIPSDENSG00000213672.3626.77730804.78670-0.360703.312202.60920K562DDX47
NCKIPSDENSG00000213672.3731.42420586.485000.318502.791601.57800K562EIF2S1
NCKIPSDENSG00000213672.3648.48490502.353200.368302.987401.77500K562EIF4B
NCKIPSDENSG00000213672.3607.16020417.889200.538904.181303.12590K562FIP1L1
NCKIPSDENSG00000213672.3353.58190580.10310-0.714307.917906.96310K562FXR1
NCKIPSDENSG00000213672.346.04550192.94960-2.0671014.3110012.42010K562G3BP2
NCKIPSDENSG00000213672.3646.31420445.517700.536704.331102.86240K562HNRNPF
NCKIPSDENSG00000213672.3922.66550741.589700.315102.356001.53100K562HNRNPU
NCKIPSDENSG00000213672.3715.90730358.985700.995704.627103.16040K562IGF2BP2
NCKIPSDENSG00000213672.3550.51750365.005600.592803.761902.32770K562IGF2BP3
NCKIPSDENSG00000213672.3625.20550444.956600.490603.671001.84350K562LSM11
NCKIPSDENSG00000213672.3785.00890394.327800.993205.054003.60370K562PABPN1
NCKIPSDENSG00000213672.3813.687701072.26720-0.398104.027902.32560K562PNPT1
NCKIPSDENSG00000213672.3387.13460548.65970-0.503103.923502.96290K562POLR2G
NCKIPSDENSG00000213672.3170.27680360.43190-1.081802.711401.96890K562PRPF8
NCKIPSDENSG00000213672.3665.23890447.262000.572704.420603.23560K562PSIP1
NCKIPSDENSG00000213672.3654.680701138.53830-0.7983010.060808.48360K562PUF60
NCKIPSDENSG00000213672.3974.571001186.54610-0.283902.741701.78690K562PUM2
NCKIPSDENSG00000213672.31310.69550833.536100.652904.381103.72060K562PUS1
NCKIPSDENSG00000213672.31201.89730812.227600.565308.146907.15850K562RBM15
NCKIPSDENSG00000213672.3504.40440342.314700.559202.648601.31510K562RBM34
NCKIPSDENSG00000213672.3836.92160485.111100.786703.009701.39170K562RBM39
NCKIPSDENSG00000213672.3600.20540408.167300.556204.705803.40990K562RCC2
NCKIPSDENSG00000213672.3893.89890439.412001.024403.819502.18990K562SFPQ
NCKIPSDENSG00000213672.3608.95910386.921500.654205.461503.87710K562SRFBP1
NCKIPSDENSG00000213672.3492.10990339.226400.536602.952601.86090K562SRSF5
NCKIPSDENSG00000213672.3417.97060550.33240-0.396902.733301.91930K562SYNCRIP
NCKIPSDENSG00000213672.3561.83840350.509500.680606.384705.06680K562TIA1
NCKIPSDENSG00000213672.3618.42160430.179300.523603.222202.20610K562TIAL1
NCKIPSDENSG00000213672.3564.87840344.140300.714803.128301.95620K562TRA2A
NCKIPSDENSG00000213672.3765.35710457.120000.743506.414104.83800K562TRIM56
NCKIPSDENSG00000213672.31087.32570884.516900.297703.039001.70650K562TROVE2
NCKIPSDENSG00000213672.3120.57250193.06430-0.679203.315502.43860K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NCKIPSD is not available on ENCORE database.





12 RBPs can affect the splicing of NCKIPSD :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENCKIPSDENSG00000213672.3chr3-487168094871689048716487487166164871700748717146-0.149000.000350.01999excludedHepG2SF3B4
A3SSNCKIPSDENSG00000213672.3chr3-4871947748719629487194774871958948719780487199850.215000.000000.00004longerK562AGGF1
A3SSNCKIPSDENSG00000213672.3chr3-487194774871958948719477487195684871978048719985-0.207000.000610.05485shorterK562AGGF1
A3SSNCKIPSDENSG00000213672.3chr3-487194774871958948719477487195684871978048719985-0.598000.000000.00092shorterHepG2HNRNPU
A3SSNCKIPSDENSG00000213672.3chr3-487194774871958948719477487195684871978048719985-0.458000.000290.05045shorterHepG2TIAL1
A3SSNCKIPSDENSG00000213672.3chr3-4871947748719629487194774871958948719780487199850.181000.000000.00003longerK562PUS1
A3SSNCKIPSDENSG00000213672.3chr3-4871947748719629487194774871958948719780487199850.114000.000530.07292longerK562UTP18
RINCKIPSDENSG00000213672.3chr3-4871630948716616487163094871640248716487487166160.087000.008610.07677includedHepG2SF3A3
RINCKIPSDENSG00000213672.3chr3-4871630948716616487163094871640248716487487166160.193000.000120.00259includedHepG2PRPF8
RINCKIPSDENSG00000213672.3chr3-4871630948716616487163094871640248716487487166160.166000.003820.04140includedK562AGGF1
RINCKIPSDENSG00000213672.3chr3-4871630948716616487163094871640248716487487166160.100000.000360.01284includedHepG2FTO
RINCKIPSDENSG00000213672.3chr3-4871630948716616487163094871640248716487487166160.063000.002220.02598includedHepG2QKI
RINCKIPSDENSG00000213672.3chr3-4871630948716616487163094871640248716487487166160.077000.000070.00305includedHepG2KHSRP
RINCKIPSDENSG00000213672.3chr3-4871630948716616487163094871640248716487487166160.073000.004680.03330includedHepG2SF3B4
RINCKIPSDENSG00000213672.3chr3-487163094871661648716309487164024871648748716616-0.130000.001480.02930excludedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NCKIPSD is not avaliable on ENCORE database.