LPCAT3

General Information

Gene Name       : LPCAT3
Gene ID             : ENSG00000111684.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: LPCAT3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LPCAT3ENSG00000111684.1017.8920.1019.00ENCSR000AEF
HepG2LPCAT3ENSG00000111684.1045.7148.6047.16ENCSR985KAT
K562LPCAT3ENSG00000111684.1029.1029.7929.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LPCAT3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LPCAT3 RNA is bound by 12 proteins.  







eCLIP assay for LPCAT3 is not avaliable on ENCORE database.





12 proteins are bound to LPCAT3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1270855457085692-3'-UTR,intron-Distal5.3670415.60584HepG2UPF1
chr1270854607085528-3'-UTR,intron-Distal4.410413.69433K562UPF1
chr1270859737086034-3'-UTR,intron-Distal4.142613.34655HepG2AKAP1
chr1270867817086892-3'-UTR,CDS,intron-Distal,intron-Proximal3.898113.31827HepG2GRWD1
chr1270854127085485-3'-UTR,intron-Distal5.552457.94456HepG2UPF1
chr1270909107090975-3'-UTR,CDS,intron-Distal,intron-Proximal5.221354.35676HepG2PRPF8
chr1270854137085498-3'-UTR,intron-Distal3.506036.04139HepG2AKAP1
chr1270855527085659-3'-UTR,intron-Distal3.514384.74299HepG2AKAP1
chr1270918817091944-3'-UTR,CDS,intron-Distal,intron-Proximal4.203787.04643K562PUM2
chr1270918367091900-3'-UTR,CDS,intron-Distal,intron-Proximal4.303984.70978HepG2IGF2BP1
chr1270864757086542-3'-UTR,CDS,intron-Distal,intron-Proximal3.887785.13777HepG2PRPF8
chr1271256357125778-5'-UTR,CDS,intron-Distal5.710857.39121HepG2RPS3
chr1271257037125781-5'-UTR,CDS,intron-Distal,intron-Proximal8.0647046.13370HepG2DDX3X
chr1271255887125774-5'-UTR,CDS,intron-Distal4.0953813.01397K562DDX3X
chr1271256497125703-CDS,intron-Distal4.5255823.86490HepG2DDX3X
chr1271256037125642-CDS,intron-Distal4.042506.15796HepG2DDX3X
chr1271074517107516-intron-Distal4.934625.89032HepG2QKI
chr1271064937106585-intron-Distal4.216573.30440HepG2QKI
chr1271217127121811-intron-Distal4.050573.88340K562TARDBP
chr1271184227118510-intron-Distal3.929933.58660HepG2ILF3
chr1270927457092807-intron-Distal,intron-Proximal3.579373.95921HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LPCAT3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LPCAT3 is not available on ENCORE database.

  • 104 RBPs can affect the levels of LPCAT3.  








The Knockdown/knockout RNA-Seq assay for LPCAT3 is not available on ENCORE database.





104 RBPs can affect the gene expression of LPCAT3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LPCAT3ENSG00000111684.63076.101601950.083100.657507.621906.16620HepG2ABCF1
LPCAT3ENSG00000111684.61099.536901408.86270-0.357605.114104.33680HepG2ACO1
LPCAT3ENSG00000111684.61465.851402046.56430-0.481503.709203.10540HepG2AKAP1
LPCAT3ENSG00000111684.61788.082301415.424300.337104.622703.65070HepG2AKAP8L
LPCAT3ENSG00000111684.61326.925201693.30770-0.351802.496701.74740HepG2ASCC1
LPCAT3ENSG00000111684.61846.404001368.772100.431704.270803.54550HepG2BOP1
LPCAT3ENSG00000111684.61848.501101460.686600.339602.850501.60010HepG2BUD13
LPCAT3ENSG00000111684.61930.905901519.861100.345203.588202.72590HepG2CALR
LPCAT3ENSG00000111684.62095.186301608.775800.381003.081502.26750HepG2CIRBP
LPCAT3ENSG00000111684.62334.206401256.597300.8933015.2208013.76780HepG2CPSF6
LPCAT3ENSG00000111684.61416.874301773.59010-0.324003.955503.21200HepG2CELF1
LPCAT3ENSG00000111684.62341.005401907.053100.295705.074204.11490HepG2DAZAP1
LPCAT3ENSG00000111684.62065.325601314.043700.652309.380908.21070HepG2DDX21
LPCAT3ENSG00000111684.61648.506301286.099100.358103.523402.48400HepG2DDX24
LPCAT3ENSG00000111684.62499.885701687.958100.566506.851105.31840HepG2DDX5
LPCAT3ENSG00000111684.61173.819001684.23870-0.520904.114203.37260HepG2DDX6
LPCAT3ENSG00000111684.61756.291601292.181200.442604.618203.36570HepG2DHX30
LPCAT3ENSG00000111684.62553.605801347.881900.9217027.1732025.59740HepG2DKC1
LPCAT3ENSG00000111684.61778.955101294.815000.458204.072302.97770HepG2EEF2
LPCAT3ENSG00000111684.6821.217801079.40060-0.394402.830301.71010HepG2EFTUD2
LPCAT3ENSG00000111684.62686.160801788.877400.586405.611304.70190HepG2EIF4A3
LPCAT3ENSG00000111684.61326.424401741.96600-0.393202.158701.54880HepG2EIF4B
LPCAT3ENSG00000111684.61509.641902190.61460-0.5371011.1545010.07790HepG2ETF1
LPCAT3ENSG00000111684.61118.775901969.02150-0.815609.764208.43720HepG2FIP1L1
LPCAT3ENSG00000111684.6924.835401324.24340-0.517903.436302.56320HepG2FUBP3
LPCAT3ENSG00000111684.6824.459401424.42350-0.788908.719407.62550HepG2GPKOW
LPCAT3ENSG00000111684.6824.266501696.02150-1.0410018.3048016.65950HepG2HNRNPK
LPCAT3ENSG00000111684.61386.632001737.18200-0.325205.150604.25430HepG2HNRNPL
LPCAT3ENSG00000111684.63294.904601359.356101.277209.902508.79540HepG2HNRNPLL
LPCAT3ENSG00000111684.61170.852901526.62820-0.382802.808902.07170HepG2ILF2
LPCAT3ENSG00000111684.61482.865701287.834000.203302.239101.32000HepG2KIF1C
LPCAT3ENSG00000111684.6841.611902281.24370-1.4386024.2011021.69440HepG2LARP4
LPCAT3ENSG00000111684.6975.307201291.59640-0.405203.356202.10600HepG2LARP7
LPCAT3ENSG00000111684.62306.087901815.964200.344602.248601.67610HepG2MATR3
LPCAT3ENSG00000111684.62252.473701593.181500.499505.992504.84440HepG2MSI2
LPCAT3ENSG00000111684.61447.920701891.02950-0.385204.793703.79080HepG2NOL12
LPCAT3ENSG00000111684.61467.464001714.93360-0.224802.429001.85140HepG2PCBP1
LPCAT3ENSG00000111684.6971.823601520.92400-0.646204.551203.24350HepG2PCBP2
LPCAT3ENSG00000111684.61027.415401333.01340-0.375704.340603.43840HepG2PPIL4
LPCAT3ENSG00000111684.61469.218701744.97720-0.248202.889702.33330HepG2PTBP1
LPCAT3ENSG00000111684.62513.496101805.150800.477505.993605.16000HepG2PUF60
LPCAT3ENSG00000111684.61323.703801916.24440-0.5337013.5758012.47220HepG2PUM1
LPCAT3ENSG00000111684.62180.567901435.007900.6035014.2549013.04660HepG2PUS1
LPCAT3ENSG00000111684.6802.965701889.92120-1.2349037.4451035.59730HepG2QKI
LPCAT3ENSG00000111684.61007.328901467.70020-0.543002.697902.00100HepG2RAVER1
LPCAT3ENSG00000111684.6994.031501830.95320-0.8812021.5162020.34740HepG2RBM22
LPCAT3ENSG00000111684.61241.695001715.19940-0.466105.518004.59600HepG2RBM25
LPCAT3ENSG00000111684.61479.361901942.01850-0.392606.180205.42600HepG2NELFE
LPCAT3ENSG00000111684.61109.013301808.67840-0.7057017.1012015.78320HepG2RECQL
LPCAT3ENSG00000111684.61202.85700631.039500.930609.033007.61710HepG2RPS3A
LPCAT3ENSG00000111684.6638.11970971.41230-0.606305.107504.07290HepG2RRP9
LPCAT3ENSG00000111684.61464.733101026.484600.512804.969003.72140HepG2SERBP1
LPCAT3ENSG00000111684.6600.925301345.47810-1.1629021.0304019.28320HepG2SF3B1
LPCAT3ENSG00000111684.6990.008901816.80360-0.8759024.8232023.35460HepG2SF3B4
LPCAT3ENSG00000111684.6682.785202068.00280-1.5987082.5488080.79260HepG2SRFBP1
LPCAT3ENSG00000111684.61066.148101447.78420-0.441402.672901.69160HepG2SRSF3
LPCAT3ENSG00000111684.61484.671901707.75310-0.202002.166601.54220HepG2SRSF7
LPCAT3ENSG00000111684.61142.826401542.74240-0.432907.280006.46090HepG2SRSF9
LPCAT3ENSG00000111684.63680.213901795.530901.0353050.9979049.47080HepG2SSB
LPCAT3ENSG00000111684.61766.432002026.99180-0.198502.431501.84130HepG2SUCLG1
LPCAT3ENSG00000111684.6908.544301358.45930-0.580304.323502.65150HepG2SUGP2
LPCAT3ENSG00000111684.6886.035401267.57440-0.516604.316703.49840HepG2SUPV3L1
LPCAT3ENSG00000111684.61247.263701704.42740-0.450506.640305.83650HepG2TAF15
LPCAT3ENSG00000111684.61670.204001325.024200.333902.608901.90180HepG2TARDBP
LPCAT3ENSG00000111684.62524.527201318.242200.937305.459004.00470HepG2TBRG4
LPCAT3ENSG00000111684.61199.877301566.20510-0.384404.136603.12180HepG2TIA1
LPCAT3ENSG00000111684.62001.307201452.045100.462806.572905.86270HepG2TIAL1
LPCAT3ENSG00000111684.61147.995301684.13310-0.552906.178605.25690HepG2U2AF1
LPCAT3ENSG00000111684.6555.01040748.73730-0.431903.081602.28180HepG2UCHL5
LPCAT3ENSG00000111684.63213.256502031.993700.6610021.9396020.34380HepG2UPF1
LPCAT3ENSG00000111684.63228.112802234.814300.5304018.0087016.91590HepG2ZNF622
LPCAT3ENSG00000111684.6510.76700745.46750-0.545505.399904.64880K562AGGF1
LPCAT3ENSG00000111684.6659.91440819.06190-0.311702.186501.32390K562AKAP8
LPCAT3ENSG00000111684.6511.43180775.66950-0.600905.927304.94730K562AKAP8L
LPCAT3ENSG00000111684.6554.40410997.60770-0.8475010.620709.58210K562AQR
LPCAT3ENSG00000111684.61202.791301478.97420-0.298202.339701.44320K562CELF1
LPCAT3ENSG00000111684.6308.69140419.68530-0.443102.832101.77750K562DDX3X
LPCAT3ENSG00000111684.6312.33620425.48820-0.446003.233801.79210K562DDX6
LPCAT3ENSG00000111684.6310.78930569.75860-0.874408.255606.60030K562EFTUD2
LPCAT3ENSG00000111684.6351.59340460.91440-0.390602.852501.62350K562EIF2S1
LPCAT3ENSG00000111684.6706.76150866.64380-0.294202.329801.66130K562EIF2S2
LPCAT3ENSG00000111684.6564.58990432.966100.382802.467701.71540K562EIF3G
LPCAT3ENSG00000111684.6594.50140759.58540-0.353502.165301.40550K562FMR1
LPCAT3ENSG00000111684.6462.66860643.82190-0.476702.980902.03080K562FTO
LPCAT3ENSG00000111684.6663.06180455.954500.540205.295404.49500K562FXR1
LPCAT3ENSG00000111684.6236.25990391.90930-0.730104.224403.30910K562G3BP2
LPCAT3ENSG00000111684.6582.15120837.79260-0.525206.008304.36460K562GLRX3
LPCAT3ENSG00000111684.6328.64320712.74600-1.1169015.4395013.52980K562GPKOW
LPCAT3ENSG00000111684.6709.143001154.96020-0.703708.826907.45770K562GRSF1
LPCAT3ENSG00000111684.6497.66040663.44370-0.414802.824702.22200K562HNRNPC
LPCAT3ENSG00000111684.6352.39580534.87220-0.602004.184002.62440K562HNRNPK
LPCAT3ENSG00000111684.6611.25830858.65330-0.490305.244804.00060K562HNRNPU
LPCAT3ENSG00000111684.6838.971501225.96990-0.547205.561804.45060K562HSPD1
LPCAT3ENSG00000111684.6349.24330535.53180-0.616703.876802.57920K562IGF2BP2
LPCAT3ENSG00000111684.6353.61650520.95300-0.559003.876202.10320K562ILF3
LPCAT3ENSG00000111684.6500.47000695.72150-0.475203.651102.63630K562METAP2
LPCAT3ENSG00000111684.6989.930801282.28030-0.373302.738001.61530K562MSI2
LPCAT3ENSG00000111684.6661.40300880.81660-0.413303.497102.59220K562MTPAP
LPCAT3ENSG00000111684.6311.39020437.84620-0.491703.373902.00830K562NCBP2
LPCAT3ENSG00000111684.6746.46300978.73970-0.390903.784502.92730K562NSUN2
LPCAT3ENSG00000111684.6420.50490550.16000-0.387702.618001.30840K562PCBP1
LPCAT3ENSG00000111684.6305.63830500.77780-0.712305.864704.42480K562PCBP2
LPCAT3ENSG00000111684.6339.30000554.44020-0.708505.408804.35570K562PRPF8
LPCAT3ENSG00000111684.6719.61340546.821700.396103.128002.42670K562PTBP1
LPCAT3ENSG00000111684.6381.24150769.41700-1.0131010.826009.79980K562PUS1
LPCAT3ENSG00000111684.6562.31450749.54370-0.414603.613102.94890K562RBM15
LPCAT3ENSG00000111684.6403.06530524.33920-0.379502.249601.49620K562RBM22
LPCAT3ENSG00000111684.6249.80200371.75860-0.573603.682602.12090K562RBM25
LPCAT3ENSG00000111684.6385.12540564.77300-0.552303.307302.41160K562RPS19
LPCAT3ENSG00000111684.6468.19240271.885700.784005.178403.74900K562RPS3
LPCAT3ENSG00000111684.6569.99170965.65710-0.760609.890908.41990K562SF3A3
LPCAT3ENSG00000111684.6319.39820677.86320-1.0856011.220309.17600K562SF3B1
LPCAT3ENSG00000111684.6182.69040407.54590-1.1576013.5238011.53530K562SF3B4
LPCAT3ENSG00000111684.6708.553001085.19240-0.615005.254303.44530K562STAU1
LPCAT3ENSG00000111684.6250.77520536.84160-1.0981010.583908.54790K562SUPV3L1
LPCAT3ENSG00000111684.6317.97860542.53600-0.770806.957305.78530K562TARDBP
LPCAT3ENSG00000111684.6282.62620408.53500-0.531603.135401.42810K562TBRG4
LPCAT3ENSG00000111684.6812.986601057.97740-0.380002.816301.41710K562TRIP6
LPCAT3ENSG00000111684.6198.26410379.92020-0.938306.831804.95960K562U2AF1
LPCAT3ENSG00000111684.6218.58510392.36420-0.844007.709106.36050K562U2AF2
LPCAT3ENSG00000111684.6339.64780568.16890-0.742306.074804.49600K562UCHL5
LPCAT3ENSG00000111684.6488.06750779.94110-0.676303.337601.87300K562UTP18
LPCAT3ENSG00000111684.6651.43560887.99870-0.446902.621501.76720K562WDR3
LPCAT3ENSG00000111684.6883.957301123.92050-0.346502.757801.89640K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LPCAT3 is not available on ENCORE database.





5 RBPs can affect the splicing of LPCAT3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELPCAT3ENSG00000111684.6chr12-709075570907937090165709034470909717091065-0.131000.008650.07238excludedK562AQR
A3SSLPCAT3ENSG00000111684.6chr12-7086295708644270862957086424708652870876690.090000.000010.00015longerK562AQR
A3SSLPCAT3ENSG00000111684.6chr12-7088632708884770886327088741709016570903440.087000.000050.00047longerK562AQR
MXELPCAT3ENSG00000111684.6chr12-708863270887417090165709034470877647087851709075570907930.164000.000020.001201includedHepG2FTO
MXELPCAT3ENSG00000111684.6chr12-70901657090344709075570907937087764708785170909717091065-0.256000.006750.046122includedK562AQR
MXELPCAT3ENSG00000111684.6chr12-70901657090344709075570907937088632708874170909717091065-0.106000.000400.033812includedHepG2NOLC1
MXELPCAT3ENSG00000111684.6chr12-70867597086907708758270876697086528708668770877647087851-0.302000.000010.000172includedHepG2U2AF2
MXELPCAT3ENSG00000111684.6chr12-709016570903447090755709079370886327088741709097170910650.133000.003090.082791includedHepG2SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LPCAT3 is not avaliable on ENCORE database.