LINC00894

General Information

Gene Name       : LINC00894
Gene ID             : ENSG00000235703.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LINC00894)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LINC00894ENSG00000235703.52.120.611.36ENCSR000AEF
HepG2LINC00894ENSG00000235703.51.951.171.56ENCSR985KAT
K562LINC00894ENSG00000235703.53.053.323.18ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LINC00894 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LINC00894 RNA is bound by 26 proteins.  







eCLIP assay for LINC00894 is not avaliable on ENCORE database.





26 proteins are bound to LINC00894 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX149158446149158567+intron-Distal3.457965.20425HepG2MATR3
chrX149157786149157866+intron-Distal4.568244.66737HepG2MATR3
chrX149134176149134245+intron-Distal4.341363.05187HepG2QKI
chrX149107934149108040+intron-Distal6.3322014.82037K562FAM120A
chrX149113458149113562+intron-Distal3.321164.25110K562CSTF2T
chrX149107206149107301+intron-Distal5.2419211.08680HepG2PRPF4
chrX149111376149111446+intron-Distal6.5737717.76348HepG2DDX59
chrX149108704149108776+intron-Distal6.1799012.71535K562GTF2F1
chrX149111446149111490+intron-Distal4.878514.42259HepG2DDX59
chrX149107136149107173+intron-Distal5.482875.67376K562FASTKD2
chrX149107596149107688+intron-Distal5.6850710.91459K562AKAP8L
chrX149108488149108551+intron-Distal6.7093728.49615HepG2FAM120A
chrX149107488149107532+intron-Distal4.8666012.85700K562FAM120A
chrX149108719149108787+intron-Distal,intron-Proximal4.6753618.24014K562CSTF2T
chrX149107986149108032+intron-Distal5.603996.82579K562DROSHA
chrX149108490149108537+intron-Distal4.414845.62019K562FASTKD2
chrX149111310149111356+intron-Distal5.096957.06641HepG2PCBP2
chrX149108175149108234+intron-Distal5.7115710.53672K562FAM120A
chrX149108512149108558+intron-Distal5.730086.58718K562DDX21
chrX149107230149107295+intron-Distal5.3905323.97850HepG2CSTF2T
chrX149107805149107855+intron-Distal5.8918417.45094K562CSTF2T
chrX149111371149111446+intron-Distal5.232604.57427HepG2PCBP2
chrX149108497149108564+intron-Distal6.5416019.27888K562GTF2F1
chrX149107220149107300+intron-Distal4.638898.35027K562FAM120A
chrX149108132149108228+intron-Distal4.7133514.57011HepG2PRPF4
chrX149107214149107289+intron-Distal4.699949.69101K562FASTKD2
chrX149108506149108556+intron-Distal3.627705.27894K562FTO
chrX149111375149111446+intron-Distal5.129188.66753K562ILF3
chrX149108169149108234+intron-Distal4.8978716.19879K562CSTF2T
chrX149107222149107299+intron-Distal5.9170448.77934HepG2FAM120A
chrX149159116149159187+intron-Distal3.233483.23296HepG2SUGP2
chrX149108159149108216+intron-Distal5.0551816.84592HepG2CSTF2T
chrX149108263149108311+intron-Distal4.200273.86024K562EWSR1
chrX149158733149158857+intron-Distal4.854486.62827HepG2SUGP2
chrX149107894149107923+intron-Distal4.166088.66215HepG2CSTF2T
chrX149130884149130961+intron-Distal,intron-Proximal3.766623.27569HepG2BCLAF1
chrX149107995149108080+intron-Distal4.9389610.22148K562AKAP8L
chrX149137426149137548+intron-Distal3.536024.23155HepG2MATR3
chrX149174494149174602+intron-Distal3.338973.84025HepG2SUGP2
chrX149108478149108555+intron-Distal,intron-Proximal6.6493326.60236K562CSTF2T
chrX149107948149107991+intron-Distal5.7509715.12508K562CSTF2T
chrX149107991149108085+intron-Distal5.4500411.03488HepG2GTF2F1
chrX149108030149108073+intron-Distal3.721969.05361HepG2FAM120A
chrX149107816149107864+intron-Distal4.999456.89521K562AKAP8L
chrX149107668149107843+intron-Distal4.984248.25763HepG2RBFOX2
chrX149122898149123019+intron-Distal4.1529516.77309HepG2HNRNPL
chrX149108734149108774+intron-Distal4.308166.42251K562FAM120A
chrX149111371149111445+intron-Distal4.621285.13071HepG2HNRNPK
chrX149107253149107304+intron-Distal4.089493.02711K562EWSR1
chrX149108501149108580+intron-Distal4.110089.51133K562AKAP8L
chrX149109802149109845+intron-Distal4.165253.96304K562CSTF2T
chrX149107220149107292+intron-Distal4.891927.57617HepG2GTF2F1
chrX149108272149108309+intron-Distal4.6684810.62681HepG2CSTF2T
chrX149108255149108317+intron-Distal4.145817.22938HepG2PRPF4
chrX149110182149110238+intron-Distal4.350095.01722K562CSTF2T
chrX149107939149108019+intron-Distal5.0148617.32479HepG2FAM120A
chrX149107482149107527+intron-Distal6.4965024.04669HepG2FAM120A
chrX149107807149107856+intron-Distal5.6523810.03041K562GTF2F1
chrX149108608149108657+intron-Distal4.935654.14689K562FTO
chrX149108005149108083+intron-Distal4.987736.70265K562EWSR1
chrX149108103149108151+intron-Distal4.6252712.12734HepG2CSTF2T
chrX149107593149107654+intron-Distal5.8628631.61706HepG2FAM120A
chrX149108721149108774+intron-Distal5.454147.22728K562AKAP8L
chrX149107609149107664+intron-Distal5.8893411.22447K562GTF2F1
chrX149174968149175034+intron-Distal4.104973.07980HepG2HNRNPM
chrX149108465149108575+intron-Distal,intron-Proximal3.084033.44511K562SAFB2
chrX149107601149107647+intron-Distal4.5816812.05948HepG2CSTF2T
chrX149107991149108097+intron-Distal6.6961126.70278K562GTF2F1
chrX149136677149136769+intron-Distal5.254327.72823K562PTBP1
chrX149108010149108095+intron-Distal5.9590516.91223HepG2PRPF4
chrX149113476149113579+intron-Distal3.558734.59965HepG2PRPF4
chrX149107799149107855+intron-Distal6.4149621.92164HepG2FAM120A
chrX149115660149115792+intron-Distal,intron-Proximal3.150625.40996HepG2PRPF4
chrX149111376149111446+intron-Distal5.027528.25079K562HNRNPK
chrX149108488149108606+intron-Distal5.1266119.72402K562FAM120A
chrX149108491149108550+intron-Distal3.248754.41086K562DROSHA
chrX149108496149108561+intron-Distal6.1539617.19364HepG2CSTF2T
chrX149107481149107533+intron-Distal6.023569.13283K562GTF2F1
chrX149107978149108083+intron-Distal5.907227.17413K562FTO
chrX149113497149113560+intron-Distal4.737245.32760K562DHX30
chrX149107893149107948+intron-Distal4.9305116.57228K562CSTF2T
chrX149107602149107672+intron-Distal6.1006118.30342K562CSTF2T
chrX149108718149108774+intron-Distal5.6290813.05566HepG2CSTF2T
chrX149107907149107991+intron-Distal6.1026116.45857K562GTF2F1
chrX149107216149107289+intron-Distal5.2339911.30843K562GTF2F1
chrX149107991149108102+intron-Distal5.4950836.41184K562CSTF2T
chrX149108216149108258+intron-Distal5.8401513.62736HepG2CSTF2T
chrX149107996149108090+intron-Distal6.1847239.82747HepG2CSTF2T
chrX149136671149136793+intron-Distal3.788008.57718HepG2PTBP1
chrX149107230149107297+intron-Distal5.2679318.75750K562CSTF2T
chrX149107953149107996+intron-Distal5.6868213.62736HepG2CSTF2T
chrX149111092149111125+intron-Distal3.909214.74496HepG2DDX59
chrX149157800149157910+intron-Distal3.606124.19039HepG2PTBP1
chrX149108040149108092+intron-Distal4.748579.58395K562FAM120A
chrX149107485149107528+intron-Distal4.609019.79356K562CSTF2T
chrX149108709149108776+intron-Distal4.190609.41150HepG2PRPF4
chrX149153089149153158+intron-Distal3.955193.07980HepG2HNRNPM
chrX149107672149107701+intron-Distal5.200449.08542K562CSTF2T
chrX149108272149108326+intron-Distal4.7371213.25878K562CSTF2T
chrX149107603149107648+intron-Distal5.490578.17882K562FAM120A
chrX149107231149107305+intron-Distal4.653953.77881HepG2PCBP2
chrX149107327149107353+intron-Distal4.599355.28165K562CSTF2T
chrX149107919149107976+intron-Distal4.100328.17769HepG2PRPF4
chrX149108474149108543+intron-Distal,intron-Proximal4.2681610.33751HepG2PRPF4
chrX149107218149107297+intron-Distal5.462446.89521K562AKAP8L
chrX149107587149107659+intron-Distal3.862285.52268HepG2RBFOX2
chrX149108235149108309+intron-Distal4.801966.11395HepG2GTF2F1
chrX149107813149107854+intron-Distal4.620576.06839HepG2PRPF4
chrX149107812149107842+intron-Distal4.224109.42344HepG2CSTF2T
chrX149107615149107651+intron-Distal4.313235.20041HepG2PRPF4
chrX149107809149107853+intron-Distal3.679465.33418K562FAM120A
chrX149108693149108782+intron-Distal,intron-Proximal5.3709232.25221HepG2FAM120A
chrX149108819149108926+intron-Proximal5.8898618.27873HepG2PRPF4
chrX149112228149112297+intron-Proximal4.305633.79000HepG2U2AF2
chrX149106916149107041+intron-Proximal5.118387.82868HepG2PRPF4
chrX149106962149107033+intron-Proximal6.2530420.45812HepG2CSTF2T
chrX149106973149107042+intron-Proximal3.803668.24255K562GTF2F1
chrX149106979149107029+intron-Proximal4.425399.12746K562FAM120A
chrX149109989149110061+intron-Proximal3.269545.17008K562CSTF2T
chrX149108821149108946+intron-Proximal5.0850031.89509K562CSTF2T
chrX149108805149108878+intron-Proximal6.3423322.52766HepG2CSTF2T
chrX149108821149108871+intron-Proximal4.3558010.36909HepG2FAM120A
chrX149116466149116539+intron-Proximal5.050935.90023K562SF3B4
chrX149109155149109157+intron-Proximal3.406214.45183HepG2CSTF2T
chrX149106971149107037+intron-Proximal4.1953917.59368K562CSTF2T
chrX149129104149129227+intron-Proximal3.846594.46864HepG2BCLAF1
chrX149108848149108913+intron-Proximal3.976838.96355K562FAM120A
chrX149108820149108913+intron-Proximal6.5339718.10790K562GTF2F1
chrX149106931149107046+intron-Proximal3.407414.79053K562FTO
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LINC00894 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LINC00894 is not available on ENCORE database.

  • 92 RBPs can affect the levels of LINC00894.  








The Knockdown/knockout RNA-Seq assay for LINC00894 is not available on ENCORE database.





92 RBPs can affect the gene expression of LINC00894 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LINC00894ENSG00000235703.150.98440134.47700-1.399207.935707.01360HepG2ACO1
LINC00894ENSG00000235703.156.70710134.42490-1.245206.706605.75330HepG2CKAP4
LINC00894ENSG00000235703.1128.0817058.375101.133504.447603.59350HepG2CPSF6
LINC00894ENSG00000235703.135.7555073.79240-1.045302.432001.84180HepG2DDX3X
LINC00894ENSG00000235703.1184.5484063.362201.542208.535007.50830HepG2DDX6
LINC00894ENSG00000235703.1220.3264060.938401.8541013.5111012.26940HepG2EIF2S1
LINC00894ENSG00000235703.1247.2688067.357101.8761015.0816013.60590HepG2EIF4A3
LINC00894ENSG00000235703.1127.9637065.556800.964802.920202.21400HepG2EIF4B
LINC00894ENSG00000235703.1220.60090162.102300.444402.010001.47960HepG2ETF1
LINC00894ENSG00000235703.153.76910131.38780-1.289006.328005.06490HepG2EWSR1
LINC00894ENSG00000235703.1101.8435048.683001.064803.589501.30610HepG2EXOSC5
LINC00894ENSG00000235703.197.3566045.408401.100203.546102.66130HepG2FUBP3
LINC00894ENSG00000235703.1193.9199063.027601.621306.730405.71250HepG2G3BP1
LINC00894ENSG00000235703.1137.1436066.884901.035804.029302.94660HepG2G3BP2
LINC00894ENSG00000235703.1156.2601094.910500.719202.536201.91480HepG2HNRNPA1
LINC00894ENSG00000235703.1177.58920113.060200.651403.038202.06530HepG2HNRNPA2B1
LINC00894ENSG00000235703.1291.16280105.566201.4636011.8615010.51390HepG2HNRNPC
LINC00894ENSG00000235703.1108.5456063.772900.767202.111301.49580HepG2HNRNPK
LINC00894ENSG00000235703.1207.18220112.052100.886605.924304.96980HepG2HNRNPL
LINC00894ENSG00000235703.1218.4670063.152101.7904012.9707011.73950HepG2HNRNPLL
LINC00894ENSG00000235703.1138.5761060.100601.205102.804501.81650HepG2IGF2BP3
LINC00894ENSG00000235703.1154.5698064.433201.262303.009201.95710HepG2KHSRP
LINC00894ENSG00000235703.170.07500123.49750-0.817502.652501.54170HepG2LARP7
LINC00894ENSG00000235703.1135.5449064.401201.073503.488602.39310HepG2MTPAP
LINC00894ENSG00000235703.1194.42150121.981300.672403.367802.52830HepG2NOL12
LINC00894ENSG00000235703.1148.1120062.315501.248904.271303.38620HepG2PABPC4
LINC00894ENSG00000235703.199.2415064.300200.626001.906501.38680HepG2PCBP1
LINC00894ENSG00000235703.124.6159059.48540-1.272902.631301.84260HepG2PRPF8
LINC00894ENSG00000235703.189.43260136.97020-0.615002.272601.70140HepG2PUS1
LINC00894ENSG00000235703.1151.8605070.847001.099905.331404.50490HepG2QKI
LINC00894ENSG00000235703.164.48070123.24090-0.934502.250001.60940HepG2RAVER1
LINC00894ENSG00000235703.1141.2841064.308101.135405.391604.47850HepG2RBM25
LINC00894ENSG00000235703.191.33310148.91450-0.705302.218901.33970HepG2RBM27
LINC00894ENSG00000235703.1126.2421067.839000.895903.483702.80160HepG2RECQL
LINC00894ENSG00000235703.157.2723098.89880-0.788102.271801.70890HepG2RPS19
LINC00894ENSG00000235703.174.69610140.19260-0.908303.288302.11310HepG2RPS5
LINC00894ENSG00000235703.144.39940187.85960-2.0810015.2613013.60370HepG2SF3A3
LINC00894ENSG00000235703.1186.03110111.662600.736303.968303.15110HepG2SLBP
LINC00894ENSG00000235703.135.9641071.10060-0.983302.173301.74020HepG2SRSF1
LINC00894ENSG00000235703.1132.6949057.851901.197606.480205.69940HepG2SRSF9
LINC00894ENSG00000235703.1190.80990132.895700.521702.458001.96900HepG2SSB
LINC00894ENSG00000235703.1128.0254063.933001.001704.311403.63510HepG2TAF15
LINC00894ENSG00000235703.198.56890203.84360-1.048303.730002.49910HepG2TBRG4
LINC00894ENSG00000235703.1131.2944058.719201.160805.764804.56990HepG2TIA1
LINC00894ENSG00000235703.167.88750132.66660-0.966602.592001.98270HepG2U2AF1
LINC00894ENSG00000235703.1215.85290120.428600.841803.369702.44670HepG2UBE2L3
LINC00894ENSG00000235703.166.96860160.84840-1.264107.153106.26630HepG2UTP3
LINC00894ENSG00000235703.1241.93770455.95250-0.914209.991108.99910K562AGGF1
LINC00894ENSG00000235703.1317.30790500.99900-0.658905.468103.97460K562AKAP8
LINC00894ENSG00000235703.1291.47950474.43340-0.702805.687904.73170K562AKAP8L
LINC00894ENSG00000235703.1328.80590497.78370-0.598305.461604.12440K562ATP5C1
LINC00894ENSG00000235703.1267.07180172.499200.630502.947902.04770K562BOP1
LINC00894ENSG00000235703.1360.07500544.90730-0.597705.336803.65760K562CCDC124
LINC00894ENSG00000235703.1380.79280240.051000.665604.681602.69090K562CEBPZ
LINC00894ENSG00000235703.1542.70550338.325900.681703.252002.08410K562CNOT7
LINC00894ENSG00000235703.1262.29630183.397100.516102.505901.75780K562CPSF6
LINC00894ENSG00000235703.1164.09580346.93380-1.0801011.8699010.62290K562DDX47
LINC00894ENSG00000235703.1262.38330510.56110-0.9604012.1456010.03800K562DKC1
LINC00894ENSG00000235703.193.76710177.30100-0.919004.408203.23870K562EFTUD2
LINC00894ENSG00000235703.142.02610168.44950-2.003006.199704.64990K562EIF3A
LINC00894ENSG00000235703.172.58810126.37410-0.799902.053801.36020K562EIF3G
LINC00894ENSG00000235703.1369.46920476.22680-0.366202.452701.56410K562EIF4G2
LINC00894ENSG00000235703.1268.73340158.209400.764204.231503.08030K562FTO
LINC00894ENSG00000235703.183.74560198.24960-1.243205.348604.54540K562FXR1
LINC00894ENSG00000235703.1325.87480231.545200.492903.026001.83260K562GLRX3
LINC00894ENSG00000235703.1404.93920205.944300.975409.758507.88980K562HNRNPA1
LINC00894ENSG00000235703.1497.25000316.700300.650803.140001.44910K562HNRNPAB
LINC00894ENSG00000235703.1393.27340199.607800.978308.477307.48340K562HNRNPC
LINC00894ENSG00000235703.1428.39440313.536200.450202.776901.71990K562HNRNPL
LINC00894ENSG00000235703.1301.37460503.51300-0.740506.529005.13740K562KIF1C
LINC00894ENSG00000235703.1131.26510198.91680-0.599702.885402.02580K562MAGOH
LINC00894ENSG00000235703.1272.44730481.96910-0.823006.800504.82670K562MAK16
LINC00894ENSG00000235703.1135.18960198.49960-0.554202.478501.60910K562MATR3
LINC00894ENSG00000235703.1231.67710564.05880-1.2837016.8486014.38050K562MBNL1
LINC00894ENSG00000235703.1546.99390243.445401.1678011.9306010.38610K562MTPAP
LINC00894ENSG00000235703.1208.28100395.36260-0.924605.719004.28920K562NAA15
LINC00894ENSG00000235703.185.99400174.84940-1.023803.493002.00430K562NONO
LINC00894ENSG00000235703.1463.76930270.456600.777908.998007.75680K562NSUN2
LINC00894ENSG00000235703.1137.61280214.87520-0.642903.300102.42040K562POLR2G
LINC00894ENSG00000235703.140.30500172.53590-2.0979013.4148011.75490K562PRPF8
LINC00894ENSG00000235703.1136.86130193.26690-0.497902.095301.50270K562PTBP1
LINC00894ENSG00000235703.1329.54920519.58930-0.656905.645604.48300K562PUF60
LINC00894ENSG00000235703.1272.13310470.54970-0.790006.008005.24490K562PUS1
LINC00894ENSG00000235703.1198.39680458.44500-1.208409.372708.30470K562RBM15
LINC00894ENSG00000235703.148.20240175.70270-1.8660011.431009.74060K562RPS19
LINC00894ENSG00000235703.1169.13840264.02520-0.642502.678901.69270K562RPS3
LINC00894ENSG00000235703.181.10430176.36240-1.120705.032603.23780K562RRP9
LINC00894ENSG00000235703.1111.96380191.45250-0.774003.493902.27040K562SAFB
LINC00894ENSG00000235703.1125.71350187.29580-0.575202.488101.67820K562SF3B4
LINC00894ENSG00000235703.1291.00040182.367700.674104.034702.48970K562SLBP
LINC00894ENSG00000235703.180.75180189.47610-1.230407.465306.31290K562SRSF1
LINC00894ENSG00000235703.1360.83250246.284700.550903.562502.22140K562SRSF7
LINC00894ENSG00000235703.1334.50080209.422600.675503.791402.28870K562STAU1
LINC00894ENSG00000235703.195.28330215.52260-1.177508.185806.76710K562SYNCRIP
LINC00894ENSG00000235703.1315.64130172.137300.874604.264803.08290K562TIAL1
LINC00894ENSG00000235703.1263.35840182.856200.526202.238501.40070K562TRIM56
LINC00894ENSG00000235703.1321.82760204.128000.656703.627301.98900K562TRIP6
LINC00894ENSG00000235703.1485.65980286.773500.759906.944905.86500K562UPF1
LINC00894ENSG00000235703.1305.75880477.04590-0.641702.834201.52110K562UTP18
LINC00894ENSG00000235703.1427.35270245.378800.800307.269605.81070K562WDR3
LINC00894ENSG00000235703.1328.45610255.194800.364002.149001.39610K562WDR43
LINC00894ENSG00000235703.1565.51910317.666800.832008.018106.42910K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LINC00894 is not available on ENCORE database.





3 RBPs can affect the splicing of LINC00894 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELINC00894ENSG00000235703.1chrX+149116295149116393149114075149115565149116523149116612-0.583000.002030.06732excludedK562FXR1
SELINC00894ENSG00000235703.1chrX+149111868149111980149110007149110065149112235149112318-0.707000.000160.03943excludedK562APOBEC3C
SELINC00894ENSG00000235703.1chrX+149116295149116393149114075149115565149116523149116612-0.360000.005060.06999excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LINC00894 is not avaliable on ENCORE database.