HOXB9

General Information

Gene Name       : HOXB9
Gene ID             : ENSG00000170689.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HOXB9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HOXB9ENSG00000170689.90.000.010.01ENCSR000AEF
HepG2HOXB9ENSG00000170689.90.000.000.00ENCSR985KAT
K562HOXB9ENSG00000170689.9135.06131.98133.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HOXB9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HOXB9 RNA is bound by 31 proteins.  







eCLIP assay for HOXB9 is not avaliable on ENCORE database.





31 proteins are bound to HOXB9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174669914246699231-3'-UTR,intron-Distal3.8319643.98039K562UPF1
chr174669855746698607-3'-UTR,intron-Distal4.7311630.21226K562UPF1
chr174670021146700259-3'-UTR,intron-Distal3.562886.20453K562TIA1
chr174670021246700278-3'-UTR,CDS,intron-Distal4.1749411.36558K562DDX6
chr174669873746698781-3'-UTR,intron-Distal3.6754027.53121K562UPF1
chr174669945746699518-3'-UTR,intron-Distal3.120505.24486K562IGF2BP1
chr174669866446698707-3'-UTR,intron-Distal3.5470212.23982K562DDX6
chr174670020846700255-3'-UTR,intron-Distal3.267469.93776K562PABPC4
chr174669855346698613-3'-UTR,intron-Distal3.726669.30162K562ZC3H11A
chr174669956346699610-3'-UTR,intron-Distal4.178006.31152K562IGF2BP2
chr174669928346699393-3'-UTR,intron-Distal3.5606627.39953K562IGF2BP1
chr174669852746698576-3'-UTR,intron-Distal5.6880342.07808K562CPEB4
chr174670005146700137-3'-UTR,intron-Distal4.9964237.35813K562PCBP1
chr174669855646698613-3'-UTR,intron-Distal4.0634512.81104K562GTF2F1
chr174669854046698607-3'-UTR,intron-Distal4.9295314.37123K562APOBEC3C
chr174669931546699338-3'-UTR,intron-Distal3.1881912.52825K562IGF2BP2
chr174669863946698681-3'-UTR,intron-Distal3.640618.44273K562PABPC4
chr174669855446698587-3'-UTR,intron-Distal3.2656926.89812K562TIA1
chr174669863746698716-3'-UTR,intron-Distal4.4475840.76075K562UPF1
chr174669900646699049-3'-UTR,intron-Distal3.325373.54074K562RBM15
chr174669889046698934-3'-UTR,intron-Distal3.399904.77298K562AKAP1
chr174669855646698611-3'-UTR,intron-Distal4.4734841.05276K562PABPC4
chr174669927546699334-3'-UTR,intron-Distal3.007786.79218K562PCBP1
chr174669888146698926-3'-UTR,intron-Distal3.530153.51298K562AKAP8L
chr174669906046699142-3'-UTR,intron-Distal3.7413345.50724K562UPF1
chr174669878146698832-3'-UTR,intron-Distal3.6228724.37694K562UPF1
chr174669896246699001-3'-UTR,intron-Distal4.3007316.51329K562UPF1
chr174669901446699060-3'-UTR,intron-Distal3.4848015.11366K562UPF1
chr174669916046699192-3'-UTR,intron-Distal3.105413.13141K562RBM15
chr174669889746698957-3'-UTR,intron-Distal3.311367.00390K562RBM15
chr174669854746698613-3'-UTR,intron-Distal3.9229835.47044K562DDX6
chr174669867646698719-3'-UTR,intron-Distal3.505176.57620K562ZC3H11A
chr174669889846698936-3'-UTR,intron-Distal3.047366.56095K562IGF2BP2
chr174669880946698851-3'-UTR,intron-Distal3.507784.14151K562PCBP1
chr174669917346699229-3'-UTR,intron-Distal3.729226.44222K562APOBEC3C
chr174669868146698718-3'-UTR,intron-Distal3.261926.74069K562PABPC4
chr174669915346699253-3'-UTR,intron-Distal3.1616828.60474K562PUM2
chr174669873046698773-3'-UTR,intron-Distal3.352098.65582K562FAM120A
chr174669922046699280-3'-UTR,intron-Distal3.1280013.85331K562IGF2BP1
chr174669863846698711-3'-UTR,intron-Distal3.215433.95503K562APOBEC3C
chr174669907546699118-3'-UTR,intron-Distal3.215883.41981K562HNRNPK
chr174670021446700236-3'-UTR,intron-Distal3.459699.82186K562UPF1
chr174669856146698612-3'-UTR,intron-Distal3.477596.23800K562XRN2
chr174669909746699133-3'-UTR,intron-Distal3.402344.80505K562PCBP1
chr174669984446699898-3'-UTR,intron-Distal3.377459.87144K562IGF2BP2
chr174669927146699314-3'-UTR,intron-Distal3.1186416.32565K562IGF2BP2
chr174669921646699271-3'-UTR,intron-Distal3.7058014.98122K562IGF2BP2
chr174669857646698607-3'-UTR,intron-Distal3.478896.77254K562CPEB4
chr174669888446698962-3'-UTR,intron-Distal3.8852935.68662K562UPF1
chr174669856246698610-3'-UTR,intron-Distal3.2321220.06844K562CSTF2T
chr174669916946699223-3'-UTR,intron-Distal3.1767211.51129K562PCBP1
chr174669981346699844-3'-UTR,intron-Distal,intron-Proximal3.7283310.21298K562IGF2BP2
chr174669899046699038-3'-UTR,intron-Distal4.151727.43791K562IGF2BP2
chr174669914846699216-3'-UTR,intron-Distal4.3230621.00845K562IGF2BP2
chr174670364646703750-5'-UTR,intron-Distal3.9228217.75696K562PCBP1
chr174670370346703746-5'-UTR,intron-Distal3.690436.13299K562GTF2F1
chr174670364946703751-5'-UTR,intron-Distal3.9176613.32012K562DDX6
chr174670370646703747-5'-UTR,intron-Distal3.103966.61633K562NONO
chr174670369846703749-5'-UTR,intron-Distal3.231517.28897K562METAP2
chr174670364946703698-5'-UTR,intron-Distal3.586728.34487K562METAP2
chr174670369346703751-5'-UTR,intron-Distal3.4806618.19195K562CSTF2T
chr174670355346703742-5'-UTR,CDS,intron-Distal3.0412721.08672K562DDX3X
chr174670341646703470-CDS,intron-Distal3.682734.73981K562METAP2
chr174670047146700497-CDS,intron-Distal4.717537.10067K562YBX3
chr174670340046703458-CDS,intron-Distal3.962486.15678K562GEMIN5
chr174670311346703155-CDS,intron-Distal3.849907.40140K562YBX3
chr174670047646700522-CDS,intron-Distal4.743364.65563K562AQR
chr174670311046703151-CDS,intron-Distal4.5595511.09331K562RBM15
chr174670291446703024-intron-Distal4.9847025.84807K562CSTF2T
chr174670103146701086-intron-Distal3.797883.84914K562SLTM
chr174670205446702099-intron-Distal3.5432910.30353K562CSTF2T
chr174670289846703016-intron-Distal3.049616.97151K562SAFB2
chr174670252446702610-intron-Distal4.1926116.87930K562NONO
chr174669845846698480-intron-Distal,intron-Proximal3.997426.47842K562SLTM
chr174670068346700719-intron-Distal3.869213.28464K562EWSR1
chr174670258146702621-intron-Distal3.432887.89276K562CSTF2T
chr174670280846702878-intron-Distal3.230795.10348K562EWSR1
chr174670291946702973-intron-Distal3.421294.19384K562TAF15
chr174670205146702097-intron-Distal3.127243.39478K562TAF15
chr174669845346698510-intron-Distal,intron-Proximal3.278013.87218K562SAFB2
chr174670233646702381-intron-Distal3.789818.35508K562NONO
chr174670253446702567-intron-Distal3.690497.62523K562TIA1
chr174670291746702953-intron-Distal3.525344.44955K562LSM11
chr174670289246703015-intron-Distal4.3067014.50888K562SLTM
chr174670241946702450-intron-Distal3.428424.59961K562NONO
chr174670102946701104-intron-Distal3.836707.09842K562NONO
chr174670280646702846-intron-Distal3.663775.35122K562NONO
chr174670233346702391-intron-Distal3.917833.94652K562FUS
chr174670291546702956-intron-Distal3.753193.85148K562GTF2F1
chr174670289146702981-intron-Distal3.6839610.17572K562NONO
chr174670390846703948-intron-Distal,intron-Proximal3.433453.77567K562NONO
chr174670255246702611-intron-Distal4.888765.55667K562EWSR1
chr174670176246701822-intron-Distal3.180683.41981K562HNRNPK
chr174670232746702371-intron-Distal3.851335.06168K562SLTM
chr174669846446698499-intron-Distal,intron-Proximal3.815146.86777K562CSTF2T
chr174670266146702710-intron-Distal3.543985.06168K562SLTM
chr174670293446702952-intron-Distal3.676903.23793K562GEMIN5
chr174670305646703114-intron-Distal3.901116.80869K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HOXB9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HOXB9 is not available on ENCORE database.

  • 57 RBPs can affect the levels of HOXB9.  








The Knockdown/knockout RNA-Seq assay for HOXB9 is not available on ENCORE database.





57 RBPs can affect the gene expression of HOXB9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HOXB9ENSG00000170689.80.000007.75900-99999.999992.269701.52470HepG2LARP4
HOXB9ENSG00000170689.814.433300.0000099999.999904.348103.46600HepG2TARDBP
HOXB9ENSG00000170689.88148.9856010598.58620-0.379203.692902.25350K562ABCF1
HOXB9ENSG00000170689.810972.6735013665.17470-0.316603.366602.64480K562AKAP8L
HOXB9ENSG00000170689.85403.333007177.98390-0.409705.348303.54510K562APOBEC3C
HOXB9ENSG00000170689.83887.786305840.50450-0.587108.858707.90590K562AQR
HOXB9ENSG00000170689.82589.232703207.68980-0.309005.344103.99440K562BCLAF1
HOXB9ENSG00000170689.83371.677104491.23750-0.413603.978802.42940K562CIRBP
HOXB9ENSG00000170689.86727.478508495.78340-0.336706.978205.18840K562CPEB4
HOXB9ENSG00000170689.86296.781708373.81860-0.411306.273005.09520K562CPSF6
HOXB9ENSG00000170689.85337.9152010002.84410-0.9061031.9250029.22860K562CELF1
HOXB9ENSG00000170689.82757.437103523.25370-0.353604.111202.80720K562DDX3X
HOXB9ENSG00000170689.85976.424608791.65440-0.5569018.4451016.90100K562DDX47
HOXB9ENSG00000170689.83338.199504184.75380-0.326102.905001.52280K562DNAJC21
HOXB9ENSG00000170689.81991.082302934.47890-0.559606.979105.47650K562EFTUD2
HOXB9ENSG00000170689.85710.453604413.756800.371506.870805.81170K562EIF2S2
HOXB9ENSG00000170689.81845.987803141.59470-0.767109.311907.26600K562EIF3D
HOXB9ENSG00000170689.82473.511203010.08340-0.283203.596302.69650K562EIF3G
HOXB9ENSG00000170689.82893.003303680.82500-0.347503.543502.61770K562EIF4A3
HOXB9ENSG00000170689.83941.041503314.681800.249602.794701.63320K562EIF4B
HOXB9ENSG00000170689.86883.894208134.85770-0.240903.541602.48010K562EIF4G2
HOXB9ENSG00000170689.83772.397303212.918400.231502.598201.35130K562EWSR1
HOXB9ENSG00000170689.85681.912307221.70530-0.346002.987102.03590K562FTO
HOXB9ENSG00000170689.83120.610103827.88500-0.294704.432003.69060K562FXR1
HOXB9ENSG00000170689.85583.543106548.73110-0.230002.815001.66550K562GLRX3
HOXB9ENSG00000170689.813583.3403010328.879300.395104.433803.43200K562HSPD1
HOXB9ENSG00000170689.86199.710404655.189100.413305.170503.18540K562LARP7
HOXB9ENSG00000170689.86078.630704875.748700.318002.852201.37550K562LIN28B
HOXB9ENSG00000170689.83190.420704404.11140-0.465106.396405.09350K562MAGOH
HOXB9ENSG00000170689.85866.468407803.93190-0.411705.493104.23360K562METAP2
HOXB9ENSG00000170689.86838.577708670.87940-0.342503.770902.45440K562MSI2
HOXB9ENSG00000170689.85136.919306885.13860-0.4226012.0413010.48950K562MTPAP
HOXB9ENSG00000170689.82865.283703918.29130-0.451505.747104.32780K562PCBP2
HOXB9ENSG00000170689.85799.727607519.71720-0.374703.238002.33770K562PCBP3
HOXB9ENSG00000170689.84057.679805767.59830-0.507305.738704.58740K562POLR2G
HOXB9ENSG00000170689.81611.812902855.59460-0.8251013.8614012.17160K562PRPF8
HOXB9ENSG00000170689.85328.255504310.483200.305703.188302.20710K562PSIP1
HOXB9ENSG00000170689.83263.933504278.98350-0.390704.143903.34760K562PTBP1
HOXB9ENSG00000170689.86371.861708875.68750-0.478106.976005.67690K562PUF60
HOXB9ENSG00000170689.87341.962809249.98710-0.333306.244304.78400K562PUM2
HOXB9ENSG00000170689.87296.3717013552.43580-0.8933018.5397017.16500K562PUS1
HOXB9ENSG00000170689.810608.6151013204.53170-0.315805.137304.35210K562RBM15
HOXB9ENSG00000170689.86794.532005578.075400.284503.028701.34310K562RBM17
HOXB9ENSG00000170689.83089.242604102.20470-0.409104.509403.40640K562RBM22
HOXB9ENSG00000170689.83236.755303932.59920-0.280903.010501.97380K562RCC2
HOXB9ENSG00000170689.81694.723002908.49540-0.779209.984308.41770K562RPS19
HOXB9ENSG00000170689.86497.117905139.952100.337903.909502.61110K562SAFB
HOXB9ENSG00000170689.86147.013507548.61000-0.296304.997803.92940K562SF3A3
HOXB9ENSG00000170689.85403.356007603.55450-0.492804.911403.58970K562SF3B1
HOXB9ENSG00000170689.85061.652703728.015300.441105.564803.96500K562SRFBP1
HOXB9ENSG00000170689.85607.931007733.71520-0.4637017.7352015.65790K562SRPK2
HOXB9ENSG00000170689.81197.986004195.00100-1.8081074.7742071.39570K562SRSF1
HOXB9ENSG00000170689.84521.942403104.901800.542304.540202.84500K562SSB
HOXB9ENSG00000170689.85452.415804404.394300.307903.124002.10590K562TRIM56
HOXB9ENSG00000170689.87138.565808111.45500-0.184302.903202.16770K562UPF1
HOXB9ENSG00000170689.88200.7196010523.19570-0.359803.134601.84990K562UTP3
HOXB9ENSG00000170689.86485.675007217.54680-0.154302.282301.50690K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HOXB9 is not available on ENCORE database.






No RBPs affect the alternative splcing events of HOXB9 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HOXB9 is not avaliable on ENCORE database.