HCG18

General Information

Gene Name       : HCG18
Gene ID             : ENSG00000231074.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HCG18)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HCG18ENSG00000231074.816.3216.6416.48ENCSR000AEF
HepG2HCG18ENSG00000231074.825.5536.0630.80ENCSR985KAT
K562HCG18ENSG00000231074.824.2528.8426.55ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HCG18 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HCG18 RNA is bound by 37 proteins.  







eCLIP assay for HCG18 is not avaliable on ENCORE database.





37 proteins are bound to HCG18 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63026960030269701-intron-Distal4.069933.41398HepG2CSTF2
chr63029363930293744-intron-Distal4.4582917.87500HepG2PRPF4
chr63029422630294269-intron-Distal,intron-Proximal3.087534.78919HepG2RBM15
chr63028181730281881-intron-Distal3.237645.59320HepG2SUGP2
chr63025858630258651-intron-Distal3.215506.00731HepG2KHSRP
chr63026922330269314-intron-Distal3.620415.35818K562SAFB2
chr63029445430294543-intron-Distal4.400534.42734K562UCHL5
chr63026961430269744-intron-Distal4.033818.40926K562SAFB2
chr63027744930277525-intron-Distal3.342756.27063HepG2HNRNPL
chr63029358430293689-intron-Distal3.279673.39478K562TAF15
chr63026983630269923-intron-Distal3.091403.34630K562SAFB2
chr63025879430258848-intron-Distal4.760173.98292HepG2XRCC6
chr63028531230285403-intron-Distal3.514665.14628K562TARDBP
chr63026176230261852-intron-Distal3.7297416.33991HepG2HNRNPL
chr63029357130293711-intron-Distal3.821317.32016K562GTF2F1
chr63029356430293640-intron-Distal3.125063.40381HepG2DROSHA
chr63029360030293693-intron-Distal4.319153.58731HepG2PCBP2
chr63025967630259772-intron-Distal3.221354.09267K562FAM120A
chr63029448830294579-intron-Distal4.235563.88813HepG2DGCR8
chr63026818530268279-intron-Distal3.844246.57828K562SAFB2
chr63028522530285287-intron-Distal4.8793333.45102HepG2RBFOX2
chr63029357330293639-intron-Distal3.203527.88817HepG2PRPF4
chr63026943930269512-intron-Distal3.747256.87558HepG2HLTF
chr63026038130260391-intron-Distal3.4979610.12893HepG2U2AF2
chr63026501030265134-intron-Distal3.176545.98546K562SAFB2
chr63029454030294636-intron-Distal3.817476.42503K562DDX3X
chr63029443930294561-intron-Distal3.7941611.03637HepG2PRPF4
chr63027964630279718-intron-Distal5.203908.56566HepG2SUGP2
chr63026900930269098-intron-Distal3.591109.10256HepG2HLTF
chr63029446530294608-intron-Distal3.299557.75173HepG2GTF2F1
chr63029421330294289-intron-Distal,intron-Proximal3.704225.18989HepG2PRPF4
chr63027561430275670-intron-Distal3.678257.74580HepG2MATR3
chr63029364330293749-intron-Distal5.174947.26171HepG2GTF2F1
chr63026486830264956-intron-Distal3.119847.81539HepG2HLTF
chr63025816230258235-intron-Distal4.119354.60713HepG2XPO5
chr63025898530259102-intron-Distal,intron-Proximal4.369143.92684K562KHSRP
chr63026748630267577-intron-Distal4.137556.52185HepG2HLTF
chr63028375930283823-intron-Distal4.525275.78279HepG2ILF3
chr63029407430294146-intron-Distal,intron-Proximal3.870313.86479HepG2PRPF8
chr63026487430264988-intron-Distal3.290959.21831K562SAFB2
chr63025775230257829-intron-Distal3.955753.33164K562SAFB2
chr63025693130257008-intron-Distal,intron-Proximal3.895748.52328HepG2HLTF
chr63027699930277049-intron-Distal3.633076.71645HepG2PTBP1
chr63027583730275872-intron-Distal4.729535.37222HepG2MATR3
chr63027034830270442-intron-Distal3.912353.06084HepG2HNRNPK
chr63025685430256995-intron-Distal,intron-Proximal4.982056.44435K562SAFB2
chr63026032030260381-intron-Distal3.8987714.84707HepG2U2AF2
chr63027158130271654-intron-Distal3.856103.25414K562RBFOX2
chr63027729030277351-intron-Distal3.356235.01093HepG2QKI
chr63026524930265379-intron-Distal3.911706.37872K562SAFB2
chr63028515030285317-intron-Distal3.103693.58872K562RBFOX2
chr63026390630263994-intron-Distal,intron-Proximal3.705635.80880HepG2GRWD1
chr63027740230277500-intron-Distal3.232123.86715K562HNRNPK
chr63028423630284313-intron-Distal3.288135.58948HepG2HNRNPM
chr63027158730271648-intron-Distal3.826144.24143HepG2RBFOX2
chr63029355230293640-intron-Distal3.702297.46743HepG2GTF2F1
chr63029456130294635-intron-Distal5.8056213.91663HepG2NCBP2
chr63026396830264058-intron-Distal,intron-Proximal3.126976.96734HepG2SF3A3
chr63025909430259174-intron-Distal,intron-Proximal3.688244.64228HepG2KHSRP
chr63026814530268191-intron-Distal3.640555.04128HepG2HLTF
chr63027699830277045-intron-Distal4.039475.63677K562PTBP1
chr63027620630276285-intron-Distal3.239003.71597K562MATR3
chr63025731130257387-intron-Distal4.220304.02395HepG2KHSRP
chr63029405130294133-intron-Distal,intron-Proximal3.830008.68344HepG2RBM22
chr63029367430293730-intron-Distal3.135383.46580HepG2CSTF2T
chr63028346830283543-intron-Distal3.225364.97937HepG2HNRNPM
chr63027901430279070-intron-Distal3.355724.95510HepG2MATR3
chr63026390730264000-intron-Distal,intron-Proximal3.671214.77403HepG2SRSF1
chr63025897930259038-intron-Distal5.8328515.35953HepG2QKI
chr63027195530272015-intron-Distal3.572924.08242HepG2PTBP1
chr63027742330277504-intron-Distal3.246737.09164HepG2PCBP2
chr63029446330294584-intron-Distal3.077446.31730K562GTF2F1
chr63027900130279087-intron-Distal3.210063.29499HepG2PRPF4
chr63025858730258642-intron-Distal4.0428722.96023HepG2U2AF2
chr63028179430281882-intron-Distal3.019306.21294HepG2HNRNPM
chr63026838730268469-intron-Distal4.241185.00594K562SAFB2
chr63029446230294561-intron-Distal3.8886613.32028HepG2NCBP2
chr63029056330290651-intron-Distal3.8756712.14839HepG2ILF3
chr63027553430275607-intron-Distal3.288853.50045HepG2SFPQ
chr63026897930269057-intron-Distal4.319244.95197K562SAFB2
chr63029441530294497-intron-Distal3.786074.60558HepG2SRSF9
chr63027620930276266-intron-Distal4.851268.36737HepG2MATR3
chr63026028130260342-intron-Distal4.190133.20319K562UPF1
chr63026748730267586-intron-Distal3.444185.10657K562SAFB2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HCG18 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HCG18 is not available on ENCORE database.

  • 75 RBPs can affect the levels of HCG18.  








The Knockdown/knockout RNA-Seq assay for HCG18 is not available on ENCORE database.





75 RBPs can affect the gene expression of HCG18 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HCG18ENSG00000231074.4682.93100919.59570-0.429302.323501.46680HepG2BCCIP
HCG18ENSG00000231074.41470.960101037.495900.503605.200304.41160HepG2BOP1
HCG18ENSG00000231074.41177.21800952.472700.305501.956001.36690HepG2CPSF6
HCG18ENSG00000231074.4665.654201086.26710-0.706506.857205.91450HepG2DDX3X
HCG18ENSG00000231074.4708.34710932.99560-0.397402.219201.66030HepG2DDX6
HCG18ENSG00000231074.4592.51460824.24930-0.476205.149104.21740HepG2DNAJC21
HCG18ENSG00000231074.41005.94550667.090400.592505.326604.10270HepG2EIF3D
HCG18ENSG00000231074.41501.78430965.145600.637804.715603.83160HepG2EIF4B
HCG18ENSG00000231074.41404.267501134.331600.307903.380102.47020HepG2EIF4G1
HCG18ENSG00000231074.42361.254301769.284100.416307.438106.53230HepG2ETF1
HCG18ENSG00000231074.4799.21820625.361800.353802.557301.80040HepG2FUBP3
HCG18ENSG00000231074.4776.953801030.56000-0.407505.081603.79800HepG2HDGF
HCG18ENSG00000231074.41298.758601030.367500.333902.250501.67690HepG2HNRNPLL
HCG18ENSG00000231074.4590.23060771.12830-0.385702.718501.77570HepG2HNRNPM
HCG18ENSG00000231074.41280.03050943.153700.440503.456002.70990HepG2IGF2BP2
HCG18ENSG00000231074.41141.03850913.627900.320602.077201.42450HepG2NSUN2
HCG18ENSG00000231074.4354.21210694.37130-0.971104.217903.10510HepG2PABPC1
HCG18ENSG00000231074.41192.28040985.568200.274602.672801.91060HepG2PRPF4
HCG18ENSG00000231074.4778.454101088.39700-0.483502.106501.57650HepG2PUF60
HCG18ENSG00000231074.41615.222201155.348600.483309.879408.90460HepG2PUM1
HCG18ENSG00000231074.41305.83830951.878000.456002.620801.96210HepG2RBM25
HCG18ENSG00000231074.41015.98460762.484700.414002.194301.48120HepG2RPS3A
HCG18ENSG00000231074.4656.86580818.83750-0.318003.061502.38990HepG2SAFB2
HCG18ENSG00000231074.41265.157101074.594100.235402.051701.50260HepG2SRSF5
HCG18ENSG00000231074.41324.403101063.264100.316702.513601.68380HepG2TUFM
HCG18ENSG00000231074.4712.19290956.04080-0.424802.756802.12880HepG2U2AF1
HCG18ENSG00000231074.4578.11340886.02910-0.616004.855103.90340HepG2XRN2
HCG18ENSG00000231074.41003.586001459.92190-0.5407011.9253010.98760HepG2ZNF622
HCG18ENSG00000231074.4394.70510899.46730-1.188309.521508.54950K562AGGF1
HCG18ENSG00000231074.4622.81100988.23290-0.666104.845303.45660K562AKAP8
HCG18ENSG00000231074.4506.81170935.90060-0.884906.675705.62860K562AKAP8L
HCG18ENSG00000231074.41222.767601792.88290-0.552103.389202.75340K562AQR
HCG18ENSG00000231074.4679.70690981.91730-0.530702.569401.69130K562ATP5C1
HCG18ENSG00000231074.4890.912801079.79760-0.277402.810201.84250K562BCLAF1
HCG18ENSG00000231074.4584.68730861.61330-0.559405.627304.51670K562CPSF6
HCG18ENSG00000231074.4575.13580819.18760-0.510305.285803.76110K562CSTF2
HCG18ENSG00000231074.4974.127501185.37260-0.283202.848601.61840K562DDX21
HCG18ENSG00000231074.4707.205801007.32090-0.510303.198902.24880K562DKC1
HCG18ENSG00000231074.4761.86010981.43770-0.365402.322001.48600K562EFTUD2
HCG18ENSG00000231074.41571.982901050.939900.580805.158003.69010K562EIF3D
HCG18ENSG00000231074.4906.44890715.070000.342002.656901.87440K562EIF3G
HCG18ENSG00000231074.41652.738501995.35390-0.271802.174101.33670K562EIF4G2
HCG18ENSG00000231074.4382.42280509.14670-0.412902.849701.53610K562EWSR1
HCG18ENSG00000231074.41072.56340606.614000.8221014.7877013.50100K562FXR1
HCG18ENSG00000231074.4554.04220749.68030-0.436303.485501.83960K562G3BP1
HCG18ENSG00000231074.41653.739002010.93180-0.282102.230201.54810K562GRSF1
HCG18ENSG00000231074.4343.11130682.23750-0.991605.148303.31580K562HNRNPA2B1
HCG18ENSG00000231074.41097.83240788.443500.477504.682103.92580K562HNRNPC
HCG18ENSG00000231074.4660.159101107.35580-0.746207.458705.81040K562HNRNPM
HCG18ENSG00000231074.41479.990001166.937000.342803.712002.67610K562HNRNPU
HCG18ENSG00000231074.41494.684301825.30630-0.288302.088001.39400K562HSPD1
HCG18ENSG00000231074.4585.44170784.06760-0.421502.366801.43800K562IGF2BP2
HCG18ENSG00000231074.4505.40530993.35010-0.974906.132904.79650K562KIF1C
HCG18ENSG00000231074.4507.95370702.44350-0.467702.381501.52460K562KRR1
HCG18ENSG00000231074.4570.55990950.77860-0.736704.559003.07560K562MAK16
HCG18ENSG00000231074.4380.01450779.97100-1.037407.494405.76780K562NAA15
HCG18ENSG00000231074.4412.31340582.52990-0.498602.972901.70100K562NCBP2
HCG18ENSG00000231074.41045.880901285.35580-0.297403.983403.10740K562NSUN2
HCG18ENSG00000231074.4343.95040564.71380-0.715304.418002.09750K562PABPC4
HCG18ENSG00000231074.4278.48620596.85700-1.099805.918904.30620K562PABPN1
HCG18ENSG00000231074.4626.37730805.51940-0.362902.839401.47340K562PCBP1
HCG18ENSG00000231074.41213.529601528.32340-0.332702.552301.76970K562PPIG
HCG18ENSG00000231074.4425.46560709.68740-0.738103.081801.51660K562PPP1R8
HCG18ENSG00000231074.4643.37470955.04880-0.569904.810003.82540K562PRPF8
HCG18ENSG00000231074.41220.73180800.658700.608408.179607.07870K562PTBP1
HCG18ENSG00000231074.4363.46890928.41310-1.3529010.972409.94010K562PUS1
HCG18ENSG00000231074.4370.42820904.38620-1.287709.969308.87110K562RBM15
HCG18ENSG00000231074.41031.09650807.953100.351702.416301.40830K562NELFE
HCG18ENSG00000231074.4689.16010452.252200.607604.290103.00920K562RPS3
HCG18ENSG00000231074.4320.94630626.84340-0.965804.512602.82740K562SNRNP200
HCG18ENSG00000231074.41100.495901299.34490-0.239602.582601.67270K562SRPK2
HCG18ENSG00000231074.41197.59770784.904000.609507.745906.56910K562SRSF1
HCG18ENSG00000231074.4554.03820741.26180-0.420002.890201.81410K562SRSF5
HCG18ENSG00000231074.4821.806201057.87320-0.364303.980602.55630K562SRSF7
HCG18ENSG00000231074.4544.05370737.60130-0.439104.103302.49810K562SSB
HCG18ENSG00000231074.4457.82550749.85920-0.711802.926701.44750K562SUPT6H
HCG18ENSG00000231074.4551.82110924.84610-0.745006.691805.05780K562SUPV3L1
HCG18ENSG00000231074.41182.10900940.382100.329902.923902.07840K562SYNCRIP
HCG18ENSG00000231074.4575.47460751.90180-0.385802.520801.48780K562TRA2A
HCG18ENSG00000231074.4448.82840941.05470-1.068103.456201.95860K562UTP18
HCG18ENSG00000231074.41485.287602020.03900-0.443602.682601.83490K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HCG18 is not available on ENCORE database.





11 RBPs can affect the splicing of HCG18 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHCG18ENSG00000231074.4chr6-3029392730294040302639083026401430294130302946430.099000.003600.08215includedK562AKAP8L
SEHCG18ENSG00000231074.4chr6-3028204530282259302639083026401430294130302946430.355000.000000.00167includedK562HNRNPM
SEHCG18ENSG00000231074.4chr6-302820453028225930263908302640143029413030294643-0.224000.005870.09928excludedHepG2SRSF1
SEHCG18ENSG00000231074.4chr6-302622473026274130259151302603763026390830264014-0.099000.004120.07642excludedHepG2SRSF1
SEHCG18ENSG00000231074.4chr6-302820453028225930263908302640143029413030294643-0.171000.000150.00849excludedK562HNRNPU
SEHCG18ENSG00000231074.4chr6-302820453028225930263908302640143029413030294643-0.296000.000280.01604excludedHepG2HNRNPU
RIHCG18ENSG00000231074.4chr6-3025878230262741302587823026037630262247302627410.222000.001420.03028includedHepG2PCBP2
RIHCG18ENSG00000231074.4chr6-3025878230262741302587823026037630262247302627410.210000.000540.00788includedHepG2QKI
RIHCG18ENSG00000231074.4chr6-3025878230262741302587823026037630262247302627410.230000.000970.01159includedHepG2TAF15
RIHCG18ENSG00000231074.4chr6-3025878230262741302587823026037630262247302627410.212000.003780.05447includedHepG2G3BP1
RIHCG18ENSG00000231074.4chr6-302587823026274130258782302603763026224730262741-0.196000.000350.04778excludedK562HNRNPL
RIHCG18ENSG00000231074.4chr6-3025878230262741302587823026037630262247302627410.295000.000050.00095includedK562EFTUD2
RIHCG18ENSG00000231074.4chr6-302587823026274130258782302603763026224730262741-0.192000.006920.08543excludedK562FXR1
MXEHCG18ENSG00000231074.4chr6-30282045302822593029392730294040302639083026401430294130302946430.250000.002580.080691includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HCG18 is not avaliable on ENCORE database.