GOLPH3

General Information

Gene Name       : GOLPH3
Gene ID             : ENSG00000113384.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GOLPH3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GOLPH3ENSG00000113384.1344.4737.0440.75ENCSR000AEF
HepG2GOLPH3ENSG00000113384.1353.4882.5268.00ENCSR985KAT
K562GOLPH3ENSG00000113384.1348.0049.2748.64ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GOLPH3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GOLPH3 RNA is bound by 33 proteins.  







eCLIP assay for GOLPH3 is not avaliable on ENCORE database.





33 proteins are bound to GOLPH3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr53212496732124984-3'-UTR,intron-Distal5.117057.45115K562FAM120A
chr53212596632126038-3'-UTR,intron-Distal5.1186334.81967K562IGF2BP1
chr53213564432135727-3'-UTR,CDS,intron-Distal,intron-Proximal3.788994.45914HepG2PRPF8
chr53212567232125729-3'-UTR,intron-Distal4.8283718.20263K562FAM120A
chr53212597732126038-3'-UTR,intron-Distal3.292764.79504HepG2IGF2BP1
chr53212643732126530-3'-UTR,CDS,intron-Distal,intron-Proximal3.574929.04833K562RBM15
chr53212558532125645-3'-UTR,intron-Distal3.3914510.64102K562FAM120A
chr53212559032125642-3'-UTR,intron-Distal4.115943.65261HepG2TIA1
chr53212496732125013-3'-UTR,intron-Distal4.504727.41486HepG2FUBP3
chr53212547432125536-3'-UTR,intron-Distal3.0965616.43530K562FAM120A
chr53212503932125074-3'-UTR,intron-Distal4.072896.86430K562PUM2
chr53214380132143872-3'-UTR,CDS,intron-Distal,intron-Proximal3.081534.99341K562KHSRP
chr53214385432143931-3'-UTR,CDS,intron-Distal,intron-Proximal3.355447.74581HepG2BCLAF1
chr53212558532125651-3'-UTR,intron-Distal3.169627.63975K562PUM1
chr53214384132143858-3'-UTR,CDS,intron-Distal,intron-Proximal5.049854.48002K562AQR
chr53212483232124878-3'-UTR,intron-Distal3.848226.04577K562FAM120A
chr53212567332125726-3'-UTR,intron-Distal3.942317.01022HepG2FUBP3
chr53212495332125000-3'-UTR,intron-Distal3.3768210.63675K562PUM2
chr53212487832124931-3'-UTR,intron-Distal3.6919011.19057K562FAM120A
chr53212603832126061-3'-UTR,intron-Distal4.5709824.01162K562IGF2BP1
chr53212503232125071-3'-UTR,intron-Distal3.302534.39733HepG2FUBP3
chr53212658632126625-3'-UTR,CDS,intron-Distal,intron-Proximal3.571163.34231K562RBM15
chr53212559132125647-3'-UTR,intron-Distal3.2605931.21847K562PUM2
chr53214392432143995-3'-UTR,CDS,intron-Distal,intron-Proximal3.389928.45358K562U2AF2
chr53212593232126090-3'-UTR,intron-Distal5.124976.34565HepG2IGF2BP3
chr53212618932126261-3'-UTR,intron-Distal3.161425.56098K562IGF2BP1
chr53214387832143981-3'-UTR,CDS,intron-Distal3.288594.24058K562GRWD1
chr53212490432124955-3'-UTR,intron-Distal3.245077.63447HepG2FUBP3
chr53212606132126098-3'-UTR,intron-Distal4.5987115.51276K562IGF2BP1
chr53212553632125585-3'-UTR,intron-Distal3.2693714.28355K562FAM120A
chr53212619232126231-3'-UTR,intron-Distal4.0461417.28617K562PUM2
chr53212558232125633-3'-UTR,intron-Distal4.2534716.14319K562TIA1
chr53212565832125735-3'-UTR,intron-Distal3.4335421.64917K562PUM2
chr53212554132125582-3'-UTR,intron-Distal4.5367710.91452K562TIA1
chr53212613632126170-3'-UTR,intron-Distal3.039689.03931K562PUM2
chr53212611332126160-3'-UTR,intron-Distal4.234804.29122K562IGF2BP2
chr53217432332174353-5'-UTR,intron-Distal3.7382310.85594K562RBM15
chr53217385932173921-5'-UTR,CDS,intron-Distal5.259608.56980HepG2AQR
chr53217412532174203-5'-UTR,CDS,intron-Distal4.2898822.93371HepG2DDX3X
chr53217384632173898-5'-UTR,CDS,intron-Distal3.311746.27819HepG2PPIG
chr53217413832174243-5'-UTR,CDS,intron-Distal3.058637.36020HepG2RPS3
chr53217413332174232-5'-UTR,CDS,intron-Distal3.643757.46708K562RBM15
chr53217429432174399-5'-UTR,intron-Distal3.299907.39484K562DDX3X
chr53217420332174228-5'-UTR,intron-Distal3.669913.16711HepG2DDX3X
chr53217429832174412-5'-UTR,intron-Distal,intron-Proximal3.268157.53324HepG2DDX3X
chr53217435332174378-5'-UTR,intron-Distal3.924139.54304K562RBM15
chr53217385032173932-5'-UTR,CDS,intron-Distal3.506529.33103K562RBM15
chr53217424132174302-5'-UTR,intron-Distal4.1892113.68491K562RBM15
chr53212637132126418-CDS,intron-Distal,intron-Proximal5.5957227.51716K562LIN28B
chr53217391532173981-CDS,intron-Distal3.043995.44739HepG2GRWD1
chr53217390732174004-CDS,intron-Distal3.397256.01220K562SRSF1
chr53212637532126443-CDS,intron-Distal,intron-Proximal5.578218.76192HepG2LIN28B
chr53217386432173979-CDS,intron-Distal3.952808.11000HepG2SRSF1
chr53212639132126428-CDS,intron-Distal,intron-Proximal3.756695.83487K562RBM15
chr53212641832126445-CDS,intron-Distal,intron-Proximal5.4748624.56005K562LIN28B
chr53217377632173830-intron-Distal3.153923.50005K562RBM15
chr53217355532173622-intron-Distal3.864214.28038HepG2HNRNPC
chr53216579832165909-intron-Distal3.553005.15138K562ILF3
chr53215863732158705-intron-Distal3.209683.87725K562EIF4G2
chr53215538532155465-intron-Distal4.766354.95918HepG2ILF3
chr53215416832154237-intron-Distal3.388613.89652HepG2SFPQ
chr53216760132167681-intron-Distal5.5260413.43295K562QKI
chr53216475332164887-intron-Distal3.497668.32978K562ILF3
chr53214362032143718-intron-Distal5.1481617.78315K562CSTF2T
chr53214634532146400-intron-Distal3.224155.56519HepG2HNRNPC
chr53216759732167645-intron-Distal4.306235.09669HepG2QKI
chr53214377632143801-intron-Distal,intron-Proximal4.214777.26586K562KHSRP
chr53217371032173752-intron-Distal4.099589.54304K562RBM15
chr53215600332156071-intron-Distal3.605403.16362K562HNRNPC
chr53216829932168384-intron-Distal3.707336.47506HepG2SFPQ
chr53215325832153409-intron-Distal4.782416.34129HepG2HNRNPL
chr53214373532143776-intron-Distal,intron-Proximal4.473064.96658K562KHSRP
chr53214378632143841-intron-Distal,intron-Proximal5.618608.03507K562AQR
chr53216001332160092-intron-Distal3.200883.82074K562KHDRBS1
chr53216526532165318-intron-Distal3.674695.47956HepG2ILF3
chr53215388732154005-intron-Distal3.955193.07980HepG2HNRNPM
chr53213840432138468-intron-Distal4.238064.84037HepG2CSTF2
chr53216050832160594-intron-Distal3.052685.42536K562KHSRP
chr53217377532173852-intron-Distal3.623707.72129HepG2EFTUD2
chr53213456432134620-intron-Distal4.584216.79651HepG2HNRNPC
chr53214400032144046-intron-Distal,intron-Proximal4.758455.13952K562SF3B4
chr53214924332149312-intron-Distal3.296764.50771K562PTBP1
chr53216328232163412-intron-Distal3.8621012.28477HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GOLPH3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GOLPH3 is not available on ENCORE database.

  • 75 RBPs can affect the levels of GOLPH3.  








The Knockdown/knockout RNA-Seq assay for GOLPH3 is not available on ENCORE database.





75 RBPs can affect the gene expression of GOLPH3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GOLPH3ENSG00000113384.91873.340302431.65160-0.376307.289606.39940HepG2ACO1
GOLPH3ENSG00000113384.92922.395203704.27610-0.342002.281001.79300HepG2AKAP1
GOLPH3ENSG00000113384.92012.893602443.07610-0.279403.805502.91870HepG2AKAP8L
GOLPH3ENSG00000113384.92915.758103586.68210-0.298804.616603.76940HepG2AUH
GOLPH3ENSG00000113384.91557.891002166.63530-0.475903.374002.34090HepG2BCCIP
GOLPH3ENSG00000113384.91637.650802256.72440-0.462605.037804.26120HepG2BOP1
GOLPH3ENSG00000113384.92415.203303408.29760-0.496903.762302.61220HepG2CCAR1
GOLPH3ENSG00000113384.92022.952302431.12300-0.265204.329303.53230HepG2CKAP4
GOLPH3ENSG00000113384.91904.855802248.92930-0.239603.403502.49060HepG2DDX19B
GOLPH3ENSG00000113384.91566.953502054.44690-0.390803.934603.14000HepG2DDX21
GOLPH3ENSG00000113384.91378.738102130.20130-0.627605.665904.60650HepG2DDX55
GOLPH3ENSG00000113384.91872.702502326.43160-0.313004.497703.67100HepG2DKC1
GOLPH3ENSG00000113384.91744.732502289.25840-0.391905.888104.89530HepG2DNAJC21
GOLPH3ENSG00000113384.91926.475102269.02330-0.236103.486602.76890HepG2DNAJC2
GOLPH3ENSG00000113384.91387.950901872.26050-0.431803.790102.48440HepG2EFTUD2
GOLPH3ENSG00000113384.92184.803802930.22750-0.423503.770403.08510HepG2EIF2S1
GOLPH3ENSG00000113384.92479.859103238.18860-0.384902.750002.11270HepG2EIF4A3
GOLPH3ENSG00000113384.91240.052401629.35730-0.393904.449202.93540HepG2FAM120A
GOLPH3ENSG00000113384.92167.429602813.06030-0.376202.518101.78020HepG2FIP1L1
GOLPH3ENSG00000113384.91923.512603030.87350-0.656007.418806.35370HepG2G3BP1
GOLPH3ENSG00000113384.91928.703002311.18990-0.261002.160801.58380HepG2HNRNPA1
GOLPH3ENSG00000113384.91803.959402570.76480-0.511006.412305.39240HepG2HNRNPC
GOLPH3ENSG00000113384.92082.159503069.24670-0.559807.111306.02850HepG2HNRNPK
GOLPH3ENSG00000113384.92474.810303317.47790-0.4228012.0343010.71920HepG2HNRNPL
GOLPH3ENSG00000113384.91682.191902553.76890-0.6023015.8541014.49930HepG2HNRNPU
GOLPH3ENSG00000113384.92443.176303080.78430-0.334502.572601.91930HepG2IGF2BP2
GOLPH3ENSG00000113384.91907.752502608.59160-0.4514011.6989010.30960HepG2ILF2
GOLPH3ENSG00000113384.92022.051503286.77660-0.700908.072907.04190HepG2MATR3
GOLPH3ENSG00000113384.92501.952903364.17570-0.427203.624702.90390HepG2NCBP2
GOLPH3ENSG00000113384.92767.599003611.15790-0.383805.956704.84010HepG2NOL12
GOLPH3ENSG00000113384.91512.229502995.91260-0.9863016.3777014.67500HepG2PABPC4
GOLPH3ENSG00000113384.92022.682702527.80240-0.321604.899303.81170HepG2PARN
GOLPH3ENSG00000113384.91540.309902277.75900-0.5644011.006509.58830HepG2PPIL4
GOLPH3ENSG00000113384.91094.468301643.55810-0.586605.468004.37290HepG2PRPF8
GOLPH3ENSG00000113384.92611.579303017.64560-0.208502.521901.99550HepG2PTBP1
GOLPH3ENSG00000113384.92522.928203447.07430-0.450306.041705.20530HepG2PUF60
GOLPH3ENSG00000113384.93322.461703659.11390-0.139202.146301.61070HepG2PUM1
GOLPH3ENSG00000113384.93057.029803656.50810-0.258302.903402.21760HepG2PUM2
GOLPH3ENSG00000113384.92318.441403268.37650-0.495409.102808.06910HepG2QKI
GOLPH3ENSG00000113384.92352.012203441.81470-0.5493011.7873010.87170HepG2RBM22
GOLPH3ENSG00000113384.92567.163303358.42460-0.387607.670006.84980HepG2NELFE
GOLPH3ENSG00000113384.92794.542603127.78040-0.162501.845801.32800HepG2RECQL
GOLPH3ENSG00000113384.91305.723401773.95380-0.442105.017304.21760HepG2RPS19
GOLPH3ENSG00000113384.91600.066602274.24810-0.5073012.3220011.10970HepG2SAFB2
GOLPH3ENSG00000113384.91331.342201780.47400-0.419403.436802.38500HepG2SERBP1
GOLPH3ENSG00000113384.92592.227303141.92000-0.277504.307203.59330HepG2SF3B4
GOLPH3ENSG00000113384.92854.705003304.98570-0.211303.564002.78500HepG2SLBP
GOLPH3ENSG00000113384.92012.151102652.16420-0.3984010.030808.92760HepG2SMN1
GOLPH3ENSG00000113384.93444.374203887.44050-0.174602.169701.70880HepG2SRFBP1
GOLPH3ENSG00000113384.92641.983903279.41830-0.311805.868605.24420HepG2SRSF1
GOLPH3ENSG00000113384.92632.288003403.35470-0.370607.469106.50810HepG2SRSF5
GOLPH3ENSG00000113384.92290.143002667.92480-0.220302.366901.84870HepG2SRSF9
GOLPH3ENSG00000113384.92682.754203375.28420-0.331306.125605.41810HepG2SSB
GOLPH3ENSG00000113384.92859.373303870.66240-0.4369012.7267011.55660HepG2SUCLG1
GOLPH3ENSG00000113384.91617.868502120.66380-0.390402.499701.85290HepG2SUPV3L1
GOLPH3ENSG00000113384.92205.778702947.48620-0.418207.248206.41530HepG2TAF15
GOLPH3ENSG00000113384.91154.291302481.48870-1.1042033.0047031.62290HepG2TIAL1
GOLPH3ENSG00000113384.91680.410202503.64450-0.5752014.4826013.33510HepG2TRIM56
GOLPH3ENSG00000113384.92597.302903564.29800-0.456604.307703.25020HepG2UBE2L3
GOLPH3ENSG00000113384.92200.377002529.92650-0.201302.407701.74890HepG2UPF1
GOLPH3ENSG00000113384.91353.758401942.09260-0.520603.129702.05960HepG2UPF2
GOLPH3ENSG00000113384.91548.206102087.55850-0.431203.332102.54150HepG2XRN2
GOLPH3ENSG00000113384.92061.722502782.43340-0.4325011.5991010.66930HepG2ZNF622
GOLPH3ENSG00000113384.93304.630702663.230500.311202.673502.09410K562AQR
GOLPH3ENSG00000113384.93246.319302635.975600.300404.664903.84880K562DDX47
GOLPH3ENSG00000113384.93086.152002663.183300.212602.266801.48510K562DKC1
GOLPH3ENSG00000113384.91125.826201447.64330-0.362702.575201.69770K562EFTUD2
GOLPH3ENSG00000113384.92148.033102771.13910-0.367503.897903.00480K562GRSF1
GOLPH3ENSG00000113384.91219.402501471.21010-0.270802.002701.48340K562HNRNPC
GOLPH3ENSG00000113384.91059.703901313.71250-0.310002.352201.31390K562HNRNPF
GOLPH3ENSG00000113384.93014.102502511.687200.263002.005801.32350K562HSPD1
GOLPH3ENSG00000113384.9930.705801578.03990-0.761705.899204.59360K562METAP2
GOLPH3ENSG00000113384.91388.420201853.87020-0.417103.352602.43770K562PCBP3
GOLPH3ENSG00000113384.91119.062201421.96140-0.345603.340702.45580K562POLR2G
GOLPH3ENSG00000113384.9986.913801319.07170-0.418503.588602.53960K562PSIP1
GOLPH3ENSG00000113384.94527.464903769.566000.264202.968501.85870K562PUM1
GOLPH3ENSG00000113384.92838.649802391.421900.247201.820301.32150K562RBM15
GOLPH3ENSG00000113384.91690.131101426.292300.244802.071301.36060K562SYNCRIP
GOLPH3ENSG00000113384.9931.059801268.73940-0.446503.395002.35340K562TIAL1
GOLPH3ENSG00000113384.91080.705001347.75190-0.318602.342601.48330K562TRIM56
GOLPH3ENSG00000113384.92488.719702135.548100.220702.668501.96270K562UPF1
GOLPH3ENSG00000113384.92237.668301900.177700.235803.168302.26740K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GOLPH3 is not available on ENCORE database.





2 RBPs can affect the splicing of GOLPH3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGOLPH3ENSG00000113384.9chr5-3217072232170874321439373214398632173915321744560.086000.000000.00000includedK562AQR
SEGOLPH3ENSG00000113384.9chr5-3217072232170874321438543214398632173915321744560.149000.000000.00016includedK562HNRNPC
A3SSGOLPH3ENSG00000113384.9chr5-3214385432144021321438543214398632173915321744560.069000.000000.00001longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GOLPH3 is not avaliable on ENCORE database.