GCAT

General Information

Gene Name       : GCAT
Gene ID             : ENSG00000100116.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GCAT)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GCATENSG00000100116.161.094.892.99ENCSR000AEF
HepG2GCATENSG00000100116.1626.7610.4118.59ENCSR985KAT
K562GCATENSG00000100116.1636.6621.3629.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GCAT is not avaliable on ENCORE database.



Proteins bound to RNA
  • GCAT RNA is bound by 14 proteins.  







eCLIP assay for GCAT is not avaliable on ENCORE database.





14 proteins are bound to GCAT RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223820893338208988+3'-UTR,CDS4.179589.65448K562YBX3
chr223820946938209509+3'-UTR,CDS,intron-Proximal3.381336.74819K562YBX3
chr223820943938209483+3'-UTR,CDS,intron-Proximal4.3806010.52556K562AQR
chr223820956938209615+3'-UTR,CDS3.884415.52342HepG2PPIG
chr223820898838208995+3'-UTR,CDS3.718816.36657K562YBX3
chr223820897038209038+3'-UTR,CDS,intron-Proximal3.9171610.95071HepG2PRPF8
chr223820953538209557+3'-UTR,CDS3.361814.53005K562YBX3
chr223820395538204034+5'-UTR,CDS3.339026.72797HepG2DDX3X
chr223820396238204045+5'-UTR,CDS5.346204.54356K562DDX3X
chr223821131938211442+CDS,intron-Proximal4.034173.53160K562RBFOX2
chr223820939738209442+CDS,intron-Proximal3.472873.12708HepG2RBM5
chr223821140338211438+CDS,intron-Proximal3.784594.52312K562AQR
chr223820613038206156+CDS,intron-Distal3.740606.16886K562YBX3
chr223821255038212598+CDS,intron-Proximal4.540078.52787K562AQR
chr223821137138211472+CDS,intron-Proximal4.515525.23082K562DDX24
chr223821137438211458+CDS,intron-Proximal4.0069612.98847K562SF3B4
chr223820609338206130+CDS,intron-Distal5.1420320.02160K562YBX3
chr223820608638206093+CDS,intron-Distal3.6982111.81469K562YBX3
chr223821180938211845+CDS,intron-Proximal4.297643.49905HepG2PPIG
chr223820903238209135+intron-Distal,intron-Proximal5.554024.83371K562EFTUD2
chr223821194938212063+intron-Distal4.598864.97123HepG2PCBP2
chr223820903938209120+intron-Distal,intron-Proximal4.110718.32276HepG2EFTUD2
chr223820433638204443+intron-Distal3.720346.49417HepG2RBM15
chr223820904338209107+intron-Distal,intron-Proximal5.3235921.10388K562AQR
chr223820439138204440+intron-Distal4.319184.82934K562RBM15
chr223821132938211421+intron-Proximal4.220583.71613K562UCHL5
chr223820899538209043+intron-Proximal5.5442817.39019K562AQR
chr223821232838212376+intron-Proximal4.501078.01338K562AQR
chr223820901638209095+intron-Proximal4.506213.70678K562BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GCAT is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GCAT is not available on ENCORE database.

  • 105 RBPs can affect the levels of GCAT.  








The Knockdown/knockout RNA-Seq assay for GCAT is not available on ENCORE database.





105 RBPs can affect the gene expression of GCAT :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GCATENSG00000100116.12355.78490507.48890-0.512402.246801.68790HepG2ACO1
GCATENSG00000100116.12755.24020511.882500.561002.196701.71650HepG2AKAP1
GCATENSG00000100116.12199.86740509.73640-1.350708.491407.23900HepG2AKAP8L
GCATENSG00000100116.12322.17650575.77880-0.8377010.958409.74340HepG2AUH
GCATENSG00000100116.12194.02050323.96810-0.739605.388703.70090HepG2BUD13
GCATENSG00000100116.12172.93650507.21410-1.5524010.291209.17650HepG2CKAP4
GCATENSG00000100116.12499.75160313.189200.674106.710205.79230HepG2CELF1
GCATENSG00000100116.12258.31370135.121800.934806.116804.23760HepG2DDX47
GCATENSG00000100116.12419.90620222.135600.918504.181103.25200HepG2DDX55
GCATENSG00000100116.12447.12970318.367500.489902.290301.37140HepG2DDX5
GCATENSG00000100116.12234.22430153.689600.607802.955701.94800HepG2DHX30
GCATENSG00000100116.12421.14200159.341401.4021016.2490014.68140HepG2DNAJC21
GCATENSG00000100116.12254.25720157.955400.686704.792803.97280HepG2DNAJC2
GCATENSG00000100116.12588.31210404.820900.539202.299001.75450HepG2EIF2S1
GCATENSG00000100116.12142.40110220.93680-0.633702.591001.71320HepG2EIF3D
GCATENSG00000100116.12228.48050332.23160-0.540103.347402.44240HepG2EIF4G1
GCATENSG00000100116.12590.36270318.258900.891308.983307.55250HepG2EIF4G2
GCATENSG00000100116.12193.26050374.60450-0.954807.968106.25150HepG2ESF1
GCATENSG00000100116.12237.17740661.09570-1.4789031.4675029.82870HepG2ETF1
GCATENSG00000100116.12232.36780495.76130-1.093205.282904.13000HepG2EWSR1
GCATENSG00000100116.12138.83530436.72450-1.6533015.4383013.86530HepG2FIP1L1
GCATENSG00000100116.12245.82740418.76000-0.768502.087101.50570HepG2G3BP1
GCATENSG00000100116.12108.34570196.70700-0.860403.919802.83990HepG2GEMIN5
GCATENSG00000100116.12229.10370145.768700.652202.627902.00120HepG2GPKOW
GCATENSG00000100116.12252.77800160.868200.651903.238202.54630HepG2HNRNPA1
GCATENSG00000100116.12105.88610178.94310-0.757002.935502.22330HepG2HNRNPC
GCATENSG00000100116.12619.53850306.776401.0139017.8698016.29110HepG2HNRNPL
GCATENSG00000100116.12246.82680139.110800.827204.193903.43450HepG2HNRNPLL
GCATENSG00000100116.12346.60100260.509200.411802.386201.71190HepG2IGF2BP1
GCATENSG00000100116.12184.05920399.69360-1.118702.856901.85930HepG2IGF2BP3
GCATENSG00000100116.12238.30780181.574300.392202.059201.41590HepG2ILF2
GCATENSG00000100116.12237.09110353.35140-0.575703.587702.66820HepG2MSI2
GCATENSG00000100116.12279.60250464.91880-0.733601.861301.33510HepG2NCBP2
GCATENSG00000100116.12455.8266078.265602.5419010.973609.18130HepG2PABPC1
GCATENSG00000100116.12541.40200418.508400.371302.784202.17590HepG2PCBP1
GCATENSG00000100116.12305.50920158.546100.946208.364407.13070HepG2PPIL4
GCATENSG00000100116.12163.26390279.86400-0.777503.518402.65600HepG2PRPF4
GCATENSG00000100116.12418.15480338.384200.305301.869201.36110HepG2PUM1
GCATENSG00000100116.12346.01370461.19660-0.414602.530401.92870HepG2QKI
GCATENSG00000100116.12241.73550552.54860-1.1927016.6502015.59680HepG2RBM22
GCATENSG00000100116.12221.94350418.57110-0.915308.316307.19580HepG2RBM25
GCATENSG00000100116.12163.6954082.702600.984903.321601.64510HepG2RBM47
GCATENSG00000100116.12298.47150190.087400.650802.839901.76500HepG2RCC2
GCATENSG00000100116.12234.01910473.92980-1.0180011.8906010.91880HepG2NELFE
GCATENSG00000100116.12306.37380441.41160-0.526803.961703.24090HepG2RECQL
GCATENSG00000100116.12122.19600284.94880-1.221509.147808.02080HepG2RPLP0
GCATENSG00000100116.1260.96050215.01080-1.8185015.1461013.86720HepG2RPS19
GCATENSG00000100116.12146.00870215.86890-0.564102.506901.74320HepG2RPS2
GCATENSG00000100116.1257.50390169.30960-1.557904.347203.38580HepG2RRP9
GCATENSG00000100116.12322.61180158.298601.0271010.357609.23340HepG2SAFB2
GCATENSG00000100116.12136.41350455.75710-1.7403017.5859015.81250HepG2SF3A3
GCATENSG00000100116.12552.23080305.641400.8533011.9365010.65400HepG2SLBP
GCATENSG00000100116.12353.16030168.740401.065404.428402.37200HepG2SND1
GCATENSG00000100116.12217.01660624.07420-1.5239030.8260029.62370HepG2SRFBP1
GCATENSG00000100116.12284.71130462.77430-0.700806.341805.69740HepG2SRSF1
GCATENSG00000100116.1284.20720148.16950-0.815202.623001.65160HepG2SRSF3
GCATENSG00000100116.12218.10620314.73370-0.529103.330702.65520HepG2SRSF5
GCATENSG00000100116.12674.87440541.828300.316702.472101.98120HepG2SSB
GCATENSG00000100116.12112.13660192.56140-0.780103.647102.19120HepG2SSRP1
GCATENSG00000100116.12253.93510415.97360-0.712002.139001.63420HepG2TAF15
GCATENSG00000100116.12345.27130174.272300.9863010.584409.58800HepG2TRIM56
GCATENSG00000100116.12188.66810373.52970-0.985407.378706.35960HepG2U2AF1
GCATENSG00000100116.12219.34990404.18840-0.881809.527008.36590HepG2UPF1
GCATENSG00000100116.12154.92300276.17520-0.834006.379505.42860HepG2ZC3H8
GCATENSG00000100116.12259.43260444.52780-0.776906.530905.78410HepG2ZNF622
GCATENSG00000100116.12378.66850519.09560-0.455102.798701.61110K562AARS
GCATENSG00000100116.121495.244301764.29800-0.238702.504001.95920K562AGGF1
GCATENSG00000100116.12423.689601173.21760-1.4694026.5627024.94290K562AQR
GCATENSG00000100116.12108.11400187.22770-0.792203.307002.35180K562BOP1
GCATENSG00000100116.12278.52170420.87450-0.595603.990902.67720K562CCAR1
GCATENSG00000100116.121137.395601751.24400-0.6226010.725908.87790K562CELF1
GCATENSG00000100116.121479.743502070.00430-0.484305.055503.04550K562DDX19B
GCATENSG00000100116.12647.25490856.18330-0.403603.401202.68940K562DDX47
GCATENSG00000100116.12919.81270684.975400.425204.382402.62000K562DDX6
GCATENSG00000100116.12318.59310452.58340-0.506503.078101.66220K562DNAJC21
GCATENSG00000100116.12287.63500479.73820-0.738003.467001.48490K562DNAJC2
GCATENSG00000100116.12949.93580779.474500.285202.375801.70080K562EIF2S2
GCATENSG00000100116.12278.42180428.10300-0.620702.704201.71480K562EIF3A
GCATENSG00000100116.12503.47690705.83340-0.487402.704601.89310K562EIF4A3
GCATENSG00000100116.12796.53270635.618700.325502.636001.51980K562EIF4B
GCATENSG00000100116.121190.726001423.97420-0.258102.741601.80740K562EIF4G2
GCATENSG00000100116.12216.69900493.30360-1.1868012.121509.56510K562FKBP4
GCATENSG00000100116.1292.29800202.55700-1.134006.536305.20090K562FMR1
GCATENSG00000100116.12565.64640734.03290-0.375903.261402.61340K562FXR1
GCATENSG00000100116.1237.11380156.79490-2.0789012.3291010.61280K562G3BP2
GCATENSG00000100116.12185.57140567.72810-1.6132024.7200023.01230K562HNRNPC
GCATENSG00000100116.12294.30500507.09940-0.785007.132105.22390K562HNRNPF
GCATENSG00000100116.12743.154801156.36410-0.637907.264305.81700K562HNRNPU
GCATENSG00000100116.12892.00390565.212500.658202.326901.59240K562HSPD1
GCATENSG00000100116.12157.57510366.93380-1.219507.076404.79400K562ILF2
GCATENSG00000100116.12273.49760424.94570-0.635804.369502.50560K562KHDRBS1
GCATENSG00000100116.1277.00860162.29620-1.075504.000202.86020K562KRR1
GCATENSG00000100116.12789.61500436.982200.853507.586005.95890K562MATR3
GCATENSG00000100116.121766.180702182.56790-0.305402.965702.01500K562MBNL1
GCATENSG00000100116.121238.959301517.75610-0.292802.454701.39220K562MSI2
GCATENSG00000100116.12645.83860841.64450-0.382003.888602.94410K562MTPAP
GCATENSG00000100116.121181.261301529.82120-0.373002.072701.33160K562NAA15
GCATENSG00000100116.12525.29050704.84920-0.424203.044901.75620K562NCBP2
GCATENSG00000100116.121065.449801557.72540-0.548006.382104.08510K562NOL12
GCATENSG00000100116.12751.98000935.09140-0.314403.431802.61000K562NSUN2
GCATENSG00000100116.12205.45410389.57350-0.923102.633801.68010K562PCBP2
GCATENSG00000100116.12865.671601553.61590-0.8437014.0726012.21760K562PUF60
GCATENSG00000100116.121168.390501652.85040-0.500406.539904.83540K562PUM1
GCATENSG00000100116.12975.296301619.12310-0.7313015.6275013.39550K562PUM2
GCATENSG00000100116.121378.655301820.65820-0.401203.115202.54500K562PUS1
GCATENSG00000100116.12470.20730922.77280-0.9727018.9961017.01400K562SF3A3
GCATENSG00000100116.1267.65630180.76420-1.417807.446505.80470K562SF3B1
GCATENSG00000100116.12303.92450463.55550-0.609004.315402.70710K562SLBP
GCATENSG00000100116.12658.49600945.40750-0.521807.502906.03990K562SRPK2
GCATENSG00000100116.12484.41530314.486700.623102.312201.36460K562SRSF4
GCATENSG00000100116.12674.21310394.160600.774304.709203.27340K562SRSF5
GCATENSG00000100116.12812.54650407.221800.996507.584706.12600K562TIA1
GCATENSG00000100116.12366.90870489.61190-0.416202.180901.36020K562TIAL1
GCATENSG00000100116.12737.21410399.883600.882404.474903.02420K562TRA2A
GCATENSG00000100116.1262.82630151.95050-1.274205.582703.91720K562U2AF1
GCATENSG00000100116.1261.93140156.94310-1.341507.899806.53080K562U2AF2
GCATENSG00000100116.121245.978901751.94810-0.491703.650402.02150K562UBE2L3
GCATENSG00000100116.12579.85350991.50130-0.7739014.7484013.24380K562UPF1
GCATENSG00000100116.12306.96440636.29770-1.0516010.605208.44990K562UTP3
GCATENSG00000100116.12620.77270882.27240-0.507207.000505.71190K562WDR43
GCATENSG00000100116.121004.413101321.61560-0.395903.504802.51290K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GCAT is not available on ENCORE database.





8 RBPs can affect the splicing of GCAT :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGCATENSG00000100116.12chr22+382059553820616438203922382041703820889338208995-0.149000.007380.09932excludedK562SF3B4
SEGCATENSG00000100116.12chr22+382060333820616438203918382041703820889338208995-0.273000.000000.00000excludedHepG2U2AF1
SEGCATENSG00000100116.12chr22+382060333820616438204020382041703820889338208995-0.175000.000960.06989excludedK562SUPV3L1
SEGCATENSG00000100116.12chr22+382060333820616438203918382041703820889338208995-0.156000.001230.07766excludedHepG2TIAL1
SEGCATENSG00000100116.12chr22+382060333820616438204020382041703820889338208995-0.143000.002260.08464excludedHepG2SF3B4
SEGCATENSG00000100116.12chr22+382059553820616438203922382041703820889338209017-0.162000.002450.07432excludedK562TARDBP
SEGCATENSG00000100116.12chr22+382060333820616438203918382041703820889338208995-0.121000.000040.00287excludedK562HNRNPU
SEGCATENSG00000100116.12chr22+382060333820616438204020382041703820889338208995-0.231000.000070.00554excludedHepG2HNRNPU
SEGCATENSG00000100116.12chr22+382060333820616438204020382041703820889338208995-0.209000.000000.00001excludedK562HNRNPC
A3SSGCATENSG00000100116.12chr22+3820928338209616382094693820961638208893382089950.107000.002290.07340longerK562U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GCAT is not avaliable on ENCORE database.