GAR1

General Information

Gene Name       : GAR1
Gene ID             : ENSG00000109534.16
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: GAR1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GAR1ENSG00000109534.1637.9037.5737.73ENCSR000AEF
HepG2GAR1ENSG00000109534.1612.5730.2921.43ENCSR985KAT
K562GAR1ENSG00000109534.16108.89114.91111.90ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GAR1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GAR1 RNA is bound by 18 proteins.  







eCLIP assay for GAR1 is not avaliable on ENCORE database.





18 proteins are bound to GAR1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4110745805110745848+3'-UTR5.89006400.00000K562PUM2
chr4110745750110745811+3'-UTR6.9486959.84553HepG2SUB1
chr4110745605110745667+3'-UTR3.203115.00242K562PABPC4
chr4110745573110745639+3'-UTR,CDS,intron-Proximal3.692494.23394K562TBRG4
chr4110745618110745649+3'-UTR4.445374.12025K562YBX3
chr4110745572110745623+3'-UTR,CDS,intron-Proximal4.273534.80637K562ZC3H11A
chr4110745811110745833+3'-UTR7.1591244.44450HepG2SUB1
chr4110745579110745605+3'-UTR,CDS3.160303.36032K562PABPC4
chr4110745788110745846+3'-UTR3.147284.76789K562PABPC4
chr4110745749110745790+3'-UTR4.701486.10236K562NOLC1
chr4110745790110745834+3'-UTR4.3915410.05254K562NOLC1
chr4110745570110745598+3'-UTR,CDS,intron-Proximal3.591274.98099K562LARP4
chr4110745581110745644+3'-UTR,CDS4.2164712.13609K562DDX6
chr4110745605110745618+3'-UTR4.206103.46958K562YBX3
chr4110745585110745607+3'-UTR3.631543.04470K562FUS
chr4110745777110745805+3'-UTR5.80331400.00000K562PUM2
chr4110736683110736731+5'-UTR,intron-Proximal3.622256.20524K562DDX3X
chr4110737306110737397+5'-UTR,CDS,intron-Proximal3.8994916.10748K562DDX3X
chr4110736923110736963+5'-UTR,intron-Distal,intron-Proximal3.848638.56326K562DDX3X
chr4110740208110740303+CDS,intron-Proximal4.856864.58968K562PRPF8
chr4110745573110745581+CDS,intron-Proximal4.5695510.40043K562DDX6
chr4110740214110740273+CDS,intron-Proximal3.496606.16312K562AQR
chr4110745125110745170+CDS3.062395.83192K562GTF2F1
chr4110737339110737485+CDS4.3785322.38440K562RPS3
chr4110745169110745190+CDS,intron-Proximal4.436544.15549K562TBRG4
chr4110745120110745207+CDS,intron-Proximal4.229053.93614HepG2AQR
chr4110745170110745190+CDS,intron-Proximal3.921326.03664K562GTF2F1
chr4110745137110745190+CDS,intron-Proximal4.6349021.40643K562DDX6
chr4110745131110745189+CDS3.229666.95218K562UCHL5
chr4110739629110739706+intron-Distal4.510164.52538HepG2PTBP1
chr4110739627110739703+intron-Distal5.410905.39854K562PTBP1
chr4110739736110739778+intron-Distal3.432398.20361K562PTBP1
chr4110739900110739940+intron-Distal3.346173.69083K562PTBP1
chr4110743644110743695+intron-Proximal4.530167.53589K562AQR
chr4110740245110740290+intron-Proximal4.232095.42080K562EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GAR1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GAR1 is not available on ENCORE database.

  • 97 RBPs can affect the levels of GAR1.  








The Knockdown/knockout RNA-Seq assay for GAR1 is not available on ENCORE database.





97 RBPs can affect the gene expression of GAR1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GAR1ENSG00000109534.12214.78100297.15000-0.468302.543901.95680HepG2ACO1
GAR1ENSG00000109534.12390.98120544.46460-0.477704.197703.38500HepG2AUH
GAR1ENSG00000109534.12164.30930353.33510-1.104604.075702.94090HepG2BCCIP
GAR1ENSG00000109534.12245.83790421.93190-0.779302.830401.84240HepG2CCAR1
GAR1ENSG00000109534.12187.47890297.16410-0.664503.972103.20240HepG2CKAP4
GAR1ENSG00000109534.12360.34850461.65810-0.357402.590001.86830HepG2DAZAP1
GAR1ENSG00000109534.12117.04590432.12390-1.8844022.7372021.12310HepG2DDX3X
GAR1ENSG00000109534.12151.96920231.33130-0.606202.906901.51590HepG2DDX52
GAR1ENSG00000109534.12163.48950282.50060-0.789105.647104.67350HepG2DNAJC21
GAR1ENSG00000109534.12185.64380280.03070-0.593004.058803.29980HepG2DNAJC2
GAR1ENSG00000109534.12189.67980356.84670-0.911706.159705.29460HepG2EIF2S1
GAR1ENSG00000109534.12210.97470394.35640-0.902406.226505.27320HepG2EIF4A3
GAR1ENSG00000109534.12330.69650436.29060-0.399802.091101.37580HepG2EIF4G2
GAR1ENSG00000109534.12264.21990369.10190-0.482302.304801.69470HepG2G3BP1
GAR1ENSG00000109534.12136.62150405.05010-1.567908.425107.35160HepG2GPKOW
GAR1ENSG00000109534.12121.94540285.20740-1.225809.055907.98500HepG2HNRNPA1
GAR1ENSG00000109534.12148.88210317.24860-1.091408.057806.92090HepG2HNRNPC
GAR1ENSG00000109534.12332.57920420.53750-0.338502.197101.58660HepG2HNRNPL
GAR1ENSG00000109534.1298.32790386.54240-1.9750011.032809.87840HepG2HNRNPLL
GAR1ENSG00000109534.1287.36440315.15060-1.8509025.0880023.41240HepG2HNRNPU
GAR1ENSG00000109534.12244.73540391.46760-0.677703.070702.30990HepG2IGF2BP1
GAR1ENSG00000109534.12216.89730375.18330-0.790605.113804.22110HepG2IGF2BP2
GAR1ENSG00000109534.12181.94050321.91450-0.823207.970406.79420HepG2ILF2
GAR1ENSG00000109534.12169.85730306.10960-0.849705.704603.97460HepG2LIN28B
GAR1ENSG00000109534.12561.57040400.258700.488402.617902.00320HepG2MATR3
GAR1ENSG00000109534.12247.03070394.11730-0.673902.702701.74700HepG2MTPAP
GAR1ENSG00000109534.12187.16070409.68650-1.130209.322008.19880HepG2NCBP2
GAR1ENSG00000109534.12347.01750457.77880-0.399602.581301.84550HepG2NOL12
GAR1ENSG00000109534.12195.85630364.85050-0.897506.357105.27370HepG2PABPC4
GAR1ENSG00000109534.12507.80590336.509600.593503.663902.98640HepG2PCBP1
GAR1ENSG00000109534.12197.25490281.08770-0.511002.723501.99100HepG2PPIL4
GAR1ENSG00000109534.12303.79870436.98770-0.524503.409002.75660HepG2PUF60
GAR1ENSG00000109534.12680.84880463.879200.553507.006606.15210HepG2PUM1
GAR1ENSG00000109534.12353.83320463.54200-0.389602.329701.71250HepG2PUM2
GAR1ENSG00000109534.12190.58780302.67810-0.667303.221402.56890HepG2PUS1
GAR1ENSG00000109534.12233.15890370.83340-0.669504.731503.94670HepG2QKI
GAR1ENSG00000109534.12352.69490262.070000.428402.409801.60330HepG2RBM15
GAR1ENSG00000109534.12646.01870522.509100.306001.937701.48390HepG2RBM22
GAR1ENSG00000109534.12119.86260260.00640-1.117206.192304.81880HepG2RPS10
GAR1ENSG00000109534.12193.69840280.65070-0.535003.209902.52620HepG2SAFB2
GAR1ENSG00000109534.12243.31570418.99790-0.784108.155307.04780HepG2SLBP
GAR1ENSG00000109534.12248.60150425.73130-0.776103.273502.42080HepG2SNRNP70
GAR1ENSG00000109534.12502.67380372.102400.433803.091302.59870HepG2SRSF1
GAR1ENSG00000109534.12328.26420431.45870-0.394402.622802.00950HepG2SRSF5
GAR1ENSG00000109534.12318.50330512.35410-0.685807.611206.84220HepG2SSB
GAR1ENSG00000109534.12197.33210376.63090-0.932504.469703.57580HepG2TARDBP
GAR1ENSG00000109534.12177.51680306.19690-0.786505.720805.05190HepG2TIAL1
GAR1ENSG00000109534.12206.39320308.96710-0.582103.969003.31710HepG2TRIM56
GAR1ENSG00000109534.12409.46260235.183000.799805.857505.04050HepG2UTP3
GAR1ENSG00000109534.121185.59070941.802900.332001.929701.43940K562AGGF1
GAR1ENSG00000109534.121245.73280979.952900.346101.956301.40430K562AKAP8L
GAR1ENSG00000109534.121071.573101570.51720-0.551509.068706.59650K562BCCIP
GAR1ENSG00000109534.121221.556501517.65650-0.313103.862102.71560K562BCLAF1
GAR1ENSG00000109534.12904.027101460.46180-0.692008.172006.63560K562BOP1
GAR1ENSG00000109534.121296.618901734.71170-0.419903.276301.70070K562BUD13
GAR1ENSG00000109534.121197.805201515.41470-0.339302.708501.44460K562CIRBP
GAR1ENSG00000109534.121028.169601655.94670-0.687603.815302.07750K562CKAP4
GAR1ENSG00000109534.121341.084201907.18650-0.508002.657901.62260K562CNOT7
GAR1ENSG00000109534.121626.417401960.42810-0.269502.894701.75950K562CPEB4
GAR1ENSG00000109534.12826.770701552.84260-0.9094017.6395015.64240K562CPSF6
GAR1ENSG00000109534.12464.34550892.51450-0.9427014.5677012.05580K562DDX3X
GAR1ENSG00000109534.122499.196502028.524100.300904.487103.68440K562DDX47
GAR1ENSG00000109534.121539.410301054.723600.545404.942203.71980K562DKC1
GAR1ENSG00000109534.12756.00640980.32310-0.374904.130202.63230K562EIF2S1
GAR1ENSG00000109534.121028.495801929.69550-0.907806.502005.46780K562EIF2S2
GAR1ENSG00000109534.121447.955701177.210500.298502.228801.50830K562EIF3G
GAR1ENSG00000109534.12604.73420932.44720-0.624704.556103.50280K562EIF4A3
GAR1ENSG00000109534.12674.07770839.70970-0.317002.645401.52570K562EIF4B
GAR1ENSG00000109534.121022.709601790.21340-0.8077012.6331010.70050K562FIP1L1
GAR1ENSG00000109534.12752.930601580.07210-1.0694018.8158016.51770K562FMR1
GAR1ENSG00000109534.12786.479601339.29340-0.768009.085507.33760K562FTO
GAR1ENSG00000109534.121553.11020969.704200.6794013.3755012.14580K562FXR1
GAR1ENSG00000109534.12877.484601482.54460-0.7566011.147709.53260K562GPKOW
GAR1ENSG00000109534.121872.536502571.85080-0.457802.376501.67420K562GRSF1
GAR1ENSG00000109534.12663.829101185.24010-0.836302.002501.48320K562HNRNPC
GAR1ENSG00000109534.122036.787001412.229100.528205.278003.53290K562HNRNPK
GAR1ENSG00000109534.121144.071301650.96570-0.529108.295006.75760K562HNRNPU
GAR1ENSG00000109534.121817.641002427.16800-0.417204.216603.24060K562HSPD1
GAR1ENSG00000109534.12944.059001413.78800-0.582604.733703.24000K562IGF2BP2
GAR1ENSG00000109534.121121.179901438.07880-0.359103.044601.77980K562IGF2BP3
GAR1ENSG00000109534.12651.259301266.00750-0.959009.856807.97560K562KRR1
GAR1ENSG00000109534.12939.605701447.14500-0.623108.212106.65290K562METAP2
GAR1ENSG00000109534.121093.712701370.24480-0.325203.976303.02120K562MTPAP
GAR1ENSG00000109534.12683.05310931.11840-0.447004.271302.73040K562NCBP2
GAR1ENSG00000109534.121077.606501522.52280-0.4986010.967309.61740K562NSUN2
GAR1ENSG00000109534.12757.651201193.23290-0.655305.649004.45400K562PCBP3
GAR1ENSG00000109534.12705.79390915.28250-0.375002.973302.14230K562POLR2G
GAR1ENSG00000109534.121295.526402032.22710-0.649508.504006.86940K562PPIG
GAR1ENSG00000109534.121494.804701075.685500.474603.907403.01770K562PRPF8
GAR1ENSG00000109534.122254.491403060.78320-0.441104.580703.33640K562PUM2
GAR1ENSG00000109534.121497.52680972.100100.623302.886402.33420K562PUS1
GAR1ENSG00000109534.121273.83230946.953200.427703.411302.76420K562RBM15
GAR1ENSG00000109534.121081.250201384.44910-0.356602.896802.03260K562RBM22
GAR1ENSG00000109534.12935.508301159.42210-0.309603.482301.70820K562RPS10
GAR1ENSG00000109534.121443.602001095.947200.397402.610001.81960K562RPS19
GAR1ENSG00000109534.121025.10230815.437700.330002.471501.45160K562SAFB
GAR1ENSG00000109534.121184.972801502.25560-0.342303.979603.01090K562SF3A3
GAR1ENSG00000109534.121043.524401410.09050-0.434303.177902.13340K562SF3B1
GAR1ENSG00000109534.12730.168001182.27410-0.695302.939601.57780K562SFPQ
GAR1ENSG00000109534.12493.31810736.90340-0.579002.950801.85430K562SRSF4
GAR1ENSG00000109534.121025.057701336.61400-0.382903.185602.04400K562SRSF5
GAR1ENSG00000109534.12922.052801227.20900-0.412502.970501.75530K562SRSF7
GAR1ENSG00000109534.121848.182202348.89320-0.345902.900101.50460K562SSRP1
GAR1ENSG00000109534.121595.589902148.37920-0.429203.750002.26040K562STAU1
GAR1ENSG00000109534.12683.803401041.92580-0.607602.411701.46730K562SUPV3L1
GAR1ENSG00000109534.121491.65410918.007700.7002011.654209.97840K562SYNCRIP
GAR1ENSG00000109534.121058.173101432.43020-0.436903.793502.95890K562TARDBP
GAR1ENSG00000109534.121055.255101381.73050-0.388903.845602.85810K562TIA1
GAR1ENSG00000109534.121378.543002094.25840-0.603307.086404.73600K562TRIP6
GAR1ENSG00000109534.121344.900801615.61470-0.264603.070301.72870K562TROVE2
GAR1ENSG00000109534.122356.822503310.75330-0.490303.805902.14540K562UBE2L3
GAR1ENSG00000109534.12707.976901102.53520-0.639102.755101.73860K562UCHL5
GAR1ENSG00000109534.121122.026101614.35870-0.5249010.231208.96310K562UPF1
GAR1ENSG00000109534.12948.469601381.36320-0.542406.735505.33460K562WDR3
GAR1ENSG00000109534.121948.963702891.05680-0.568904.376003.24940K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GAR1 is not available on ENCORE database.





6 RBPs can affect the splicing of GAR1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGAR1ENSG00000109534.12chr4+1107368331107369601107366651107367011107373081107375250.228000.000220.07119includedK562IGF2BP2
SEGAR1ENSG00000109534.12chr4+1107368331107369601107366651107367011107373081107375250.202000.000180.00509includedK562SRSF1
SEGAR1ENSG00000109534.12chr4+110737308110737534110736665110736701110739091110739246-0.052000.000120.01604excludedK562XRCC6
SEGAR1ENSG00000109534.12chr4+110737308110737411110736665110736701110739091110739246-0.329000.004900.04573excludedK562AQR
SEGAR1ENSG00000109534.12chr4+1107368331107369601107366651107367011107373081107375250.184000.000660.02714includedK562TARDBP
A3SSGAR1ENSG00000109534.12chr4+1107372731107374111107373081107374111107371001107371610.213000.005330.03059longerK562AQR
A5SSGAR1ENSG00000109534.12chr4+1107368331107370451107368331107369601107373081107374110.053000.000000.00000longerK562AQR
MXEGAR1ENSG00000109534.12chr4+1107368331107369601107373081107374111107366651107367011107390911107392460.242000.000520.011691includedK562SRSF1
MXEGAR1ENSG00000109534.12chr4+1107368331107369601107373081107375251107366651107367011107390911107392460.283000.000430.010061includedK562SRSF1
MXEGAR1ENSG00000109534.12chr4+1107368331107369601107373081107374111107366651107367011107390911107392460.211000.004330.079381includedK562TARDBP
MXEGAR1ENSG00000109534.12chr4+1107368331107370451107373081107374111107366651107367011107390911107392460.229000.001590.087951includedK562RBM22
MXEGAR1ENSG00000109534.12chr4+1107368331107369601107373081107374111107366651107367011107390911107392460.229000.001590.087951includedK562RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GAR1 is not avaliable on ENCORE database.