DDX56

General Information

Gene Name : DDX56
Gene ID : ENSG00000136271.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: DDX56)

Not Available

Antibody Validation

Bethyl Labs: A302-979A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	DDX56	ENSG00000136271.10	24.69	53.15	38.92	ENCSR000AEF
HepG2	DDX56	ENSG00000136271.10	68.14	62.33	65.23	ENCSR985KAT
K562	DDX56	ENSG00000136271.10	82.46	89.14	85.80	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
DDX56	ENCAB108KLZ	A302-979A	1				BGHcLV39-11, Submitted, ENCORE2	BGKcLV37-15, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
DDX56	K562	CRISPR			DDX56-BGKcLV37-15,DDX56-BGKcLV37-16	NT-BGKcLV37-1,NT-BGKcLV37-2	64.9,79.9	Submitting	ENCORE2
DDX56	HepG2	CRISPR			DDX56-BGHcLV39-11,DDX56-BGHcLV39-12	NT-BGHcLV39-1,NT-BGHcLV39-2	64.1,71.3	Submitting	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
DDX56	Product_ID: A302-979A Lot_ID: 1 Source: Bethyl Labs Target Name: DDX56-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for DDX56 is not avaliable on ENCORE database.

Proteins bound to RNA

DDX56 RNA is bound by 21 proteins.

eCLIP assay for DDX56 is not avaliable on ENCORE database.

21 proteins are bound to DDX56 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	44607671	44607719	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.66110	10.59198	HepG2	PRPF8
chr7	44607789	44607857	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.96601	6.57821	HepG2	AQR
chr7	44607776	44607818	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.47282	4.05213	HepG2	LSM11
chr7	44609432	44609476	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.91109	7.94000	HepG2	PABPN1
chr7	44609478	44609567	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.26088	15.56693	HepG2	SF3B4
chr7	44608578	44608624	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.59471	9.43475	HepG2	PRPF8
chr7	44609614	44609709	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.72976	8.87335	HepG2	PABPN1
chr7	44608581	44608591	-	3'-UTR,CDS,intron-Distal	3.35496	7.64107	HepG2	PPIG
chr7	44609519	44609587	-	3'-UTR,intron-Distal,intron-Proximal	3.48117	9.01406	K562	PRPF8
chr7	44608521	44608570	-	3'-UTR,CDS,intron-Distal	3.72537	10.81930	HepG2	PPIG
chr7	44606007	44606056	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.52256	4.50387	HepG2	AQR
chr7	44606045	44606073	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.94137	6.54234	HepG2	LSM11
chr7	44605652	44605678	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.84702	6.14855	HepG2	PABPN1
chr7	44610453	44610545	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.23863	7.13900	K562	AQR
chr7	44606086	44606163	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.01981	6.34541	K562	BUD13
chr7	44608516	44608557	-	3'-UTR,CDS,intron-Distal	4.35188	4.43680	K562	ZNF622
chr7	44609478	44609555	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.47159	17.60244	K562	SF3B4
chr7	44607699	44607718	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.07707	5.63763	K562	AQR
chr7	44610464	44610546	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.64549	11.21499	HepG2	AQR
chr7	44607787	44607854	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.65416	8.54916	K562	SF3B4
chr7	44609407	44609432	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.12319	7.48781	HepG2	PABPN1
chr7	44610470	44610547	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.68265	5.37645	HepG2	SF3A3
chr7	44606086	44606120	-	3'-UTR,CDS,intron-Distal	3.31458	8.00708	HepG2	PPIG
chr7	44609497	44609562	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.43935	7.83535	HepG2	SF3A3
chr7	44609369	44609411	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.68465	6.87708	HepG2	EFTUD2
chr7	44608758	44608802	-	3'-UTR,CDS,intron-Distal	3.53350	6.19265	HepG2	LSM11
chr7	44607777	44607829	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.52591	3.99381	K562	BUD13
chr7	44606076	44606124	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.10987	11.51390	HepG2	PABPN1
chr7	44608727	44608781	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.12767	11.92860	HepG2	PPIG
chr7	44608488	44608665	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.66497	8.91632	HepG2	AQR
chr7	44610451	44610486	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.16663	8.60674	HepG2	BUD13
chr7	44607770	44607820	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.16603	12.82053	HepG2	PPIG
chr7	44609356	44609412	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.68252	9.23760	K562	AQR
chr7	44605657	44605677	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.66530	4.46864	HepG2	BCLAF1
chr7	44608782	44608837	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.99211	5.69951	K562	AQR
chr7	44609532	44609607	-	3'-UTR,intron-Distal,intron-Proximal	4.01658	17.34320	HepG2	PRPF8
chr7	44610356	44610428	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.20003	13.50168	HepG2	PPIG
chr7	44605652	44605678	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.05762	3.51598	HepG2	LSM11
chr7	44607726	44607822	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.47263	7.65887	HepG2	GRWD1
chr7	44609407	44609483	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.45251	5.26861	K562	DDX24
chr7	44610381	44610439	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.37282	6.60490	HepG2	BCLAF1
chr7	44606045	44606076	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.05656	10.75028	HepG2	PABPN1
chr7	44609479	44609569	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.77109	6.93060	K562	EFTUD2
chr7	44609408	44609432	-	3'-UTR,5'-UTR,CDS,intron-Distal	4.30260	3.37376	HepG2	LSM11
chr7	44607716	44607805	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.96825	10.14345	HepG2	PABPN1
chr7	44605465	44605502	-	3'-UTR,intron-Distal,intron-Proximal	4.66277	4.78834	HepG2	PABPN1
chr7	44608501	44608521	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.20723	7.61685	HepG2	PPIG
chr7	44609494	44609559	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.74767	7.03098	HepG2	EFTUD2
chr7	44606091	44606164	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.28459	6.48405	K562	AQR
chr7	44610357	44610423	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.58906	4.40383	K562	UCHL5
chr7	44606047	44606068	-	3'-UTR,CDS,intron-Distal	4.01146	8.12130	HepG2	PPIG
chr7	44605652	44605687	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.93047	6.24305	HepG2	AQR
chr7	44606004	44606064	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.67235	17.48691	HepG2	PRPF8
chr7	44608789	44608836	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.86388	8.83373	HepG2	EFTUD2
chr7	44610360	44610453	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.71743	12.35564	HepG2	PABPN1
chr7	44610443	44610482	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.43684	4.17944	K562	BUD13
chr7	44608730	44608799	-	3'-UTR,CDS,intron-Distal	4.04853	9.96270	HepG2	PABPN1
chr7	44610310	44610359	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.54985	3.32531	K562	AQR
chr7	44605651	44605709	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.14022	5.07297	K562	BUD13
chr7	44609401	44609453	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.69091	3.41051	HepG2	SRSF1
chr7	44608675	44608779	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.81982	11.94131	HepG2	PRPF8
chr7	44613428	44613527	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.76367	6.30252	K562	DDX3X
chr7	44613835	44613893	-	5'-UTR,intron-Distal	5.86168	10.07464	K562	SF3B4
chr7	44611955	44612020	-	5'-UTR,CDS,intron-Distal	3.66813	6.23335	HepG2	GRWD1
chr7	44613811	44613837	-	5'-UTR,intron-Distal	4.39234	6.01372	K562	AQR
chr7	44611091	44611132	-	5'-UTR,CDS,intron-Distal	3.71657	4.88837	HepG2	PABPN1
chr7	44611295	44611315	-	5'-UTR,CDS,intron-Distal	5.07551	7.25958	HepG2	PPIG
chr7	44612171	44612202	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.12982	5.16947	HepG2	LSM11
chr7	44614288	44614391	-	5'-UTR,intron-Distal	4.82290	4.95161	K562	GTF2F1
chr7	44611046	44611118	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.63568	4.07440	K562	PRPF8
chr7	44613847	44613893	-	5'-UTR,intron-Distal	4.42349	9.75000	HepG2	SF3B4
chr7	44611095	44611175	-	5'-UTR,CDS,intron-Distal	4.02544	4.13881	HepG2	PRPF4
chr7	44613492	44613562	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.82691	3.34231	K562	RBM15
chr7	44612146	44612186	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.70105	5.13777	HepG2	PRPF8
chr7	44613749	44613838	-	5'-UTR,intron-Distal	5.95876	15.04783	HepG2	AQR
chr7	44614261	44614397	-	5'-UTR,intron-Distal	3.56218	7.70677	K562	HNRNPL
chr7	44614312	44614394	-	5'-UTR,intron-Distal	3.07412	4.97814	HepG2	GTF2F1
chr7	44613838	44613888	-	5'-UTR,intron-Distal	5.09405	7.45424	HepG2	AQR
chr7	44613760	44613811	-	5'-UTR,intron-Distal	5.78459	8.83608	K562	AQR
chr7	44611058	44611122	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.53340	13.83580	HepG2	PRPF8
chr7	44613736	44613802	-	5'-UTR,intron-Distal	3.04465	7.87128	HepG2	U2AF2
chr7	44613300	44613344	-	CDS,intron-Distal,intron-Proximal	3.22443	7.60977	HepG2	PPIG
chr7	44613315	44613342	-	CDS,intron-Distal,intron-Proximal	4.00567	10.11427	HepG2	BUD13
chr7	44605927	44605975	-	CDS,intron-Distal,intron-Proximal	5.16592	5.24235	HepG2	EFTUD2
chr7	44613434	44613477	-	CDS,intron-Distal,intron-Proximal	3.28487	7.15529	HepG2	PPIG
chr7	44613113	44613185	-	CDS,intron-Distal,intron-Proximal	3.42816	7.76128	K562	PRPF8
chr7	44612500	44612527	-	CDS,intron-Distal	4.15244	7.49899	HepG2	PPIG
chr7	44613433	44613464	-	CDS,intron-Distal,intron-Proximal	3.42482	7.62584	HepG2	BUD13
chr7	44612616	44612656	-	CDS,intron-Distal,intron-Proximal	3.28874	4.81603	K562	BUD13
chr7	44613067	44613122	-	intron-Distal,intron-Proximal	4.45716	3.96990	K562	BUD13
chr7	44613050	44613113	-	intron-Distal,intron-Proximal	3.95439	8.87031	K562	PRPF8
chr7	44613054	44613110	-	intron-Distal,intron-Proximal	4.70292	10.88777	HepG2	EFTUD2
chr7	44612665	44612711	-	intron-Distal,intron-Proximal	5.06316	5.58150	K562	SF3B4
chr7	44609516	44609539	-	intron-Distal,intron-Proximal	4.05215	3.00996	K562	BUD13
chr7	44613066	44613180	-	intron-Distal,intron-Proximal	3.96466	10.43758	K562	AQR
chr7	44608646	44608702	-	intron-Distal,intron-Proximal	4.96181	4.83371	K562	EFTUD2
chr7	44608446	44608499	-	intron-Distal,intron-Proximal	3.89579	4.52312	K562	AQR
chr7	44609356	44609393	-	intron-Distal,intron-Proximal	4.14591	10.32093	HepG2	PRPF8
chr7	44607674	44607699	-	intron-Distal,intron-Proximal	4.99211	5.65342	K562	AQR
chr7	44612069	44612133	-	intron-Distal,intron-Proximal	3.52554	5.90858	HepG2	EFTUD2
chr7	44610479	44610556	-	intron-Distal,intron-Proximal	3.94294	4.84442	HepG2	SF3B4
chr7	44608859	44608921	-	intron-Distal,intron-Proximal	3.05449	3.75247	HepG2	SF3B4
chr7	44605687	44605734	-	intron-Distal,intron-Proximal	4.99083	7.45424	HepG2	AQR
chr7	44607611	44607647	-	intron-Distal,intron-Proximal	5.50139	7.41664	HepG2	EFTUD2
chr7	44609368	44609407	-	intron-Distal,intron-Proximal	4.46379	4.97857	HepG2	AQR
chr7	44613110	44613162	-	intron-Distal,intron-Proximal	4.31540	10.85510	HepG2	EFTUD2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for DDX56 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for DDX56 is not available on ENCORE database.
73 RBPs can affect the levels of DDX56.

The Knockdown/knockout RNA-Seq assay for DDX56 is not available on ENCORE database.

73 RBPs can affect the gene expression of DDX56 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
DDX56	ENSG00000136271.6	1427.33510	1136.70230	0.32840	4.43870	3.70420	HepG2	ACO1
DDX56	ENSG00000136271.6	1472.21970	1140.12590	0.36870	2.58440	1.82390	HepG2	ASCC1
DDX56	ENSG00000136271.6	1369.41860	1878.48390	-0.45600	8.36640	7.28020	HepG2	AUH
DDX56	ENSG00000136271.6	1177.55120	676.22740	0.80010	10.66320	9.58730	HepG2	BOP1
DDX56	ENSG00000136271.6	549.70690	706.92690	-0.36290	2.47210	1.73990	HepG2	CALR
DDX56	ENSG00000136271.6	1461.64440	1136.36450	0.36310	5.68180	4.79120	HepG2	CKAP4
DDX56	ENSG00000136271.6	952.53590	743.98950	0.35640	2.30980	1.31860	HepG2	CSTF2
DDX56	ENSG00000136271.6	1787.49510	1540.72210	0.21420	2.04470	1.47700	HepG2	CELF1
DDX56	ENSG00000136271.6	1011.98840	767.65280	0.39860	2.62830	1.72720	HepG2	EEF2
DDX56	ENSG00000136271.6	807.78830	1089.97610	-0.43220	3.05380	2.43180	HepG2	EIF2S1
DDX56	ENSG00000136271.6	1578.20300	1204.44760	0.38980	2.58850	1.96900	HepG2	EIF4A3
DDX56	ENSG00000136271.6	1605.40970	1172.89750	0.45280	2.65750	1.98230	HepG2	EIF4B
DDX56	ENSG00000136271.6	1504.70690	1215.55220	0.30780	1.95720	1.37100	HepG2	FXR1
DDX56	ENSG00000136271.6	1687.55340	1197.13560	0.49520	4.55880	3.40420	HepG2	G3BP2
DDX56	ENSG00000136271.6	1062.46770	1253.49080	-0.23850	2.30820	1.64900	HepG2	HNRNPF
DDX56	ENSG00000136271.6	1473.96210	1142.01920	0.36800	2.84950	2.14020	HepG2	HNRNPK
DDX56	ENSG00000136271.6	1592.78430	1145.95630	0.47490	4.13050	3.32020	HepG2	IGF2BP2
DDX56	ENSG00000136271.6	1457.40640	1024.87950	0.50780	3.51870	2.58070	HepG2	LARP4
DDX56	ENSG00000136271.6	1886.85490	1215.97800	0.63380	6.69250	5.68520	HepG2	MAGOH
DDX56	ENSG00000136271.6	1732.36450	1222.73240	0.50250	3.97590	3.23210	HepG2	MATR3
DDX56	ENSG00000136271.6	566.48380	732.86070	-0.37150	2.72210	1.51450	HepG2	NAA15
DDX56	ENSG00000136271.6	453.50830	595.48020	-0.39290	2.19900	1.53000	HepG2	NSUN2
DDX56	ENSG00000136271.6	1654.17470	1145.08160	0.53060	9.95300	8.91610	HepG2	PCBP1
DDX56	ENSG00000136271.6	1239.01800	877.73900	0.49720	2.84440	1.78910	HepG2	PCBP2
DDX56	ENSG00000136271.6	732.88240	923.45770	-0.33350	3.29700	2.45990	HepG2	PRPF4
DDX56	ENSG00000136271.6	1157.76230	1802.73230	-0.63880	12.31010	11.37730	HepG2	RBM22
DDX56	ENSG00000136271.6	814.75790	606.36760	0.42610	3.29820	2.63430	HepG2	RPS19
DDX56	ENSG00000136271.6	1168.93790	820.22010	0.51100	3.20610	2.34650	HepG2	RPS3A
DDX56	ENSG00000136271.6	1765.10180	1107.49980	0.67230	5.59540	4.61630	HepG2	SF3A3
DDX56	ENSG00000136271.6	1133.32370	1503.59580	-0.40790	6.89440	5.86790	HepG2	SLBP
DDX56	ENSG00000136271.6	1537.19920	2036.06830	-0.40550	6.69120	6.00600	HepG2	SRFBP1
DDX56	ENSG00000136271.6	1830.15810	1266.19850	0.53140	10.51590	9.72570	HepG2	SRSF1
DDX56	ENSG00000136271.6	1965.18860	1548.30570	0.34390	5.08570	4.27740	HepG2	SRSF5
DDX56	ENSG00000136271.6	1597.49750	1030.12080	0.63290	14.33890	13.25950	HepG2	SRSF9
DDX56	ENSG00000136271.6	2091.28790	1767.69940	0.24240	2.84480	2.32680	HepG2	SSB
DDX56	ENSG00000136271.6	2012.40120	1760.85240	0.19250	2.15400	1.59250	HepG2	SUCLG1
DDX56	ENSG00000136271.6	947.16400	1138.11130	-0.26500	2.27060	1.75400	HepG2	TAF15
DDX56	ENSG00000136271.6	1890.20120	1532.00130	0.30300	2.75380	1.88310	HepG2	TUFM
DDX56	ENSG00000136271.6	1340.16800	1009.53680	0.40860	5.39610	3.97500	HepG2	UTP18
DDX56	ENSG00000136271.6	1388.23480	948.25820	0.54980	9.97850	8.95310	HepG2	UTP3
DDX56	ENSG00000136271.6	1579.41010	1160.59230	0.44440	3.35100	2.55810	HepG2	XRN2
DDX56	ENSG00000136271.6	677.28840	911.36690	-0.42830	4.92660	4.07390	HepG2	ZC3H8
DDX56	ENSG00000136271.6	1512.51730	1095.00320	0.46590	4.86370	3.24290	K562	AARS
DDX56	ENSG00000136271.6	1642.23640	2110.61420	-0.36200	3.00490	1.72320	K562	ABCF1
DDX56	ENSG00000136271.6	1363.30880	1647.06110	-0.27280	2.15830	1.30850	K562	BCLAF1
DDX56	ENSG00000136271.6	674.87260	871.05480	-0.36810	2.53190	1.53240	K562	CCAR1
DDX56	ENSG00000136271.6	1311.54820	1652.17590	-0.33310	3.28250	1.62940	K562	CEBPZ
DDX56	ENSG00000136271.6	735.35330	936.01680	-0.34810	2.85800	1.79830	K562	DDX3X
DDX56	ENSG00000136271.6	2841.22140	1677.54580	0.76010	6.79480	5.83830	K562	DDX47
DDX56	ENSG00000136271.6	2080.24080	2551.74550	-0.29470	3.85910	3.03210	K562	EIF2S2
DDX56	ENSG00000136271.6	1588.58490	813.00980	0.96630	24.00300	21.64050	K562	EIF3G
DDX56	ENSG00000136271.6	760.39620	1040.21590	-0.45210	3.29010	2.04180	K562	FKBP4
DDX56	ENSG00000136271.6	661.30100	916.89750	-0.47150	3.83650	2.82260	K562	FMR1
DDX56	ENSG00000136271.6	553.04160	777.18530	-0.49090	3.53580	2.49340	K562	FTO
DDX56	ENSG00000136271.6	2242.91870	1016.91380	1.14110	31.58940	29.67970	K562	FXR1
DDX56	ENSG00000136271.6	372.09350	626.39740	-0.75140	4.98350	3.96980	K562	G3BP2
DDX56	ENSG00000136271.6	1318.28270	960.12930	0.45730	3.70830	2.25650	K562	HNRNPK
DDX56	ENSG00000136271.6	441.83190	734.64800	-0.73360	4.04270	2.89590	K562	KRR1
DDX56	ENSG00000136271.6	1543.35060	1010.48950	0.61090	8.22090	6.73500	K562	MAGOH
DDX56	ENSG00000136271.6	1350.77750	1008.34730	0.42170	4.33520	3.15630	K562	MATR3
DDX56	ENSG00000136271.6	1384.40450	1650.11050	-0.25330	3.63050	2.78900	K562	NSUN2
DDX56	ENSG00000136271.6	1429.52420	898.97470	0.66910	7.65250	5.99870	K562	PCBP2
DDX56	ENSG00000136271.6	1516.20840	1970.60180	-0.37820	2.82970	1.98810	K562	PCBP3
DDX56	ENSG00000136271.6	2098.96210	1391.20270	0.59320	6.84930	5.66840	K562	PRPF8
DDX56	ENSG00000136271.6	1904.15220	981.79920	0.95550	16.18090	14.64620	K562	PTBP1
DDX56	ENSG00000136271.6	381.48560	597.67130	-0.64770	3.04050	1.54700	K562	RAVER1
DDX56	ENSG00000136271.6	1457.36620	990.43140	0.55710	2.65110	1.58420	K562	NELFE
DDX56	ENSG00000136271.6	2168.15830	1416.94300	0.61360	5.91640	4.71640	K562	RPS19
DDX56	ENSG00000136271.6	882.01650	573.06960	0.62200	3.51360	2.37340	K562	RPS3
DDX56	ENSG00000136271.6	1827.58800	1346.90440	0.44020	4.82560	3.39410	K562	SAFB
DDX56	ENSG00000136271.6	554.73140	818.26360	-0.56080	3.94370	2.77100	K562	SF3B1
DDX56	ENSG00000136271.6	684.96810	959.50390	-0.48630	4.21410	2.63130	K562	SLBP
DDX56	ENSG00000136271.6	1675.83480	962.55860	0.79980	14.38740	12.77080	K562	SRSF1
DDX56	ENSG00000136271.6	1333.29350	1720.36590	-0.36770	4.07920	2.21980	K562	SRSF9
DDX56	ENSG00000136271.6	1366.44820	1820.68590	-0.41410	3.19460	1.83340	K562	STAU1
DDX56	ENSG00000136271.6	1043.94940	1346.71050	-0.36740	2.47150	1.51690	K562	SUPV3L1
DDX56	ENSG00000136271.6	2202.29710	1516.11040	0.53850	8.36380	6.92930	K562	SYNCRIP
DDX56	ENSG00000136271.6	1469.04810	974.02540	0.59280	5.93760	4.87330	K562	TARDBP
DDX56	ENSG00000136271.6	1924.20950	2428.10280	-0.33560	4.27930	2.69710	K562	TROVE2
DDX56	ENSG00000136271.6	466.29120	627.13270	-0.42750	3.31480	2.43800	K562	U2AF2
DDX56	ENSG00000136271.6	1053.51260	1425.46450	-0.43620	3.75400	2.55140	K562	UCHL5
DDX56	ENSG00000136271.6	1507.28920	1749.64430	-0.21510	2.32960	1.66730	K562	UPF1
DDX56	ENSG00000136271.6	1101.57040	1497.12000	-0.44260	4.83340	3.65810	K562	WDR3
DDX56	ENSG00000136271.6	2035.03800	1161.05000	0.80950	4.80590	2.56660	K562	XRCC6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for DDX56 is not available on ENCORE database.

14 RBPs can affect the splicing of DDX56 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	DDX56	ENSG00000136271.6	chr7	-	44608728	44608917	44608728	44608802	44609407	44609502	0.05700	0.00011	0.01669	longer	K562	EFTUD2
A3SS	DDX56	ENSG00000136271.6	chr7	-	44606046	44606228	44606046	44606123	44607716	44607822	0.05500	0.00034	0.03451	longer	HepG2	RBM22
A3SS	DDX56	ENSG00000136271.6	chr7	-	44609613	44609832	44609613	44609727	44610356	44610539	0.08400	0.00000	0.00000	longer	K562	AQR
A3SS	DDX56	ENSG00000136271.6	chr7	-	44608728	44608917	44608728	44608802	44609407	44609444	0.08800	0.00000	0.00000	longer	K562	AQR
A3SS	DDX56	ENSG00000136271.6	chr7	-	44608501	44608641	44608501	44608591	44608728	44608802	0.17100	0.00000	0.00000	longer	K562	AQR
A3SS	DDX56	ENSG00000136271.6	chr7	-	44610356	44610593	44610356	44610476	44611090	44611335	0.09500	0.00000	0.00000	longer	K562	AQR
A3SS	DDX56	ENSG00000136271.6	chr7	-	44606046	44606140	44606046	44606123	44607716	44607822	0.07100	0.00004	0.00041	longer	K562	AQR
A3SS	DDX56	ENSG00000136271.6	chr7	-	44612488	44612671	44612488	44612649	44613181	44613343	0.06200	0.00001	0.00010	longer	K562	AQR
A3SS	DDX56	ENSG00000136271.6	chr7	-	44607716	44607881	44607716	44607822	44608501	44608591	0.05800	0.00006	0.00457	longer	K562	PUS1
A3SS	DDX56	ENSG00000136271.6	chr7	-	44608728	44608917	44608728	44608802	44609407	44609502	0.05200	0.00033	0.04977	longer	K562	PRPF8
A5SS	DDX56	ENSG00000136271.6	chr7	-	44609582	44609727	44609613	44609727	44609407	44609502	0.15000	0.00000	0.00079	longer	K562	RBM22
A5SS	DDX56	ENSG00000136271.6	chr7	-	44612161	44612343	44612172	44612343	44611945	44612036	0.25000	0.00000	0.00012	longer	K562	RBM22
A5SS	DDX56	ENSG00000136271.6	chr7	-	44612161	44612343	44612172	44612343	44611945	44612036	0.19700	0.00000	0.00011	longer	K562	PUS1
A5SS	DDX56	ENSG00000136271.6	chr7	-	44612161	44612343	44612172	44612343	44611945	44612036	0.15900	0.00000	0.00000	longer	K562	AQR
A5SS	DDX56	ENSG00000136271.6	chr7	-	44609582	44609727	44609613	44609727	44609407	44609502	0.18000	0.00000	0.00000	longer	HepG2	RBM22
A5SS	DDX56	ENSG00000136271.6	chr7	-	44612161	44612343	44612172	44612343	44611945	44612036	0.28400	0.00000	0.00000	longer	HepG2	RBM22
A5SS	DDX56	ENSG00000136271.6	chr7	-	44612161	44612343	44612172	44612343	44611945	44612036	0.15200	0.00001	0.00173	longer	K562	HNRNPC
A5SS	DDX56	ENSG00000136271.6	chr7	-	44612161	44612343	44612172	44612343	44611945	44612036	-0.08600	0.00024	0.03484	shorter	K562	PTBP1
A5SS	DDX56	ENSG00000136271.6	chr7	-	44612161	44612343	44612172	44612343	44611945	44612036	0.14300	0.00007	0.04660	longer	K562	GPKOW
A5SS	DDX56	ENSG00000136271.6	chr7	-	44612161	44612343	44612172	44612343	44611945	44612036	0.15500	0.00044	0.04202	longer	K562	RBM15
A5SS	DDX56	ENSG00000136271.6	chr7	-	44612161	44612343	44612172	44612343	44611945	44612036	-0.10400	0.00008	0.01214	shorter	K562	FXR1
A5SS	DDX56	ENSG00000136271.6	chr7	-	44612161	44612343	44612172	44612343	44611945	44612036	0.17200	0.00000	0.00096	longer	K562	UTP18
A5SS	DDX56	ENSG00000136271.6	chr7	-	44612161	44612343	44612172	44612343	44611945	44612036	-0.09000	0.00014	0.04375	shorter	K562	HNRNPK
RI	DDX56	ENSG00000136271.6	chr7	-	44613181	44613524	44613181	44613343	44613434	44613524	-0.10300	0.00853	0.07615	excluded	HepG2	SF3A3
RI	DDX56	ENSG00000136271.6	chr7	-	44613181	44613524	44613181	44613343	44613434	44613524	0.05400	0.00075	0.06858	included	K562	TROVE2
RI	DDX56	ENSG00000136271.6	chr7	-	44613181	44613524	44613181	44613343	44613434	44613524	0.06500	0.00001	0.00017	included	HepG2	RBM22
RI	DDX56	ENSG00000136271.6	chr7	-	44613181	44613524	44613181	44613343	44613434	44613524	0.13200	0.00000	0.00000	included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

DDX56

General Information

Functions

Localization

Domains (AlphaFold: DDX56)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for DDX56 is not avaliable on ENCORE database.

21 proteins are bound to DDX56 RNA:

eCLIP assay for DDX56 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for DDX56 is not available on ENCORE database.

73 RBPs can affect the gene expression of DDX56 :

The Knockdown/knockout RNA-Seq assay for DDX56 is not available on ENCORE database.

14 RBPs can affect the splicing of DDX56 :

The Knockdown/knockout RNA-Seq assay for DDX56 is not avaliable on ENCORE database.