COL4A5

General Information

Gene Name       : COL4A5
Gene ID             : ENSG00000188153.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: COL4A5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COL4A5ENSG00000188153.130.420.260.34ENCSR000AEF
HepG2COL4A5ENSG00000188153.1326.0332.6329.33ENCSR985KAT
K562COL4A5ENSG00000188153.130.861.301.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COL4A5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • COL4A5 RNA is bound by 18 proteins.  







eCLIP assay for COL4A5 is not avaliable on ENCORE database.





18 proteins are bound to COL4A5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX107939645107939720+3'-UTR3.073823.37563HepG2FUBP3
chrX107940532107940598+3'-UTR4.372305.03266HepG2LSM11
chrX107940540107940605+3'-UTR3.455414.49115HepG2LARP4
chrX107683206107683272+5'-UTR3.097214.86366HepG2EIF3D
chrX107869459107869512+CDS4.913075.84094HepG2SND1
chrX107840738107840800+CDS,intron-Proximal4.043184.54756HepG2SRSF1
chrX107815035107815077+CDS,intron-Proximal3.124343.80334HepG2U2AF2
chrX107920832107920861+CDS3.912705.52342HepG2PPIG
chrX107923907107923930+CDS,intron-Proximal3.495384.34695HepG2BCLAF1
chrX107863501107863545+CDS4.000614.95361HepG2SND1
chrX107823910107823965+CDS,intron-Proximal3.668659.47710HepG2PPIG
chrX107823766107823805+CDS4.905636.73605HepG2SND1
chrX107840712107840764+CDS5.115555.54337HepG2SND1
chrX107840578107840650+CDS,intron-Proximal4.2316815.43672HepG2U2AF2
chrX107858197107858238+CDS3.112794.24433HepG2SND1
chrX107867492107867532+CDS4.045377.05872HepG2PPIG
chrX107838783107838829+CDS3.591488.46997HepG2PPIG
chrX107840596107840648+CDS,intron-Proximal3.118593.30246HepG2U2AF1
chrX107807111107807151+CDS,intron-Proximal4.029966.81385HepG2BCLAF1
chrX107826115107826152+CDS3.920377.55042HepG2PPIG
chrX107924991107925015+CDS4.730924.78529HepG2BCLAF1
chrX107821579107821614+CDS,intron-Proximal6.4184622.26099HepG2PPIG
chrX107783019107783035+CDS3.014005.54641HepG2PPIG
chrX107846198107846286+CDS3.159053.49429HepG2SRSF1
chrX107845100107845144+CDS,intron-Proximal3.622363.55754HepG2U2AF2
chrX107823765107823817+CDS,intron-Proximal4.5305026.22110HepG2PPIG
chrX107829887107829974+CDS6.5258821.94431HepG2PPIG
chrX107814641107814697+CDS,intron-Proximal4.3242615.80856HepG2PPIG
chrX107811990107812052+CDS,intron-Proximal4.043457.55042HepG2PPIG
chrX107816829107816870+CDS3.454625.90680HepG2PPIG
chrX107858156107858237+CDS3.956733.66700HepG2SRSF1
chrX107829890107829975+CDS4.7097113.76815HepG2BCLAF1
chrX107845197107845215+CDS4.422593.89826HepG2BCLAF1
chrX107840268107840297+CDS3.238326.58818HepG2PPIG
chrX107909725107909763+CDS,intron-Proximal3.174253.47170HepG2SND1
chrX107924138107924165+CDS3.101483.47879HepG2PPIG
chrX107807111107807154+CDS,intron-Proximal3.486487.16988HepG2PPIG
chrX107802297107802340+CDS4.461597.53358HepG2BCLAF1
chrX107782975107782989+CDS,intron-Proximal4.334648.06490HepG2PPIG
chrX107841946107842030+CDS3.381175.69819HepG2SND1
chrX107925029107925079+CDS4.198973.47103HepG2LIN28B
chrX107911628107911694+CDS4.228455.51172HepG2SND1
chrX107865908107865951+CDS4.958615.87377HepG2PPIG
chrX107783004107783019+CDS3.196224.69671HepG2PPIG
chrX107834807107834844+CDS3.596944.39950HepG2SND1
chrX107898567107898576+CDS4.062483.93645HepG2PPIG
chrX107844706107844753+CDS,intron-Proximal4.898769.23918HepG2PRPF8
chrX107863630107863685+CDS,intron-Proximal6.5611520.82313HepG2PRPF8
chrX107815039107815063+CDS,intron-Proximal3.261385.08732HepG2PPIG
chrX107898560107898591+CDS,intron-Proximal4.556484.06516HepG2SND1
chrX107823762107823765+CDS,intron-Proximal5.3991419.28882HepG2PPIG
chrX107823763107823802+CDS4.650117.97334HepG2BCLAF1
chrX107841916107842003+CDS,intron-Proximal3.7761811.80297HepG2U2AF2
chrX107863556107863578+CDS3.590124.68902HepG2PPIG
chrX107683393107683438+CDS,intron-Proximal3.8305111.41042HepG2PPIG
chrX107845119107845168+CDS3.667675.29565HepG2SND1
chrX107924122107924172+CDS4.452185.20042HepG2SND1
chrX107844694107844706+CDS4.9774713.40522HepG2PRPF8
chrX107823914107823934+CDS4.054106.23296HepG2BCLAF1
chrX107844607107844690+CDS,intron-Proximal4.2211012.93110HepG2U2AF2
chrX107863553107863599+CDS3.288993.47170HepG2SND1
chrX107920835107920885+CDS,intron-Proximal3.207366.18341HepG2PRPF8
chrX107920731107920751+CDS4.056483.19000HepG2SND1
chrX107840606107840647+CDS,intron-Proximal3.754815.90680HepG2PPIG
chrX107814626107814697+CDS,intron-Proximal3.7130011.22616HepG2U2AF2
chrX107802346107802382+CDS5.854899.78817HepG2BCLAF1
chrX107869570107869575+CDS4.948784.84481HepG2PPIG
chrX107821524107821573+CDS3.591037.09278HepG2PPIG
chrX107865907107865945+CDS3.404325.40132HepG2BCLAF1
chrX107802293107802384+CDS,intron-Proximal4.4011626.97572HepG2PPIG
chrX107834380107834439+CDS3.208874.85880HepG2PPIG
chrX107912393107912491+intron-Distal4.183434.47262HepG2DROSHA
chrX107812748107812798+intron-Distal3.221826.83989HepG2U2AF2
chrX107762294107762387+intron-Distal4.037523.50357HepG2QKI
chrX107847406107847470+intron-Distal4.022843.63454HepG2SUGP2
chrX107815826107815877+intron-Distal3.959783.73283HepG2HNRNPL
chrX107850624107850692+intron-Distal4.513904.97123HepG2PCBP2
chrX107698304107698362+intron-Distal4.806385.68967HepG2PCBP2
chrX107922862107922918+intron-Distal4.601835.89032HepG2QKI
chrX107864341107864402+intron-Distal4.227583.78533HepG2PTBP1
chrX107815742107815820+intron-Distal3.657065.63547HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COL4A5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COL4A5 is not available on ENCORE database.

  • 118 RBPs can affect the levels of COL4A5.  








The Knockdown/knockout RNA-Seq assay for COL4A5 is not available on ENCORE database.





118 RBPs can affect the gene expression of COL4A5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COL4A5ENSG00000188153.82534.112101784.017800.506306.333204.78110HepG2AATF
COL4A5ENSG00000188153.83178.685701613.104000.9785016.7317014.77700HepG2ABCF1
COL4A5ENSG00000188153.82222.174601490.119500.576406.702405.23620HepG2ADAR
COL4A5ENSG00000188153.83506.794502505.995100.484704.330603.03700HepG2AKAP8
COL4A5ENSG00000188153.83170.652002023.047400.6481018.6860016.94370HepG2AKAP8L
COL4A5ENSG00000188153.83549.400102712.386000.387907.668906.61830HepG2AUH
COL4A5ENSG00000188153.81085.735301693.48490-0.641306.175704.75260HepG2BCCIP
COL4A5ENSG00000188153.82857.508101068.905701.4185040.2423038.45660HepG2BOP1
COL4A5ENSG00000188153.81551.266601208.593800.360003.310701.97090HepG2BUD13
COL4A5ENSG00000188153.81816.862001282.191100.502706.979205.82570HepG2CALR
COL4A5ENSG00000188153.83429.666402488.848600.462504.475203.50380HepG2CIRBP
COL4A5ENSG00000188153.82837.582302013.140500.4951014.0409012.78430HepG2CKAP4
COL4A5ENSG00000188153.82312.13630981.312901.2363027.3494025.47800HepG2CPSF6
COL4A5ENSG00000188153.82860.447001045.947201.4513038.6335035.73670HepG2CSTF2
COL4A5ENSG00000188153.81875.679102463.52750-0.393306.488905.58320HepG2CELF1
COL4A5ENSG00000188153.83703.915401967.666000.9125019.8576018.24540HepG2DDX21
COL4A5ENSG00000188153.82354.056501926.048700.289402.774601.85990HepG2DDX24
COL4A5ENSG00000188153.81164.402501665.08620-0.516004.327803.38340HepG2DDX55
COL4A5ENSG00000188153.83332.397802605.071300.355102.460701.87570HepG2DDX6
COL4A5ENSG00000188153.83674.671101926.484500.9315038.4184036.66340HepG2DKC1
COL4A5ENSG00000188153.81222.112701500.45510-0.296003.079102.34130HepG2DNAJC21
COL4A5ENSG00000188153.8856.743101480.58340-0.789209.234807.68180HepG2EIF3D
COL4A5ENSG00000188153.82874.585901858.500400.6291011.312009.42800HepG2EIF3G
COL4A5ENSG00000188153.84455.961602767.995000.686807.999006.91510HepG2EIF4A3
COL4A5ENSG00000188153.83903.145102694.782300.534404.008503.18750HepG2EIF4B
COL4A5ENSG00000188153.83381.762102613.320100.371806.936905.72210HepG2EIF4G1
COL4A5ENSG00000188153.83302.729502503.419100.399703.882702.92790HepG2EIF4G2
COL4A5ENSG00000188153.82497.396901397.372200.8376014.2259012.07660HepG2ESF1
COL4A5ENSG00000188153.85521.345103114.297100.8260034.3569032.66520HepG2ETF1
COL4A5ENSG00000188153.82369.714501967.630200.268202.327101.56180HepG2EWSR1
COL4A5ENSG00000188153.81624.032501323.222200.295402.767301.59990HepG2FAM120A
COL4A5ENSG00000188153.81015.630901628.85250-0.681506.552805.41940HepG2FIP1L1
COL4A5ENSG00000188153.82878.299101583.589300.8619017.7859015.88720HepG2FUBP3
COL4A5ENSG00000188153.83752.685202325.234700.690405.947004.35970HepG2FUS
COL4A5ENSG00000188153.83168.148402590.564400.290301.904801.34790HepG2G3BP1
COL4A5ENSG00000188153.84442.742202749.944600.691909.926208.24300HepG2G3BP2
COL4A5ENSG00000188153.81774.168901318.276000.428403.621702.58550HepG2GEMIN5
COL4A5ENSG00000188153.86186.905303238.159500.9339010.202908.07580HepG2GRSF1
COL4A5ENSG00000188153.82937.726801514.830500.9554021.2043019.70420HepG2HNRNPA1
COL4A5ENSG00000188153.84079.316402887.365800.498503.908102.22720HepG2HNRNPAB
COL4A5ENSG00000188153.83013.545401684.986400.8386014.6465013.17600HepG2HNRNPC
COL4A5ENSG00000188153.81648.598903030.14870-0.878109.405406.77700HepG2HNRNPD
COL4A5ENSG00000188153.82224.127001772.601500.327304.510103.61970HepG2HNRNPF
COL4A5ENSG00000188153.83206.929902413.143700.4102010.663209.41870HepG2HNRNPL
COL4A5ENSG00000188153.81731.278301061.576800.705508.721107.67000HepG2HNRNPLL
COL4A5ENSG00000188153.81301.729201673.84500-0.362705.334004.51360HepG2HNRNPU
COL4A5ENSG00000188153.83560.762702728.496100.384002.616701.42610HepG2HSPD1
COL4A5ENSG00000188153.82114.447101745.495000.276502.424101.74460HepG2IGF2BP1
COL4A5ENSG00000188153.84415.736002470.965000.837503.863102.70060HepG2IGF2BP3
COL4A5ENSG00000188153.82406.070403410.22400-0.503203.331701.86630HepG2ILF3
COL4A5ENSG00000188153.83264.340902318.026400.493803.837102.85570HepG2LARP4
COL4A5ENSG00000188153.81803.072902793.36890-0.631507.260606.21290HepG2MAGOH
COL4A5ENSG00000188153.81974.770302809.06730-0.508404.437303.65590HepG2MATR3
COL4A5ENSG00000188153.81703.291901318.307200.369502.835402.01720HepG2MSI2
COL4A5ENSG00000188153.82166.072301082.675001.0004010.126308.25090HepG2MTPAP
COL4A5ENSG00000188153.81669.321801106.982600.592507.759505.76080HepG2NAA15
COL4A5ENSG00000188153.83782.603502875.288900.395603.302302.61250HepG2NCBP2
COL4A5ENSG00000188153.81275.69890941.292400.438503.756302.88650HepG2NSUN2
COL4A5ENSG00000188153.81584.467502080.22590-0.392703.563601.73820HepG2NUP35
COL4A5ENSG00000188153.81910.262503196.99850-0.742905.078003.84340HepG2PABPC1
COL4A5ENSG00000188153.82213.343201656.798000.417707.322506.05190HepG2PARN
COL4A5ENSG00000188153.83015.725902623.466200.200902.262201.70310HepG2PCBP1
COL4A5ENSG00000188153.83712.948102201.183200.754206.511104.97160HepG2PCBP2
COL4A5ENSG00000188153.81938.592301492.932900.376805.114804.14150HepG2PPIL4
COL4A5ENSG00000188153.81805.187501217.592900.5680011.5798010.15540HepG2PRPF4
COL4A5ENSG00000188153.81721.755401284.273200.422803.207402.34380HepG2PRPF8
COL4A5ENSG00000188153.81956.044002669.36720-0.448608.954008.08300HepG2PTBP1
COL4A5ENSG00000188153.81327.180302507.46080-0.9179017.0741015.76630HepG2PUF60
COL4A5ENSG00000188153.83634.586502661.726400.4493013.6150012.50990HepG2PUM1
COL4A5ENSG00000188153.83588.237402891.220200.311503.822303.10470HepG2QKI
COL4A5ENSG00000188153.83132.645002602.952100.267103.037902.50210HepG2RBM22
COL4A5ENSG00000188153.83528.569702623.881400.427303.248902.52390HepG2RBM25
COL4A5ENSG00000188153.83416.569702409.711200.503606.025104.55890HepG2RBM27
COL4A5ENSG00000188153.81417.808201956.78710-0.464803.820002.56760HepG2RCC2
COL4A5ENSG00000188153.83467.829202766.770400.325705.504604.67190HepG2RECQL
COL4A5ENSG00000188153.82683.480201909.697600.490705.502304.58570HepG2RPLP0
COL4A5ENSG00000188153.83170.251102086.584600.603404.232103.06890HepG2RPS10
COL4A5ENSG00000188153.81906.432601440.653000.404104.371703.61680HepG2RPS19
COL4A5ENSG00000188153.83636.150302222.478400.7101011.322809.79700HepG2RPS2
COL4A5ENSG00000188153.84577.933503511.359500.382602.346701.60710HepG2RPS3A
COL4A5ENSG00000188153.82749.712501270.391801.1139017.7379016.06420HepG2RRP9
COL4A5ENSG00000188153.8982.772401445.95100-0.557105.472204.16100HepG2SERBP1
COL4A5ENSG00000188153.82728.733401385.381100.977803.141501.67710HepG2SF1
COL4A5ENSG00000188153.83429.281502404.153200.5123015.9428014.51260HepG2SLBP
COL4A5ENSG00000188153.82980.211502165.767900.460403.040802.03340HepG2SMNDC1
COL4A5ENSG00000188153.84098.175102939.896300.4791013.2799012.40010HepG2SRFBP1
COL4A5ENSG00000188153.82362.159901585.839300.574805.431003.29550HepG2SRP68
COL4A5ENSG00000188153.81879.176802900.95980-0.6264016.6962015.74210HepG2SRSF1
COL4A5ENSG00000188153.82888.677602475.687600.222502.651402.03560HepG2SRSF5
COL4A5ENSG00000188153.82054.246901741.562000.238102.472301.81040HepG2SRSF7
COL4A5ENSG00000188153.81644.650302360.01740-0.521009.134408.23540HepG2SRSF9
COL4A5ENSG00000188153.86972.584102552.452001.4497090.6556088.80200HepG2SSB
COL4A5ENSG00000188153.84208.657402718.650300.630406.829804.95270HepG2SSRP1
COL4A5ENSG00000188153.83871.790702815.594300.4595013.0352011.85160HepG2SUCLG1
COL4A5ENSG00000188153.81564.480501099.896800.508206.190304.82090HepG2SUPT6H
COL4A5ENSG00000188153.83231.112801657.507800.9629013.9860012.66080HepG2SUPV3L1
COL4A5ENSG00000188153.84024.951802607.277000.6263015.6150014.44520HepG2TAF15
COL4A5ENSG00000188153.82935.501001034.714301.5043030.6655028.73730HepG2TARDBP
COL4A5ENSG00000188153.83130.210602395.964500.385604.404103.35750HepG2TIA1
COL4A5ENSG00000188153.84878.972201626.387401.5848076.4653074.52050HepG2TIAL1
COL4A5ENSG00000188153.82236.532201640.996700.446608.732107.81810HepG2TRIM56
COL4A5ENSG00000188153.83361.202102449.594800.456306.280004.88150HepG2TUFM
COL4A5ENSG00000188153.81073.916901393.38910-0.375702.802702.17060HepG2U2AF1
COL4A5ENSG00000188153.81345.244201842.72190-0.454008.544007.58490HepG2UTP3
COL4A5ENSG00000188153.82599.001501201.626701.1129055.6217053.43840HepG2ZC3H8
COL4A5ENSG00000188153.82354.884802099.143800.165802.068001.57650HepG2ZNF622
COL4A5ENSG00000188153.82978.793702122.230900.489003.435401.98300HepG2ZRANB2
COL4A5ENSG00000188153.877.90310123.68550-0.666901.925501.43580K562AGGF1
COL4A5ENSG00000188153.863.98040128.69340-1.008204.053603.26180K562AKAP8L
COL4A5ENSG00000188153.878.20060147.24410-0.913003.348002.71490K562AQR
COL4A5ENSG00000188153.851.32180138.52700-1.432506.029004.66000K562DKC1
COL4A5ENSG00000188153.836.6432070.24410-0.938802.199001.38530K562EFTUD2
COL4A5ENSG00000188153.8286.44490171.094500.743404.689603.47900K562EIF4G2
COL4A5ENSG00000188153.815.1086077.40650-2.357108.638607.05010K562FIP1L1
COL4A5ENSG00000188153.857.22470114.41460-0.999602.488101.35020K562HNRNPA2B1
COL4A5ENSG00000188153.8108.9606062.613700.799202.316801.76410K562HNRNPC
COL4A5ENSG00000188153.8189.30680104.848100.852304.459503.08030K562HNRNPL
COL4A5ENSG00000188153.850.80170102.92620-1.018703.751802.70940K562HNRNPU
COL4A5ENSG00000188153.8218.9400087.679201.320107.826006.42490K562PCBP3
COL4A5ENSG00000188153.8184.0568067.263101.452209.265507.83500K562POLR2G
COL4A5ENSG00000188153.834.7572068.35590-0.975802.076101.42220K562PRPF8
COL4A5ENSG00000188153.828.0544068.47160-1.287303.907903.13190K562PTBP1
COL4A5ENSG00000188153.8102.06950186.67060-0.870903.918702.95210K562PUF60
COL4A5ENSG00000188153.866.44630127.67840-0.942302.619202.08740K562PUS1
COL4A5ENSG00000188153.859.89060124.36200-1.054102.964502.35460K562RBM15
COL4A5ENSG00000188153.8129.0372069.089300.901203.536902.28010K562NELFE
COL4A5ENSG00000188153.850.9046086.72030-0.768602.060201.34910K562SF3A3
COL4A5ENSG00000188153.812.6588067.12570-2.406707.572606.41090K562SRSF1
COL4A5ENSG00000188153.814.2558044.99820-1.658303.337902.11220K562U2AF1
COL4A5ENSG00000188153.8144.7688082.912600.804003.725302.75370K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COL4A5 is not available on ENCORE database.





7 RBPs can affect the splicing of COL4A5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECOL4A5ENSG00000188153.8chrX+107938496107938669107938036107938151107939526107940775-0.089000.002890.06252excludedHepG2HNRNPK
SECOL4A5ENSG00000188153.8chrX+107938496107938669107938036107938151107939526107940775-0.099000.000740.04520excludedHepG2NCBP2
SECOL4A5ENSG00000188153.8chrX+1078138781078140251078119881078120511078146421078146960.161000.000070.00515includedHepG2MATR3
SECOL4A5ENSG00000188153.8chrX+1076835701076837341076831111076834361077829751077830350.081000.000000.00015includedHepG2SRSF1
SECOL4A5ENSG00000188153.8chrX+107938496107938669107938036107938151107939526107940771-0.181000.000000.00001excludedHepG2SF3A3
SECOL4A5ENSG00000188153.8chrX+1079234581079235251079207291079208631079239081079239810.470000.000000.00001includedHepG2HNRNPU
SECOL4A5ENSG00000188153.8chrX+1079234581079235251079207291079208631079239081079239810.153000.000050.00613includedHepG2SRSF9

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for COL4A5 is not avaliable on ENCORE database.