CHD3

General Information

Gene Name       : CHD3
Gene ID             : ENSG00000170004.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHD3ENSG00000170004.1635.4436.7036.07ENCSR000AEF
HepG2CHD3ENSG00000170004.166.134.945.54ENCSR985KAT
K562CHD3ENSG00000170004.1617.8116.7017.25ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq CHD3-BGHcLV10-HepG2ENCSR242DBXCHD3HepG2ReleasedENCSR775ZWO   CRISPRKD% = 64.3,76.6






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
CHD3ENCAB509XJY200314-7F6CD1016Released, ENCODE3Released, ENCODE3BGHcLV10-9, Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
CHD3HepG2shRNABGHLV35-11,BGHLV35-12BGHLV35-1,BGHLV35-2NotSatisfiedENCODE3
CHD3K562CRISPRBGKcLV06-9,BGKcLV06-10BGKcLV06-1,BGKcLV06-2NotSatisfiedENCODE3
CHD3K562CRISPRBGKcLV08-11,BGKcLV08-12BGKcLV08-1,BGKcLV08-20.0,0.0NotSatisfiedENCODE4
CHD3K562CRISPRBGKcLV08-13,BGKcLV08-14BGKcLV08-1,BGKcLV08-20.0,0.0NotSatisfiedENCODE4
CHD3K562CRISPRBGKcLV11-27,BGKcLV11-28BGKcLV11-1,BGKcLV11-2NO CLEAR BAND ON THE POSITION,NotSatisfiedENCODE4
CHD3K562CRISPRBGKcLV11-29,BGKcLV11-30BGKcLV11-1,BGKcLV11-2NO CLEAR BAND ON THE POSITION,NotSatisfiedENCODE4
CHD3HepG2CRISPRBGHcLV07-9,BGHcLV07-10BGHcLV07-1,BGHcLV07-2no clear band,NotSatisfiedENCODE3
CHD3HepG2CRISPRENCSR242DBXENCSR775ZWOCHD3-BGHcLV10-9,CHD3-BGHcLV10-10NT-BGHcLV10-1,NT-BGHcLV10-264.3,76.6ReleasedENCODE4
CHD3HepG2CRISPRBGHcLV10-11,BGHcLV10-12BGHcLV10-1,BGHcLV10-218.8,36.5NotSatisfiedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
CHD3Product_ID: 200314-7F6
Lot_ID: CD1016
Source: Zen Bioscience
Target Name: CHD3-human		 CHD3_HepG2_revised.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using CHD3 specific antibody. Lane 1 is 1% of ten million whole cell lysate input (lane under '5% input') , lane 2 is 20% of IP enrichment using mouse normal IgG (lane under 'IgG') and lane 3 is 20% IP enrichment using mouse monoclonal anti-CHD3 antibody (lanes under 'anti-CHD3').
 CHD3-HEPG2-CRISPR.png<br>Caption: Western blot following CRISPR against CHD3 in HepG2 whole cell lysate using CHD3 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against CHD3. CHD3 protein appears as the green arrow, Tubulin serves as a control and appears in red arrow.
 CHD3_K562.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using CHD3 specific antibody. Lane 1 is 2% of ten million whole cell lysate input (lane under '10% input') , lane 2 is 20% of IP enrichment using mouse normal IgG (lane under 'IgG') and lane 3 is 20% IP enrichment using mouse monoclonal anti-CHD3 antibody (lanes under 'CHD3').








RNA Targets

  • eCLIP assay for CHD3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHD3 RNA is bound by 28 proteins.  







eCLIP assay for CHD3 is not avaliable on ENCORE database.





28 proteins are bound to CHD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1778126547812700+3'-UTR,CDS,intron-Proximal6.6679518.07825K562AQR
chr1778141347814177+3'-UTR,CDS,intron-Proximal4.618604.48002K562AQR
chr1778137017813780+3'-UTR,CDS,intron-Distal,intron-Proximal4.174113.77802HepG2U2AF2
chr1778126557812697+3'-UTR,CDS,intron-Proximal5.078208.16909HepG2AQR
chr1778136827813763+3'-UTR,CDS,intron-Distal,intron-Proximal3.255156.69302K562AQR
chr1778154117815495+3'-UTR3.236373.51962K562RBFOX2
chr1778136917813756+3'-UTR,CDS,intron-Distal,intron-Proximal4.6583412.63672K562PTBP1
chr1778136667813759+3'-UTR,CDS,intron-Distal,intron-Proximal5.2940315.30834HepG2PTBP1
chr1778153967815485+3'-UTR3.752894.14074K562UPF1
chr1778084427808482+5'-UTR,CDS3.007034.80218K562UCHL5
chr1778107467810794+5'-UTR,CDS4.755785.86954K562UCHL5
chr1778105347810566+5'-UTR,CDS,intron-Proximal4.176893.79199HepG2PPIG
chr1778112167811296+5'-UTR,CDS3.113915.65938K562FXR2
chr1778077697807854+5'-UTR,CDS3.672879.36208K562UCHL5
chr1778106707810714+5'-UTR,CDS,intron-Proximal3.285225.51984K562UCHL5
chr1778077647807843+5'-UTR,CDS3.699329.25079K562ZNF622
chr1778105387810565+5'-UTR,CDS3.098034.76588K562UCHL5
chr1778112887811332+5'-UTR,CDS4.428505.79396K562DDX24
chr1778112117811284+5'-UTR,CDS,intron-Proximal4.3974011.98560K562UCHL5
chr1778110017811020+5'-UTR,CDS,intron-Distal3.852105.08388K562UCHL5
chr1777972187797252+CDS3.239354.92880K562ZNF622
chr1778018507801905+CDS3.788593.43526K562GRWD1
chr1777939177793980+CDS3.087264.19577K562UCHL5
chr1777942577794345+CDS,intron-Proximal4.9579114.94214K562UCHL5
chr1777882347788282+CDS5.5289211.02908K562UCHL5
chr1777940507794059+CDS3.825643.18234K562BUD13
chr1777977357797794+CDS,intron-Proximal5.374089.82305K562ZNF622
chr1777939597794061+CDS,intron-Proximal3.060125.64464K562ZNF800
chr1777966157796700+CDS4.187044.88315K562GRWD1
chr1777975057797555+CDS4.068366.61895K562ZNF622
chr1777966477796714+CDS4.0984010.40438K562ZNF622
chr1777882647788385+CDS3.535629.54792K562PUM1
chr1777881777788280+CDS4.049713.56104K562CPSF6
chr1778024177802521+CDS,intron-Proximal3.384067.38488K562YBX3
chr1778005307800606+CDS3.802115.83654K562ZNF622
chr1777942647794356+CDS4.762195.38533HepG2ZNF800
chr1778018607801912+CDS4.6820011.10249K562UCHL5
chr1777966347796714+CDS3.528924.30396K562UCHL5
chr1777942597794346+CDS3.7596710.14758K562ZNF622
chr1778023977802450+CDS3.706483.77463K562ZNF800
chr1777971897797253+CDS4.5190510.38007K562UCHL5
chr1777974357797516+CDS,intron-Proximal3.527946.80450K562UCHL5
chr1777982417798275+CDS3.262115.12958K562UCHL5
chr1778127007812765+CDS,intron-Distal,intron-Proximal4.717446.99120K562AQR
chr1777940537794059+CDS3.712624.75336K562PUM1
chr1778023467802361+CDS4.013063.59941K562UCHL5
chr1777883257788402+CDS,intron-Proximal3.190275.03210K562ZNF800
chr1778065897806607+CDS,intron-Proximal3.703954.20387K562ZNF622
chr1778071847807254+CDS4.073585.89622K562FXR2
chr1778063497806379+CDS3.086923.73997K562ZNF622
chr1778024147802447+CDS4.598034.78571K562UCHL5
chr1777978277797882+CDS5.4862210.55688K562LIN28B
chr1777942567794332+CDS,intron-Proximal3.151198.08543K562PUM1
chr1777939037793993+CDS4.122854.29290K562TRA2A
chr1777940517794058+CDS4.450304.78571K562UCHL5
chr1777982787798316+CDS4.531834.10264K562ZNF622
chr1778004527800526+CDS4.6033510.74095K562UCHL5
chr1777881327788264+CDS4.2703611.68356K562PUM1
chr1777982757798361+CDS6.0586816.44087K562UCHL5
chr1777977537797829+CDS4.494809.48722K562UCHL5
chr1777982287798356+CDS,intron-Proximal3.649758.79498K562GRWD1
chr1778005647800608+CDS3.381555.39086K562UCHL5
chr1777881887788277+CDS3.488555.62184K562GRWD1
chr1777988307798857+CDS4.599804.42734K562UCHL5
chr1778063447806373+CDS4.086453.83824K562BUD13
chr1778032807803312+CDS3.229924.33023K562ZNF622
chr1778094807809498+intron-Distal5.53386400.00000HepG2DKC1
chr1778135967813691+intron-Distal,intron-Proximal4.194368.68720K562MATR3
chr1778093857809555+intron-Distal,intron-Proximal4.7237830.74103HepG2SMNDC1
chr1778095687809637+intron-Distal5.8712941.35179K562SMNDC1
chr1778131017813174+intron-Distal5.364129.83537HepG2PCBP2
chr1778094047809632+intron-Distal,intron-Proximal3.271084.13014K562ZC3H8
chr1778094337809503+intron-Distal4.185569.01453K562PTBP1
chr1778095097809562+intron-Distal5.5883824.43395HepG2SF3A3
chr1778131847813256+intron-Distal6.0600615.09171HepG2QKI
chr1778094317809509+intron-Distal4.3221140.63676HepG2SF3A3
chr1778095757809634+intron-Distal4.5771445.07855HepG2SF3A3
chr1778135337813601+intron-Distal5.3319622.12948K562PTBP1
chr1778095557809637+intron-Distal5.2269621.31821HepG2SMNDC1
chr1778094327809480+intron-Distal5.30716400.00000HepG2DKC1
chr1778095287809552+intron-Distal6.44601400.00000HepG2DKC1
chr1778136107813666+intron-Distal,intron-Proximal4.635779.54872HepG2PTBP1
chr1778095107809625+intron-Distal4.1685931.27554K562AATF
chr1778093917809423+intron-Distal,intron-Proximal4.7609928.25825HepG2NOLC1
chr1778134777813521+intron-Distal3.181374.38107K562AQR
chr1778095697809635+intron-Distal7.25475400.00000HepG2NOLC1
chr1778095767809620+intron-Distal3.7191010.86944HepG2PTBP1
chr1778134657813533+intron-Distal4.2248715.07775K562PTBP1
chr1778131977813248+intron-Distal6.3800611.26038K562QKI
chr1778095287809576+intron-Distal4.3688815.87218HepG2PTBP1
chr1778093917809434+intron-Distal,intron-Proximal3.591999.75271K562SMNDC1
chr1778095707809632+intron-Distal4.3636418.38562K562PTBP1
chr1778094967809568+intron-Distal4.6188124.29412K562SMNDC1
chr1778094047809426+intron-Distal,intron-Proximal5.6825624.67897HepG2DKC1
chr1778093897809431+intron-Distal,intron-Proximal3.257838.11173HepG2SF3A3
chr1778132487813350+intron-Distal5.6550119.96115K562QKI
chr1778136017813691+intron-Distal,intron-Proximal4.6974927.09693K562PTBP1
chr1778132567813371+intron-Distal6.7726827.34187HepG2QKI
chr1778094987809528+intron-Distal3.1890213.27890HepG2PTBP1
chr1778095717809630+intron-Distal6.66904400.00000HepG2DKC1
chr1778095037809570+intron-Distal3.6322811.70237K562PTBP1
chr1778134187813477+intron-Distal4.549858.69247K562AQR
chr1778095087809523+intron-Distal6.26362400.00000HepG2DKC1
chr1778094477809496+intron-Distal4.4637610.72196K562SMNDC1
chr1778094237809569+intron-Distal5.14711400.00000HepG2NOLC1
chr1778134907813596+intron-Distal3.504254.49882K562MATR3
chr1778130507813173+intron-Distal4.219714.33022HepG2HNRNPK
chr1778130987813227+intron-Distal4.796356.20726K562HNRNPK
chr1778134797813592+intron-Distal4.5680010.31417HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHD3 is not available on ENCORE database.

  • 91 RBPs can affect the levels of CHD3.  








The Knockdown/knockout RNA-Seq assay for CHD3 is not available on ENCORE database.





91 RBPs can affect the gene expression of CHD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHD3ENSG00000170004.12998.65400640.568800.640505.016203.78690HepG2ABCF1
CHD3ENSG00000170004.12306.57000449.36760-0.551703.478902.37290HepG2ADAR
CHD3ENSG00000170004.12900.18780672.873400.419802.607601.59810HepG2AKAP8
CHD3ENSG00000170004.12910.84120531.612300.7767012.4747011.00340HepG2AKAP8L
CHD3ENSG00000170004.121162.00920621.768700.9021020.1001018.55730HepG2AUH
CHD3ENSG00000170004.12916.76450637.559900.523905.700704.64700HepG2CALR
CHD3ENSG00000170004.121257.71870556.704901.1757020.8419019.17490HepG2CPSF6
CHD3ENSG00000170004.12480.50020698.41060-0.539505.621904.76680HepG2CELF1
CHD3ENSG00000170004.12937.84950750.902700.320603.723802.88480HepG2DAZAP1
CHD3ENSG00000170004.121418.30420908.029100.643305.445004.59320HepG2DDX3X
CHD3ENSG00000170004.12688.10430444.158300.631503.876902.97690HepG2DDX55
CHD3ENSG00000170004.121254.01880780.182500.684606.154505.26210HepG2DDX6
CHD3ENSG00000170004.12645.17220436.411300.563903.975902.81240HepG2DHX30
CHD3ENSG00000170004.12771.87460452.453400.7705010.897409.57840HepG2DNAJC21
CHD3ENSG00000170004.121336.20030749.842900.833409.977208.89150HepG2EIF2S1
CHD3ENSG00000170004.121071.76370828.584600.371202.176801.60670HepG2EIF4A3
CHD3ENSG00000170004.121279.56740740.863500.7883017.2878015.57360HepG2EIF4G1
CHD3ENSG00000170004.121025.66910709.690500.531202.199301.46740HepG2EIF4G2
CHD3ENSG00000170004.121842.00130713.903501.3674052.3283050.34060HepG2ETF1
CHD3ENSG00000170004.123082.33220557.639702.466509.078907.27380HepG2FTO
CHD3ENSG00000170004.121319.28840775.616400.766206.054205.08700HepG2G3BP1
CHD3ENSG00000170004.121221.71460631.093900.9529011.6822010.44410HepG2GPKOW
CHD3ENSG00000170004.12677.10930505.192100.422503.441302.36060HepG2HDGF
CHD3ENSG00000170004.12649.48340508.122200.354002.067001.45710HepG2HNRNPC
CHD3ENSG00000170004.12615.66130454.246400.438603.682602.86500HepG2HNRNPF
CHD3ENSG00000170004.121483.25450785.679200.9167013.8270012.38310HepG2HNRNPK
CHD3ENSG00000170004.12822.44940683.996700.265802.430901.79520HepG2HNRNPL
CHD3ENSG00000170004.12826.43100602.262200.456403.228702.55550HepG2HNRNPLL
CHD3ENSG00000170004.12789.57060504.760600.645408.129207.12920HepG2HNRNPU
CHD3ENSG00000170004.12669.44090447.298400.581605.287404.31890HepG2IGF2BP1
CHD3ENSG00000170004.121063.55330732.150800.538603.524402.11240HepG2KRR1
CHD3ENSG00000170004.12882.49610523.397500.753608.741907.37980HepG2MSI2
CHD3ENSG00000170004.121126.39450614.173400.874903.096402.06760HepG2MTPAP
CHD3ENSG00000170004.12728.07850439.518400.728107.791505.78510HepG2NAA15
CHD3ENSG00000170004.12979.24930744.596800.395103.961203.04830HepG2NOL12
CHD3ENSG00000170004.12641.96730407.936600.654102.633301.56850HepG2NONO
CHD3ENSG00000170004.121076.77430534.002101.0117014.6698013.09280HepG2NSUN2
CHD3ENSG00000170004.121405.53660766.600600.8745011.030809.61770HepG2PABPC4
CHD3ENSG00000170004.12500.36240721.44920-0.527904.632603.88170HepG2PCBP1
CHD3ENSG00000170004.12430.77650600.75970-0.479802.301201.35290HepG2PCBP2
CHD3ENSG00000170004.12571.01650450.201100.342902.466801.76650HepG2PPIL4
CHD3ENSG00000170004.12643.57040502.190800.357802.856502.07300HepG2PRPF4
CHD3ENSG00000170004.121339.80170710.799500.9144015.7926014.52520HepG2PUF60
CHD3ENSG00000170004.12522.22700754.56460-0.531006.815905.97020HepG2PUM1
CHD3ENSG00000170004.121027.23350754.001300.446004.644703.78650HepG2PUM2
CHD3ENSG00000170004.12360.47170539.05540-0.580503.224302.57150HepG2PUS1
CHD3ENSG00000170004.121182.99700794.987500.573307.618506.65980HepG2QKI
CHD3ENSG00000170004.12248.66350579.75900-1.221308.341807.16040HepG2RAVER1
CHD3ENSG00000170004.121205.22920713.813300.7556012.1008010.50550HepG2RBM15
CHD3ENSG00000170004.12899.49100489.403700.8780010.559809.37540HepG2RPLP0
CHD3ENSG00000170004.12829.57880569.478200.542602.947601.97510HepG2RPS10
CHD3ENSG00000170004.12593.10250434.917000.447403.163202.51240HepG2RPS19
CHD3ENSG00000170004.12838.92040576.854200.540203.264402.39740HepG2RPS3A
CHD3ENSG00000170004.12627.22660449.494700.480605.054104.23010HepG2SAFB2
CHD3ENSG00000170004.121067.96340663.299900.687004.419103.42180HepG2SNRNP70
CHD3ENSG00000170004.12565.46440446.298000.341302.305901.66610HepG2SRSF7
CHD3ENSG00000170004.12919.57460649.053700.502505.064704.35910HepG2SRSF9
CHD3ENSG00000170004.121400.02610585.105301.2586042.8405041.40370HepG2SSB
CHD3ENSG00000170004.121058.76360798.159000.407505.560104.73470HepG2SUCLG1
CHD3ENSG00000170004.12770.39210436.681600.8189010.078708.38880HepG2SUPT6H
CHD3ENSG00000170004.12890.23530717.174500.311802.781202.21970HepG2TAF15
CHD3ENSG00000170004.121078.70450586.951500.8779011.7506010.41410HepG2TARDBP
CHD3ENSG00000170004.121399.44470490.361101.5128028.4809027.18770HepG2TIAL1
CHD3ENSG00000170004.12901.87410553.250600.704906.535905.58550HepG2U2AF1
CHD3ENSG00000170004.121386.38080581.653701.253004.518203.24370HepG2U2AF2
CHD3ENSG00000170004.121027.94880735.088400.483703.441502.50650HepG2UBE2L3
CHD3ENSG00000170004.121892.26770788.818301.2623053.2433051.03970HepG2UPF1
CHD3ENSG00000170004.12598.30640404.785000.563602.551301.58980HepG2UPF2
CHD3ENSG00000170004.12599.64900761.57290-0.344902.931102.31770HepG2UTP3
CHD3ENSG00000170004.121118.01970867.549000.365805.077504.39220HepG2ZNF622
CHD3ENSG00000170004.121101.734501501.18570-0.446304.429802.89620K562AARS
CHD3ENSG00000170004.123407.337402549.334800.418409.228708.26900K562AGGF1
CHD3ENSG00000170004.123719.885202801.407500.409004.789203.40970K562AKAP8
CHD3ENSG00000170004.123788.852302652.716600.514207.173906.07950K562AKAP8L
CHD3ENSG00000170004.121450.326702639.85450-0.8641014.1477012.96510K562AQR
CHD3ENSG00000170004.121488.766201817.63950-0.287903.108901.69690K562BCCIP
CHD3ENSG00000170004.121418.417201756.37870-0.308303.985702.81750K562BCLAF1
CHD3ENSG00000170004.121905.376102418.78110-0.344202.921802.11640K562CPSF6
CHD3ENSG00000170004.121395.162601781.84640-0.352902.704001.80250K562EFTUD2
CHD3ENSG00000170004.121456.807401086.280500.423305.008203.95230K562EIF3G
CHD3ENSG00000170004.121294.056501595.16290-0.301802.252201.50950K562EIF4A3
CHD3ENSG00000170004.12872.313201274.71350-0.547303.878103.00770K562G3BP2
CHD3ENSG00000170004.122313.289703119.28980-0.431305.588604.51080K562GRSF1
CHD3ENSG00000170004.12926.188401642.95330-0.8269014.2098012.93960K562HNRNPC
CHD3ENSG00000170004.121341.070302014.45870-0.587004.652603.41600K562HNRNPM
CHD3ENSG00000170004.122100.131802519.49360-0.262702.925202.00710K562HNRNPU
CHD3ENSG00000170004.122345.127603320.72990-0.501806.112704.94120K562HSPD1
CHD3ENSG00000170004.123439.664702815.131600.289003.114102.23490K562KIF1C
CHD3ENSG00000170004.121578.190502254.21210-0.514404.314403.20510K562METAP2
CHD3ENSG00000170004.122996.465702210.498100.438803.120902.17540K562NAA15
CHD3ENSG00000170004.121347.785101755.52290-0.381302.818701.50790K562NONO
CHD3ENSG00000170004.122138.299002780.26250-0.378803.605302.64980K562PPIG
CHD3ENSG00000170004.121051.984401733.93980-0.720909.163007.79560K562PRPF8
CHD3ENSG00000170004.123221.956404132.34030-0.359003.922302.95550K562PUF60
CHD3ENSG00000170004.123482.712304395.62920-0.335904.399503.02750K562PUM1
CHD3ENSG00000170004.123494.565402630.637300.409604.443603.77830K562PUS1
CHD3ENSG00000170004.123793.809302563.267200.5656012.4171011.16430K562RBM15
CHD3ENSG00000170004.121115.804401644.75690-0.559804.260403.18950K562RBM22
CHD3ENSG00000170004.121052.523101766.26500-0.746808.185806.76560K562RPS19
CHD3ENSG00000170004.121531.092502034.64350-0.410203.466802.33650K562RPS3
CHD3ENSG00000170004.121301.569501772.93810-0.445902.733501.41340K562RRP9
CHD3ENSG00000170004.122570.668903066.67740-0.254503.031202.18010K562SF3A3
CHD3ENSG00000170004.122665.680803141.88980-0.237103.811502.73170K562SRPK2
CHD3ENSG00000170004.122639.563203295.20000-0.320105.650004.66330K562UPF1
CHD3ENSG00000170004.122039.524203033.40720-0.572705.798604.07240K562UTP3
CHD3ENSG00000170004.122285.345502819.58640-0.303103.003702.09390K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHD3 is not available on ENCORE database.





8 RBPs can affect the splicing of CHD3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECHD3ENSG00000170004.12chr17+781091878110207810670781080678112117811337-0.419000.000000.00001excludedK562SRSF1
SECHD3ENSG00000170004.12chr17+781091878110207810670781080678112117811337-0.477000.000000.00022excludedK562SF3B4
SECHD3ENSG00000170004.12chr17+781374578139097812460781265678141647814291-0.335000.002580.02709excludedK562AQR
SECHD3ENSG00000170004.12chr17+781091878110207810670781080678112117811337-0.318000.000010.00093excludedK562FXR1
SECHD3ENSG00000170004.12chr17+781091878110207810670781080678112117811337-0.547000.001960.09160excludedHepG2NCBP2
SECHD3ENSG00000170004.12chr17+781091878110207810670781080678112117811337-0.679000.000110.03659excludedHepG2EFTUD2
SECHD3ENSG00000170004.12chr17+781091878110207810670781080678112117811337-0.402000.000060.00229excludedHepG2SRSF1
SECHD3ENSG00000170004.12chr17+781091878110207810670781080678112117811337-0.426000.000120.00832excludedHepG2PCBP1
SECHD3ENSG00000170004.12chr17+781091878110207810670781080678112117811337-0.328000.001030.04726excludedHepG2SF3B4
SECHD3ENSG00000170004.12chr17+781091878110207810670781080678112117811452-0.305000.000810.03409excludedK562SF3B1
A5SSCHD3ENSG00000170004.12chr17+7808417780865578084177808483780893878090240.124000.000040.00110longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHD3 is not avaliable on ENCORE database.