CAPNS1

General Information

Gene Name       : CAPNS1
Gene ID             : ENSG00000126247.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CAPNS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CAPNS1ENSG00000126247.10231.25334.12282.69ENCSR000AEF
HepG2CAPNS1ENSG00000126247.10479.71315.62397.66ENCSR985KAT
K562CAPNS1ENSG00000126247.10425.26387.64406.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CAPNS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CAPNS1 RNA is bound by 22 proteins.  







eCLIP assay for CAPNS1 is not avaliable on ENCORE database.





22 proteins are bound to CAPNS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193664086236640905+3'-UTR,intron-Distal,intron-Proximal3.7523732.14546K562PABPC4
chr193664095336641031+3'-UTR,CDS,intron-Distal3.6726618.00910K562PCBP1
chr193664095036641025+3'-UTR,CDS,intron-Distal3.983029.97858HepG2UPF1
chr193664116036641229+3'-UTR,CDS,intron-Proximal4.178677.76216HepG2G3BP1
chr193664076536640836+3'-UTR,intron-Distal4.132058.14916K562PCBP1
chr193664087436641015+3'-UTR,CDS,intron-Distal,intron-Proximal3.647256.72681K562METAP2
chr193664104836641138+3'-UTR,intron-Distal,intron-Proximal3.458387.72032HepG2G3BP1
chr193664088436640950+3'-UTR,CDS,intron-Distal,intron-Proximal5.289729.25213HepG2UPF1
chr193664118936641228+3'-UTR,CDS,intron-Proximal3.413856.67761K562UPF1
chr193664095636641037+3'-UTR,CDS,intron-Distal5.286008.52511HepG2IGF2BP3
chr193664112336641188+3'-UTR,intron-Proximal3.688495.13933HepG2IGF2BP3
chr193664115336641234+3'-UTR,CDS,intron-Proximal3.9083551.65197K562PUM2
chr193664095036641037+3'-UTR,CDS,intron-Distal3.1435626.08770K562IGF2BP2
chr193664095736641027+3'-UTR,CDS,intron-Distal3.658285.59440HepG2HNRNPK
chr193664091336641008+3'-UTR,CDS,intron-Distal,intron-Proximal3.900146.07651HepG2PCBP1
chr193664102536641178+3'-UTR,intron-Distal,intron-Proximal4.1050015.93178HepG2UPF1
chr193664090636640956+3'-UTR,CDS,intron-Distal,intron-Proximal4.582615.60015HepG2IGF2BP3
chr193664118436641224+3'-UTR,CDS,intron-Proximal4.925963.81167HepG2SUB1
chr193664073236640770+3'-UTR,CDS,intron-Distal3.166556.66653HepG2LARP4
chr193664103136641127+3'-UTR,intron-Distal,intron-Proximal3.224895.25323HepG2PCBP1
chr193664105236641127+3'-UTR,intron-Distal,intron-Proximal3.495448.29139HepG2PCBP2
chr193664119236641230+3'-UTR,CDS,intron-Proximal3.6913526.03025K562PABPC4
chr193664082536640861+3'-UTR,intron-Distal,intron-Proximal3.194335.12117HepG2LARP4
chr193664074536640858+3'-UTR,intron-Distal,intron-Proximal4.109589.01415HepG2IGF2BP3
chr193664087736640953+3'-UTR,CDS,intron-Distal,intron-Proximal3.171057.80624K562PCBP1
chr193664094836641037+3'-UTR,CDS,intron-Distal3.1137612.44275HepG2IGF2BP1
chr193664107736641099+3'-UTR,intron-Distal3.1412011.03558K562IGF2BP2
chr193664076436640817+3'-UTR,intron-Distal3.7139234.46637K562PABPC4
chr193664103636641151+3'-UTR,intron-Distal,intron-Proximal3.3743817.03039HepG2DDX55
chr193664074636640839+3'-UTR,intron-Distal3.952928.52699HepG2UPF1
chr193664103136641109+3'-UTR,intron-Distal3.8888517.05188K562PCBP1
chr193664100836641176+3'-UTR,CDS,intron-Distal,intron-Proximal3.7891522.12605HepG2LARP4
chr193664091036640963+3'-UTR,CDS,intron-Distal,intron-Proximal3.622017.82548HepG2LARP4
chr193664118436641226+3'-UTR,CDS,intron-Proximal4.514678.59403HepG2LARP4
chr193663711736637142+3'-UTR,CDS,intron-Distal,intron-Proximal3.264897.24994K562YBX3
chr193664082436640862+3'-UTR,intron-Distal,intron-Proximal3.206365.57913K562PABPC4
chr193664097236641123+3'-UTR,CDS,intron-Distal,intron-Proximal3.3239337.95136K562PABPC4
chr193664077036640825+3'-UTR,intron-Distal3.8033812.45146HepG2LARP4
chr193664086436640910+3'-UTR,intron-Distal,intron-Proximal3.248628.54359K562IGF2BP1
chr193664096336641008+3'-UTR,CDS,intron-Distal4.748278.30751HepG2LARP4
chr193664104836641141+3'-UTR,intron-Distal,intron-Proximal3.831126.22802K562HNRNPK
chr193663381036633832+5'-UTR,CDS,intron-Distal,intron-Proximal4.645964.96722HepG2G3BP1
chr193663097336631061+5'-UTR,intron-Proximal5.6201413.15062HepG2DDX3X
chr193663320036633221+5'-UTR,CDS,intron-Distal,intron-Proximal4.6647327.14892K562YBX3
chr193663189636631918+5'-UTR,CDS,intron-Proximal4.719326.15796HepG2DDX3X
chr193663189636631936+5'-UTR,CDS,intron-Proximal4.2664019.06044K562DDX3X
chr193663121536631269+5'-UTR,intron-Distal,intron-Proximal3.769123.06617K562HNRNPK
chr193663323236633235+5'-UTR,CDS,intron-Distal4.467564.95438K562YBX3
chr193663356636633643+5'-UTR,CDS,intron-Distal,intron-Proximal5.6885913.45975HepG2G3BP1
chr193663355336633566+5'-UTR,CDS,intron-Distal,intron-Proximal4.098433.88780HepG2G3BP1
chr193663098736631060+5'-UTR,intron-Proximal4.1208914.94047K562DDX3X
chr193663322136633227+5'-UTR,CDS,intron-Distal3.609265.00846K562YBX3
chr193663358436633642+5'-UTR,CDS,intron-Distal,intron-Proximal3.9575416.81236K562PABPC4
chr193663355336633559+5'-UTR,CDS,intron-Distal,intron-Proximal4.506575.13745K562YBX3
chr193663381036633834+5'-UTR,CDS,intron-Distal,intron-Proximal3.354963.86355HepG2PPIG
chr193663355336633617+5'-UTR,CDS,intron-Distal,intron-Proximal4.086925.79513HepG2SUB1
chr193663210636632117+CDS,intron-Distal4.4459323.23964K562YBX3
chr193663714236637165+CDS,intron-Distal,intron-Proximal3.764088.67507K562YBX3
chr193663198936632054+CDS,intron-Proximal4.105666.82143HepG2G3BP1
chr193663719336637261+CDS,intron-Distal,intron-Proximal3.715806.34662HepG2PRPF8
chr193663200336632080+CDS,intron-Distal,intron-Proximal3.6756625.36063K562GEMIN5
chr193664068236640725+CDS,intron-Distal,intron-Proximal5.159486.47067K562SF3B4
chr193664067336640714+CDS,intron-Distal,intron-Proximal5.995459.59560HepG2SF3A3
chr193664061336640721+CDS,intron-Distal,intron-Proximal4.258534.82767HepG2SF3B4
chr193663716636637215+CDS,intron-Distal,intron-Proximal3.9712921.95924K562YBX3
chr193663206736632108+CDS,intron-Distal,intron-Proximal4.839705.48383HepG2LARP4
chr193663205436632120+CDS,intron-Distal,intron-Proximal3.395377.98704HepG2G3BP1
chr193664047936640494+CDS,intron-Distal,intron-Proximal4.0394111.93078K562YBX3
chr193664065636640682+CDS,intron-Distal,intron-Proximal5.137955.40008K562SF3B4
chr193663211736632122+CDS,intron-Distal4.3602321.29663K562YBX3
chr193664063036640656+CDS,intron-Distal,intron-Proximal4.654163.91589K562SF3B4
chr193663671436636767+CDS,intron-Distal3.803165.97760HepG2G3BP1
chr193663197736632003+CDS,intron-Proximal3.9179820.60854K562GEMIN5
chr193663207236632119+CDS,intron-Distal,intron-Proximal3.0415210.10102K562PABPC4
chr193663700836637089+intron-Distal,intron-Proximal5.025907.30117HepG2SF3B4
chr193663700736637083+intron-Distal,intron-Proximal4.8616810.52912K562SF3B4
chr193663699736637065+intron-Distal,intron-Proximal4.600587.58326K562EFTUD2
chr193663699736637093+intron-Distal,intron-Proximal5.349315.16714HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CAPNS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CAPNS1 is not available on ENCORE database.

  • 99 RBPs can affect the levels of CAPNS1.  








The Knockdown/knockout RNA-Seq assay for CAPNS1 is not available on ENCORE database.





99 RBPs can affect the gene expression of CAPNS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CAPNS1ENSG00000126247.64309.450602979.020200.5326017.0413015.80400HepG2ACO1
CAPNS1ENSG00000126247.65673.658204457.868300.347802.435101.93270HepG2AKAP1
CAPNS1ENSG00000126247.65464.161503775.193800.533305.211103.79590HepG2AKAP8
CAPNS1ENSG00000126247.63492.625802992.747300.222702.890402.10750HepG2AKAP8L
CAPNS1ENSG00000126247.64519.968803688.396300.293202.140001.44530HepG2ASCC1
CAPNS1ENSG00000126247.63609.670504289.98880-0.249103.692902.92080HepG2AUH
CAPNS1ENSG00000126247.63347.775204503.54280-0.427905.030004.25430HepG2BOP1
CAPNS1ENSG00000126247.64325.948803504.267700.303802.370801.65020HepG2CIRBP
CAPNS1ENSG00000126247.62655.284602978.04910-0.165502.159001.56060HepG2CKAP4
CAPNS1ENSG00000126247.62423.673702927.66190-0.272603.173602.08210HepG2YBX3
CAPNS1ENSG00000126247.61277.134201727.72400-0.436004.420303.09380HepG2CSTF2
CAPNS1ENSG00000126247.66260.864404146.287400.594405.628004.77250HepG2CELF1
CAPNS1ENSG00000126247.64014.203304458.06560-0.151302.035101.38480HepG2DAZAP1
CAPNS1ENSG00000126247.63404.702202755.018100.305406.018704.85510HepG2DDX19B
CAPNS1ENSG00000126247.63090.817604270.05290-0.466304.517603.73320HepG2DDX3X
CAPNS1ENSG00000126247.63968.133002750.610200.528604.488103.52770HepG2DDX55
CAPNS1ENSG00000126247.62286.272202772.68360-0.278302.338501.43900HepG2DHX30
CAPNS1ENSG00000126247.63646.087902874.735800.342805.375204.42360HepG2DNAJC21
CAPNS1ENSG00000126247.63226.046602849.363700.179002.569501.93710HepG2DNAJC2
CAPNS1ENSG00000126247.63849.423202944.107100.386703.566102.52740HepG2EEF2
CAPNS1ENSG00000126247.63122.883402389.832700.385903.409202.41190HepG2EIF3D
CAPNS1ENSG00000126247.62794.123303896.56390-0.479804.164303.38460HepG2EIF4A3
CAPNS1ENSG00000126247.63327.642904213.29310-0.340403.095902.23680HepG2EIF4G2
CAPNS1ENSG00000126247.63929.322804925.66030-0.326004.945004.18270HepG2ETF1
CAPNS1ENSG00000126247.63577.981102910.747700.297702.963602.10230HepG2EWSR1
CAPNS1ENSG00000126247.66884.990005251.929700.390502.425901.70150HepG2FIP1L1
CAPNS1ENSG00000126247.62188.805904141.58870-0.920004.806603.47290HepG2FTO
CAPNS1ENSG00000126247.62795.384703647.35490-0.383803.003802.31200HepG2G3BP1
CAPNS1ENSG00000126247.65190.394004097.191900.341106.802205.44910HepG2HNRNPA2B1
CAPNS1ENSG00000126247.61583.447703694.31800-1.2222030.4730028.42860HepG2HNRNPK
CAPNS1ENSG00000126247.63674.386003206.906900.196202.593702.00740HepG2HNRNPU
CAPNS1ENSG00000126247.64621.565303707.298000.317902.554201.90310HepG2IGF2BP2
CAPNS1ENSG00000126247.63622.895903275.748500.145202.166401.50850HepG2ILF2
CAPNS1ENSG00000126247.62831.394303729.20480-0.397402.576001.61380HepG2KHSRP
CAPNS1ENSG00000126247.63055.648202722.996700.166202.235401.31710HepG2KIF1C
CAPNS1ENSG00000126247.63218.782603933.69370-0.289401.982201.42260HepG2MAGOH
CAPNS1ENSG00000126247.61933.981703955.57230-1.0323016.7678015.31550HepG2MATR3
CAPNS1ENSG00000126247.63037.751203965.87830-0.384603.803802.92940HepG2NSUN2
CAPNS1ENSG00000126247.62528.836303605.05970-0.511505.172604.19770HepG2PABPC4
CAPNS1ENSG00000126247.62450.904203817.56650-0.6393020.4272019.02530HepG2PCBP1
CAPNS1ENSG00000126247.62400.650601976.355000.280502.863101.61080HepG2PKM
CAPNS1ENSG00000126247.63480.810504116.17040-0.241903.474402.61770HepG2PRPF4
CAPNS1ENSG00000126247.61102.150102121.35660-0.9447015.2950013.61460HepG2PRPF8
CAPNS1ENSG00000126247.62743.827204207.11440-0.6166014.3633013.09630HepG2QKI
CAPNS1ENSG00000126247.63630.672304323.07080-0.251803.927203.30360HepG2NELFE
CAPNS1ENSG00000126247.63188.591704026.22800-0.336506.577705.68510HepG2RECQL
CAPNS1ENSG00000126247.62779.990502325.544800.257402.220301.66300HepG2RPS19
CAPNS1ENSG00000126247.62878.747402333.837100.302602.419001.53750HepG2SERBP1
CAPNS1ENSG00000126247.65456.581604019.723100.440803.098202.38430HepG2SF3A3
CAPNS1ENSG00000126247.63564.070104427.04550-0.312802.808602.09670HepG2SF3B1
CAPNS1ENSG00000126247.62837.286704044.34560-0.5114013.6916012.53200HepG2SF3B4
CAPNS1ENSG00000126247.63596.687404046.39260-0.170002.376601.71970HepG2SLBP
CAPNS1ENSG00000126247.64489.471003330.446000.4307014.8266013.52200HepG2SMN1
CAPNS1ENSG00000126247.64058.899602203.476200.881202.980201.60600HepG2SNRNP200
CAPNS1ENSG00000126247.65160.283304649.824700.150201.738501.31280HepG2SRFBP1
CAPNS1ENSG00000126247.66374.597604763.534400.420203.139502.06370HepG2SRSF3
CAPNS1ENSG00000126247.64182.030204775.63830-0.191502.802802.10270HepG2SRSF7
CAPNS1ENSG00000126247.62697.445503434.24940-0.348407.150006.33770HepG2SRSF9
CAPNS1ENSG00000126247.61706.410204037.03340-1.2423073.3116071.59090HepG2SSB
CAPNS1ENSG00000126247.63869.288304738.55340-0.292406.322605.45270HepG2SUCLG1
CAPNS1ENSG00000126247.64425.859502738.040100.692708.021306.96580HepG2SUPV3L1
CAPNS1ENSG00000126247.62576.924703794.15510-0.5581012.4779011.41600HepG2TAF15
CAPNS1ENSG00000126247.63599.279104491.85680-0.319603.094802.43240HepG2U2AF1
CAPNS1ENSG00000126247.64528.031402565.039800.819802.405801.49440HepG2U2AF2
CAPNS1ENSG00000126247.64422.761403564.877900.311006.282105.29930HepG2UPF1
CAPNS1ENSG00000126247.64349.140303664.210200.247103.480402.31980HepG2UTP18
CAPNS1ENSG00000126247.66218.448803920.686000.6653035.8977034.50550HepG2ZNF622
CAPNS1ENSG00000126247.61864.894802616.55780-0.488603.383801.94030HepG2ZRANB2
CAPNS1ENSG00000126247.65794.059304439.124900.384208.853007.91310K562AGGF1
CAPNS1ENSG00000126247.67042.541204877.726100.529807.727505.85950K562AKAP8
CAPNS1ENSG00000126247.65928.001204619.061200.359802.840402.17850K562AKAP8L
CAPNS1ENSG00000126247.62335.953904263.58290-0.8681016.8884015.59960K562AQR
CAPNS1ENSG00000126247.65748.343804846.413600.246102.258401.44090K562ATP5C1
CAPNS1ENSG00000126247.62187.117302770.85590-0.341304.776103.49670K562BCLAF1
CAPNS1ENSG00000126247.63218.211804524.25330-0.491402.981102.07410K562BOP1
CAPNS1ENSG00000126247.63948.061804810.64090-0.285103.049402.22750K562CPSF6
CAPNS1ENSG00000126247.61539.104202102.10780-0.449706.875805.09650K562CSTF2
CAPNS1ENSG00000126247.65964.829107403.97880-0.311804.212203.00100K562CELF1
CAPNS1ENSG00000126247.62569.258302171.585800.242502.560701.31560K562DDX6
CAPNS1ENSG00000126247.65724.170004970.750900.203502.363001.56240K562DKC1
CAPNS1ENSG00000126247.61624.405102520.84620-0.634008.697906.99520K562EFTUD2
CAPNS1ENSG00000126247.62208.474201659.686800.412005.929604.77820K562EIF3G
CAPNS1ENSG00000126247.63388.558304627.36540-0.449503.388201.55000K562ESF1
CAPNS1ENSG00000126247.62391.376001953.374800.291803.187201.78090K562EWSR1
CAPNS1ENSG00000126247.66175.823404352.041700.504806.799305.42310K562FIP1L1
CAPNS1ENSG00000126247.63368.563904148.55790-0.300502.291501.46400K562FTO
CAPNS1ENSG00000126247.6865.889401538.77410-0.829504.407403.47070K562G3BP2
CAPNS1ENSG00000126247.64580.915205401.48040-0.237702.299401.60700K562GRSF1
CAPNS1ENSG00000126247.63196.618403982.88600-0.317303.433402.23310K562HNRNPA1
CAPNS1ENSG00000126247.62599.465703563.56270-0.455106.260805.39790K562HNRNPC
CAPNS1ENSG00000126247.61164.582202312.86650-0.989906.381404.44510K562HNRNPK
CAPNS1ENSG00000126247.64659.968103579.590700.380402.859601.91140K562HNRNPM
CAPNS1ENSG00000126247.63796.138804410.88690-0.216502.332401.51140K562HNRNPU
CAPNS1ENSG00000126247.63943.558903177.693400.311403.144001.48780K562LSM11
CAPNS1ENSG00000126247.65869.221704692.424900.322703.182702.00600K562MAK16
CAPNS1ENSG00000126247.63505.985504577.43270-0.384708.903007.53010K562MTPAP
CAPNS1ENSG00000126247.65009.255903849.215500.379902.477501.65390K562NAA15
CAPNS1ENSG00000126247.64513.113805086.05180-0.172403.532202.69980K562NSUN2
CAPNS1ENSG00000126247.66239.334102891.770401.109307.518605.61520K562PABPN1
CAPNS1ENSG00000126247.61346.537302165.58680-0.685503.744502.60740K562PCBP2
CAPNS1ENSG00000126247.64442.484403479.183600.352503.734302.03400K562PHF6
CAPNS1ENSG00000126247.65171.239206187.30960-0.258802.913201.43610K562PNPT1
CAPNS1ENSG00000126247.63482.320304144.86910-0.251302.655301.87270K562POLR2G
CAPNS1ENSG00000126247.61789.408102453.08740-0.455104.768503.78770K562PRPF8
CAPNS1ENSG00000126247.65027.043806569.93550-0.386204.465803.43450K562PUF60
CAPNS1ENSG00000126247.67719.241604581.195500.752602.894002.34100K562PUS1
CAPNS1ENSG00000126247.66396.240504463.391300.519007.529106.58070K562RBM15
CAPNS1ENSG00000126247.61880.640302498.35140-0.409803.262202.37330K562RPS19
CAPNS1ENSG00000126247.62894.345604367.95270-0.593706.540905.01050K562SF3B1
CAPNS1ENSG00000126247.62430.705403074.47280-0.339002.902601.60770K562SLBP
CAPNS1ENSG00000126247.63584.325702763.528400.375103.974902.67400K562SRFBP1
CAPNS1ENSG00000126247.64210.401005141.51260-0.288206.694605.30880K562SRPK2
CAPNS1ENSG00000126247.61586.453802318.93940-0.547702.613601.92410K562SRSF1
CAPNS1ENSG00000126247.65150.822804157.566900.309003.809702.84450K562SYNCRIP
CAPNS1ENSG00000126247.61101.800301539.38260-0.482502.691401.89830K562U2AF2
CAPNS1ENSG00000126247.63565.092604798.44130-0.4286012.2601010.63260K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CAPNS1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CAPNS1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CAPNS1 is not avaliable on ENCORE database.