C9orf3

General Information

Gene Name       : C9orf3
Gene ID             : ENSG00000148120.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C9orf3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C9orf3ENSG00000148120.164.114.814.46ENCSR000AEF
HepG2C9orf3ENSG00000148120.1618.4618.6218.54ENCSR985KAT
K562C9orf3ENSG00000148120.166.526.106.31ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C9orf3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C9orf3 RNA is bound by 43 proteins.  







eCLIP assay for C9orf3 is not avaliable on ENCORE database.





43 proteins are bound to C9orf3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr99784544597845500+3'-UTR,intron-Distal5.0730232.18388HepG2AGGF1
chr99784592697846013+3'-UTR,intron-Distal5.8827327.40181K562AGGF1
chr99784586697845876+3'-UTR,intron-Distal3.841856.99796HepG2HNRNPL
chr99784825197848258+3'-UTR,intron-Distal6.9461434.31958HepG2DGCR8
chr99784830797848327+3'-UTR,intron-Distal5.691659.43880K562DGCR8
chr99784569897845748+3'-UTR,intron-Distal5.004225.40092HepG2CDC40
chr99784898697849085+3'-UTR3.567327.52317HepG2GRWD1
chr99784821997848309+3'-UTR,intron-Distal3.824993.80990HepG2SRSF1
chr99784578997845835+3'-UTR,intron-Distal5.6033411.61214K562AGGF1
chr99784827097848313+3'-UTR,intron-Distal6.9993736.08818HepG2DROSHA
chr99784572697845773+3'-UTR,intron-Distal5.8652710.14519HepG2XPO5
chr99784584097845992+3'-UTR,intron-Distal5.0015649.25530HepG2XPO5
chr99784584197845930+3'-UTR,intron-Distal3.7642533.07786HepG2AGGF1
chr99784821597848253+3'-UTR,intron-Distal3.312793.38970HepG2CDC40
chr99784584297845866+3'-UTR,intron-Distal3.486617.17341HepG2HNRNPL
chr99784832797848369+3'-UTR,intron-Distal8.4483079.73008K562DGCR8
chr99784555797845613+3'-UTR,intron-Distal5.7747612.17576K562AGGF1
chr99784570997845752+3'-UTR,intron-Distal4.038709.71848K562AGGF1
chr99784550097845537+3'-UTR,intron-Distal4.2210315.38955HepG2AGGF1
chr99784308197843150+3'-UTR,CDS,intron-Proximal3.579275.69108HepG2RBM22
chr99784587797845989+3'-UTR,intron-Distal3.221613.20628K562HNRNPL
chr99784593197846043+3'-UTR,intron-Distal6.3819018.38816HepG2GTF2F1
chr99784820197848270+3'-UTR,intron-Distal,intron-Proximal6.6236164.45350HepG2DROSHA
chr99784540797845431+3'-UTR,intron-Distal3.980699.82780HepG2AGGF1
chr99784819997848250+3'-UTR,intron-Distal,intron-Proximal6.0305512.49422K562DGCR8
chr99784821797848251+3'-UTR,intron-Distal6.6142569.06506HepG2DGCR8
chr99784833497848370+3'-UTR,intron-Distal9.51036143.46956HepG2DGCR8
chr99784530497845375+3'-UTR,intron-Distal4.6639310.58349HepG2GTF2F1
chr99784898597849058+3'-UTR4.492723.08156HepG2SRSF7
chr99784517397845210+3'-UTR,intron-Distal4.1369012.93569HepG2AGGF1
chr99784572297845780+3'-UTR,intron-Distal3.6080612.46641HepG2AGGF1
chr99784818697848251+3'-UTR,intron-Distal,intron-Proximal3.198125.97392HepG2U2AF2
chr99784532497845384+3'-UTR,intron-Distal5.554807.88608K562AGGF1
chr99784305397843133+3'-UTR,CDS,intron-Proximal3.400195.84601HepG2PRPF8
chr99784534997845374+3'-UTR,intron-Distal4.7592511.17911HepG2DROSHA
chr99784545797845494+3'-UTR,intron-Distal5.583028.80074K562AGGF1
chr99784830097848333+3'-UTR,intron-Distal6.5680741.79483HepG2DGCR8
chr99784889797848975+3'-UTR,intron-Proximal4.182538.71432HepG2SF3B4
chr99784820497848217+3'-UTR,intron-Distal,intron-Proximal6.2213747.82744HepG2DGCR8
chr99784578397845842+3'-UTR,intron-Distal3.325514.25826HepG2HNRNPL
chr99784891197848966+3'-UTR,intron-Proximal5.7644020.38507HepG2SF3A3
chr99784587697845926+3'-UTR,intron-Distal3.8686115.54156HepG2HNRNPL
chr99784575297845783+3'-UTR,intron-Distal3.194315.73563HepG2HNRNPL
chr99784504797845120+3'-UTR,intron-Distal,intron-Proximal4.037523.55640HepG2QKI
chr99784592697845944+3'-UTR,intron-Distal3.115637.01360HepG2HNRNPL
chr99784583597845926+3'-UTR,intron-Distal7.1454535.30917K562AGGF1
chr99784544997845502+3'-UTR,intron-Distal5.4655511.07312HepG2GTF2F1
chr99784566997845722+3'-UTR,intron-Distal4.5999913.06797HepG2AGGF1
chr99784819997848254+3'-UTR,intron-Distal,intron-Proximal4.954216.14250K562DROSHA
chr99784578097845841+3'-UTR,intron-Distal4.1831913.29363HepG2AGGF1
chr99784585097845967+3'-UTR,intron-Distal5.2422713.82244HepG2CDC40
chr99784530397845393+3'-UTR,intron-Distal4.2990323.49275HepG2AGGF1
chr99784585997845931+3'-UTR,intron-Distal4.9341811.11377HepG2GTF2F1
chr99784571797845752+3'-UTR,intron-Distal3.223686.24785HepG2HNRNPL
chr99784585597845939+3'-UTR,intron-Distal3.994074.27920HepG2YBX3
chr99784895297848969+3'-UTR,intron-Proximal4.4655410.50484HepG2DROSHA
chr99784908997849157+3'-UTR3.540824.51056HepG2LSM11
chr99784593097845942+3'-UTR,intron-Distal3.5033016.17524HepG2AGGF1
chr99782298297823071+CDS,intron-Distal3.8924512.30450HepG2GRWD1
chr99782306697823112+CDS,intron-Distal,intron-Proximal3.547298.81096HepG2PPIG
chr99782306297823137+CDS,intron-Distal,intron-Proximal3.411758.26398HepG2BUD13
chr99776746997767512+CDS,intron-Distal,intron-Proximal3.9524621.23054HepG2BUD13
chr99782293897823062+CDS,intron-Distal,intron-Proximal3.012009.04391HepG2BUD13
chr99752220297522336+CDS5.266626.04243HepG2BCLAF1
chr99776782697767862+CDS3.223948.00887HepG2SRSF1
chr99776786297767928+CDS,intron-Proximal5.5528013.20703HepG2SRSF1
chr99776782997767863+CDS3.3601116.19203HepG2PPIG
chr99782295597823050+CDS,intron-Distal,intron-Proximal3.4072211.80824HepG2U2AF2
chr99776739897767556+CDS,intron-Distal,intron-Proximal4.3638834.59261HepG2EFTUD2
chr99753540397535453+CDS,intron-Proximal3.673843.57857HepG2BCLAF1
chr99776748697767547+CDS,intron-Distal,intron-Proximal3.033765.29557HepG2AQR
chr99776744797767505+CDS,intron-Distal,intron-Proximal3.683663.46665HepG2XRN2
chr99782307297823140+CDS,intron-Distal,intron-Proximal3.2577211.97638HepG2PRPF8
chr99776738897767469+CDS,intron-Distal,intron-Proximal3.7096022.78317HepG2BUD13
chr99776747797767503+CDS,intron-Distal,intron-Proximal3.6030517.20530HepG2PPIG
chr99784303597843096+CDS,intron-Proximal4.094934.21542HepG2SRSF1
chr99776746497767513+CDS,intron-Distal,intron-Proximal3.6261427.16366HepG2PRPF8
chr99784292797843009+CDS,intron-Proximal4.0024610.48915HepG2BUD13
chr99776789397767945+CDS,intron-Proximal3.022328.90039HepG2PRPF8
chr99776786397767883+CDS3.0914211.06801HepG2PPIG
chr99776727097767348+CDS,intron-Distal,intron-Proximal4.981217.20664HepG2NCBP2
chr99776727497767347+CDS,intron-Distal,intron-Proximal4.0438110.43313HepG2DDX3X
chr99755504897555095+CDS4.422593.89826HepG2BCLAF1
chr99784734597847365+intron-Distal5.7465927.91871HepG2DGCR8
chr99784813997848177+intron-Distal,intron-Proximal8.56690118.56705HepG2DGCR8
chr99784750297847507+intron-Distal6.5580826.85718HepG2DGCR8
chr99780584397805905+intron-Distal4.739656.12104HepG2QKI
chr99784789097847949+intron-Distal7.22134166.68647HepG2DGCR8
chr99782726297827332+intron-Distal4.667035.72853HepG2HNRNPM
chr99784661997846706+intron-Distal6.2355041.36656HepG2DROSHA
chr99784748597847502+intron-Distal7.3654945.78802HepG2DGCR8
chr99776768097767748+intron-Distal,intron-Proximal3.328537.55915HepG2SF3B4
chr99784770797847723+intron-Distal8.4321478.94874HepG2DGCR8
chr99784728097847306+intron-Distal4.8865320.97463HepG2DGCR8
chr99779281197792891+intron-Distal3.494925.72132HepG2HNRNPM
chr99777062397770669+intron-Distal3.310349.23457HepG2HNRNPC
chr99776706297767126+intron-Distal5.1930717.55120HepG2NKRF
chr99784600497846033+intron-Distal3.554816.46728HepG2AGGF1
chr99784689897846927+intron-Distal5.1340924.40443HepG2DGCR8
chr99784609997846183+intron-Distal5.8108610.16517K562AGGF1
chr99776920097769275+intron-Distal3.465163.85440HepG2HNRNPC
chr99784790397847968+intron-Distal6.2178917.11472K562DGCR8
chr99784682297846834+intron-Distal4.8866615.33176HepG2DGCR8
chr99784750797847523+intron-Distal7.5740544.66202HepG2DGCR8
chr99776669897766754+intron-Distal4.5592020.62738HepG2XPO5
chr99777060697770623+intron-Distal3.195935.83663HepG2HNRNPC
chr99784772397847737+intron-Distal8.3687773.64168HepG2DGCR8
chr99784844097848499+intron-Distal,intron-Proximal7.7241459.34998HepG2DGCR8
chr99756599897566104+intron-Distal5.157257.43163HepG2QKI
chr99784786297847971+intron-Distal3.6127011.04080HepG2FKBP4
chr99781073797810799+intron-Distal4.007747.23771HepG2CSTF2T
chr99784868097848729+intron-Distal6.2384060.50847HepG2DROSHA
chr99777044297770540+intron-Distal3.145934.09677HepG2CSTF2
chr99784776497847809+intron-Distal8.7715891.21916HepG2DGCR8
chr99784471697844748+intron-Distal4.547396.30068HepG2RBM5
chr99777045097770521+intron-Distal3.0751413.81879HepG2U2AF2
chr99776684797766944+intron-Distal3.112874.98353HepG2CSTF2T
chr99784713697847170+intron-Distal6.3929240.13395HepG2DGCR8
chr99779285697792919+intron-Distal3.465754.33009HepG2SUGP2
chr99784787097847967+intron-Distal3.478296.94545HepG2KHSRP
chr99779058397790680+intron-Distal3.7976811.60569HepG2HNRNPM
chr99784860597848680+intron-Distal6.6599249.35519HepG2DROSHA
chr99784683497846865+intron-Distal5.9876724.48543HepG2DGCR8
chr99778041397780472+intron-Distal5.4824110.77450HepG2HNRNPM
chr99784713797847189+intron-Distal7.4694853.10558HepG2DROSHA
chr99784610597846156+intron-Distal3.866605.28409HepG2GTF2F1
chr99780200397802095+intron-Distal4.572109.55185HepG2HNRNPL
chr99784670697846738+intron-Distal5.1066617.82801HepG2DROSHA
chr99784699997847090+intron-Distal6.0322869.30463HepG2DROSHA
chr99784662797846713+intron-Distal4.188505.21493HepG2CSTF2
chr99782089497820972+intron-Distal4.5602910.82907HepG2HNRNPM
chr99783216997832240+intron-Distal3.785396.82524HepG2QKI
chr99784681997846873+intron-Distal4.7325820.83729HepG2DROSHA
chr99784793397847947+intron-Distal6.1382733.17860HepG2DROSHA
chr99782080397820873+intron-Distal4.209697.43424HepG2HNRNPM
chr99784742097847510+intron-Distal5.9850254.63416HepG2DROSHA
chr99784695497847090+intron-Distal3.9057112.32413HepG2HNRNPK
chr99784610797846146+intron-Distal6.5322320.72495HepG2AGGF1
chr99784784297847863+intron-Distal5.2402914.83093HepG2DROSHA
chr99784727997847304+intron-Distal4.9932720.77166HepG2DROSHA
chr99778042097780463+intron-Distal3.754834.81844HepG2SUGP2
chr99779211697792183+intron-Distal3.485378.41828HepG2HNRNPM
chr99778098697781038+intron-Distal3.036024.23155HepG2MATR3
chr99784710797847135+intron-Distal4.782846.04484K562DGCR8
chr99778959497789662+intron-Distal4.157275.45333HepG2CSTF2
chr99778827897788329+intron-Distal4.6005710.61789HepG2RBFOX2
chr99784846997848499+intron-Distal,intron-Proximal5.9247214.91269HepG2DROSHA
chr99777113497771189+intron-Distal3.509675.19836HepG2U2AF2
chr99784770397847753+intron-Distal5.4256222.60759HepG2DROSHA
chr99784868497848766+intron-Distal7.0646195.06866HepG2DGCR8
chr99784766897847705+intron-Distal6.1655029.09703HepG2DGCR8
chr99784694897846959+intron-Distal4.9284515.86011HepG2DGCR8
chr99784666897846691+intron-Distal6.7464826.57011HepG2DGCR8
chr99778858897788677+intron-Distal3.345483.93724HepG2HNRNPK
chr99784851197848605+intron-Distal6.4022843.43510HepG2DROSHA
chr99777426297774322+intron-Distal3.502696.46897HepG2HNRNPL
chr99784790197847959+intron-Distal3.187683.93230HepG2U2AF1
chr99779124897791302+intron-Distal3.9943716.74139HepG2HNRNPM
chr99776900597769079+intron-Distal3.657925.28337HepG2HNRNPM
chr99784801097848047+intron-Distal6.1361141.48997HepG2DGCR8
chr99778530397785350+intron-Distal3.711163.15106HepG2HNRNPC
chr99784794997847987+intron-Distal6.66790104.60685HepG2DGCR8
chr99768002897680111+intron-Distal4.935107.45191HepG2PTBP1
chr99776736697767431+intron-Distal,intron-Proximal4.922344.49762HepG2XRN2
chr99777722897777341+intron-Distal3.012684.07300HepG2HNRNPL
chr99784786397847890+intron-Distal5.8330224.08402HepG2DROSHA
chr99784816797848199+intron-Distal,intron-Proximal5.458099.43880K562DGCR8
chr99784862297848668+intron-Distal6.1251053.62698HepG2DGCR8
chr99784736497847396+intron-Distal6.3116537.86320HepG2DROSHA
chr99779136797791414+intron-Distal3.9380812.41622HepG2HNRNPM
chr99784709597847137+intron-Distal6.7248964.65241HepG2DROSHA
chr99784695997846985+intron-Distal4.6120917.01858HepG2DGCR8
chr99784730697847345+intron-Distal6.8325249.80442HepG2DGCR8
chr99776706597767132+intron-Distal4.651514.68055HepG2CSTF2T
chr99784718997847230+intron-Distal5.4956026.21821HepG2DROSHA
chr99776764597767723+intron-Distal4.3652712.86851HepG2XPO5
chr99784876697848790+intron-Distal5.8673826.94510HepG2DGCR8
chr99782885197828927+intron-Distal3.154353.69184HepG2SUGP2
chr99768014397680263+intron-Distal5.2804410.20560HepG2PTBP1
chr99776751397767551+intron-Distal,intron-Proximal4.7766422.46178HepG2PRPF8
chr99784780997847811+intron-Distal6.4687221.09405HepG2DGCR8
chr99776736997767420+intron-Distal,intron-Proximal3.6140411.13244HepG2PRPF8
chr99781072497810805+intron-Distal4.673476.58205HepG2PRPF4
chr99784599497846041+intron-Distal3.317394.89630HepG2HNRNPL
chr99784784197847895+intron-Distal6.083677.64819K562DROSHA
chr99784733497847364+intron-Distal5.9306448.33661HepG2DROSHA
chr99784752197847572+intron-Distal6.7544926.42757K562DGCR8
chr99784694197846997+intron-Distal4.8413123.08337HepG2DROSHA
chr99784841897848503+intron-Distal,intron-Proximal4.492826.04613HepG2U2AF1
chr99782595797826040+intron-Distal3.995656.29995HepG2HNRNPM
chr99778088797780965+intron-Distal3.1078910.66639HepG2SUGP2
chr99784872997848799+intron-Distal6.2838962.61344HepG2DROSHA
chr99784664997846668+intron-Distal5.3178625.46268HepG2DGCR8
chr99784599897846048+intron-Distal5.4137014.80908HepG2XPO5
chr99777121797771268+intron-Distal3.802157.15738HepG2U2AF2
chr99784850797848601+intron-Distal7.3391588.04363HepG2DGCR8
chr99779553697795633+intron-Distal3.8685510.46773HepG2QKI
chr99780977597809904+intron-Distal3.424513.85440HepG2HNRNPC
chr99784773797847747+intron-Distal8.2048666.63966HepG2DGCR8
chr99776759697767630+intron-Distal,intron-Proximal4.4541710.03412HepG2EFTUD2
chr99784785297847883+intron-Distal5.417699.49459K562DGCR8
chr99784884397848876+intron-Distal,intron-Proximal6.2047135.71246HepG2DGCR8
chr99780689097807001+intron-Distal4.638605.97375HepG2TAF15
chr99781060997810652+intron-Distal4.6983311.53777HepG2HNRNPM
chr99776769497767823+intron-Distal,intron-Proximal4.8525212.28583HepG2EFTUD2
chr99779549297795653+intron-Distal4.6835618.70354HepG2PTBP1
chr99784752397847592+intron-Distal8.27713136.24159HepG2DGCR8
chr99779330697793380+intron-Distal4.9178212.60500HepG2HNRNPM
chr99779052397790552+intron-Distal4.426895.02084HepG2HNRNPM
chr99784708697847136+intron-Distal5.4755547.09412HepG2DGCR8
chr99783226997832321+intron-Distal4.324254.51735HepG2QKI
chr99784850597848561+intron-Distal4.373054.50934HepG2RBFOX2
chr99784439697844494+intron-Distal3.560856.14128HepG2SRSF1
chr99748956597489612+intron-Distal4.439373.45219HepG2RBFOX2
chr99784798797848010+intron-Distal5.6367938.21566HepG2DGCR8
chr99781004497810089+intron-Distal3.151343.11000HepG2HNRNPM
chr99784730797847334+intron-Distal5.2877543.26099HepG2DROSHA
chr99781755297817612+intron-Distal3.558414.38996HepG2HNRNPM
chr99784783497847890+intron-Distal6.7900791.16567HepG2DGCR8
chr99779566697795730+intron-Distal5.2084211.26688HepG2PCBP2
chr99784794797848101+intron-Distal7.18292124.78452HepG2DROSHA
chr99784700597847072+intron-Distal5.1252945.00080HepG2DGCR8
chr99784789097847933+intron-Distal6.4226742.53298HepG2DROSHA
chr99784770597847744+intron-Distal5.6608810.97339K562DGCR8
chr99781788097817935+intron-Distal4.008643.07980HepG2HNRNPM
chr99784882197848904+intron-Distal,intron-Proximal6.9375935.83550HepG2DROSHA
chr99776751297767542+intron-Distal,intron-Proximal4.655095.94114HepG2BUD13
chr99779256297792605+intron-Distal3.190053.10640HepG2SUGP2
chr99784817797848204+intron-Distal,intron-Proximal6.99500105.83967HepG2DGCR8
chr99784813697848201+intron-Distal,intron-Proximal6.0288056.26250HepG2DROSHA
chr99784841397848440+intron-Distal,intron-Proximal6.7840829.67552HepG2DGCR8
chr99784704997847129+intron-Distal5.876157.64819K562DROSHA
chr99768015497680256+intron-Distal5.082345.89856K562PTBP1
chr99784687397846935+intron-Distal4.0528020.58774HepG2DROSHA
chr99779176297791799+intron-Distal3.688684.14896HepG2HNRNPM
chr99760550397605599+intron-Distal4.487678.09313HepG2PCBP2
chr99760268097602818+intron-Distal3.497304.08528HepG2SUGP2
chr99782131797821344+intron-Distal4.058413.07980HepG2HNRNPM
chr99784739597847485+intron-Distal8.5771096.54107HepG2DGCR8
chr99779130297791356+intron-Distal4.2279813.76283HepG2HNRNPM
chr99778559497785641+intron-Distal3.9499013.96321HepG2HNRNPM
chr99784776497847810+intron-Distal7.1718431.10469K562DGCR8
chr99784795397848011+intron-Distal6.4129813.19418K562DROSHA
chr99776688697766945+intron-Distal3.156975.05027HepG2NKRF
chr99778057397780629+intron-Distal3.859747.63365HepG2HNRNPM
chr99784292497842974+intron-Proximal4.289939.18646HepG2SF3A3
chr99784289597842974+intron-Proximal3.596878.06630HepG2SF3B4
chr99776774897767804+intron-Proximal4.028507.30408HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C9orf3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C9orf3 is not available on ENCORE database.

  • 83 RBPs can affect the levels of C9orf3.  








The Knockdown/knockout RNA-Seq assay for C9orf3 is not available on ENCORE database.





83 RBPs can affect the gene expression of C9orf3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C9orf3ENSG00000148120.10432.44940238.270600.859806.315604.95570HepG2ABCF1
C9orf3ENSG00000148120.10340.29200257.486700.402202.418401.84310HepG2ACO1
C9orf3ENSG00000148120.10389.96430166.267901.2297012.2255010.34430HepG2ADAR
C9orf3ENSG00000148120.10349.94960258.691900.435802.699201.94100HepG2AKAP8L
C9orf3ENSG00000148120.10484.93030280.445300.790006.003504.86900HepG2ASCC1
C9orf3ENSG00000148120.10335.33880197.862500.761004.168403.08540HepG2BCLAF1
C9orf3ENSG00000148120.10506.81810266.444800.927508.114906.84630HepG2CIRBP
C9orf3ENSG00000148120.10413.72250257.425200.684406.739105.78430HepG2CKAP4
C9orf3ENSG00000148120.10314.06570174.028700.851605.656604.70600HepG2CPSF6
C9orf3ENSG00000148120.10296.39330140.656901.075208.122706.44240HepG2CSTF2
C9orf3ENSG00000148120.10612.34170308.283500.9900015.1443013.87830HepG2CELF1
C9orf3ENSG00000148120.10224.60270331.46650-0.561503.975003.11220HepG2DAZAP1
C9orf3ENSG00000148120.10473.66310197.312201.2633014.5309013.12060HepG2DDX21
C9orf3ENSG00000148120.10288.79590193.142200.580303.123402.15150HepG2DDX24
C9orf3ENSG00000148120.10478.35520197.622101.275208.549906.88950HepG2DDX59
C9orf3ENSG00000148120.10288.78480197.182900.550402.614201.62780HepG2DDX5
C9orf3ENSG00000148120.10448.56980278.938600.685304.117103.37500HepG2DDX6
C9orf3ENSG00000148120.10398.24390246.343600.692905.881904.96150HepG2DKC1
C9orf3ENSG00000148120.101659.31270143.296603.533406.922503.29580HepG2DROSHA
C9orf3ENSG00000148120.10633.98490268.112501.2415014.4798013.19190HepG2EIF2S1
C9orf3ENSG00000148120.10768.67000296.277401.3753017.5783015.97820HepG2EIF4A3
C9orf3ENSG00000148120.10422.69370288.502700.550902.429101.78320HepG2EIF4B
C9orf3ENSG00000148120.10441.09050313.266000.493602.965902.12440HepG2EIF4G2
C9orf3ENSG00000148120.10451.34830240.628800.907306.667505.52710HepG2FIP1L1
C9orf3ENSG00000148120.10387.47130174.325101.152204.748503.42490HepG2FTO
C9orf3ENSG00000148120.10465.17330277.325100.746105.256804.35290HepG2G3BP1
C9orf3ENSG00000148120.10511.78240294.454400.797406.352204.99340HepG2G3BP2
C9orf3ENSG00000148120.10354.68490210.526600.752403.301901.77500HepG2HLTF
C9orf3ENSG00000148120.10273.74930169.012500.695603.700802.96920HepG2HNRNPA1
C9orf3ENSG00000148120.10279.45020188.006900.571702.647301.96770HepG2HNRNPC
C9orf3ENSG00000148120.10585.76720301.936300.9560015.6859014.19760HepG2HNRNPL
C9orf3ENSG00000148120.10292.86060188.265500.637303.160002.49300HepG2HNRNPLL
C9orf3ENSG00000148120.10238.05190166.113900.519002.660301.72540HepG2HNRNPM
C9orf3ENSG00000148120.10290.31740186.763000.636304.367403.62080HepG2HNRNPU
C9orf3ENSG00000148120.10304.42720224.551000.439002.120901.48080HepG2IGF2BP1
C9orf3ENSG00000148120.10420.15660281.884500.575703.268102.53980HepG2IGF2BP2
C9orf3ENSG00000148120.10462.36900299.091700.628403.972503.18700HepG2MAGOH
C9orf3ENSG00000148120.10565.29380307.833800.876707.361206.35230HepG2NCBP2
C9orf3ENSG00000148120.10257.28240166.931500.624002.805802.05170HepG2NSUN2
C9orf3ENSG00000148120.10271.41690184.848800.554102.463101.65990HepG2PARN
C9orf3ENSG00000148120.10334.18540207.929800.684503.327302.19210HepG2PCBP2
C9orf3ENSG00000148120.10447.77090333.074400.426802.309501.75790HepG2PUM1
C9orf3ENSG00000148120.10403.31900262.266100.620805.486604.67260HepG2PUS1
C9orf3ENSG00000148120.10684.31240200.655801.7698016.7510015.15730HepG2RAVER1
C9orf3ENSG00000148120.10340.78880249.167900.451702.301601.51140HepG2RBM15
C9orf3ENSG00000148120.10415.75190289.148200.523803.304702.57300HepG2RBM25
C9orf3ENSG00000148120.10355.28270242.908000.548502.344701.43980HepG2RBM27
C9orf3ENSG00000148120.10483.40000327.386100.562104.417003.76200HepG2NELFE
C9orf3ENSG00000148120.10465.62820304.910200.610705.217104.40510HepG2RECQL
C9orf3ENSG00000148120.10392.21430245.689300.674704.235703.41860HepG2RPLP0
C9orf3ENSG00000148120.10309.03480197.107400.648702.860801.90260HepG2RPS10
C9orf3ENSG00000148120.10409.20240170.851201.2600010.464009.08360HepG2RRP9
C9orf3ENSG00000148120.10553.24600219.238401.3353013.6285012.06630HepG2SF3A3
C9orf3ENSG00000148120.10317.97660193.938400.713205.816604.93870HepG2SMN1
C9orf3ENSG00000148120.10295.47900204.599500.530202.254801.39940HepG2SMNDC1
C9orf3ENSG00000148120.10422.17090207.343301.025706.302805.11270HepG2SNRNP70
C9orf3ENSG00000148120.10340.96620200.506000.765903.884102.67640HepG2SRSF3
C9orf3ENSG00000148120.10302.64070224.049000.433702.310101.66970HepG2SRSF7
C9orf3ENSG00000148120.10509.91970260.076600.9712013.7330012.66970HepG2SRSF9
C9orf3ENSG00000148120.10958.48670402.638501.2512032.7775031.45740HepG2SSB
C9orf3ENSG00000148120.10238.32380160.855400.567102.551201.35570HepG2STAU1
C9orf3ENSG00000148120.10401.45640282.256000.508102.489201.45410HepG2STIP1
C9orf3ENSG00000148120.10448.50710222.873601.008807.281806.26800HepG2SUPV3L1
C9orf3ENSG00000148120.10371.15930264.030400.491203.051702.17870HepG2TIA1
C9orf3ENSG00000148120.10399.26620181.431201.1378012.5260011.59440HepG2TIAL1
C9orf3ENSG00000148120.10251.90600183.100300.460202.444501.90750HepG2TRIM56
C9orf3ENSG00000148120.10335.69790205.924000.705004.006803.25720HepG2U2AF1
C9orf3ENSG00000148120.10442.21660239.132200.886802.217901.34530HepG2U2AF2
C9orf3ENSG00000148120.10655.17970324.469901.013709.192007.62710HepG2UBE2L3
C9orf3ENSG00000148120.10490.84810131.659801.8984027.7474025.47590HepG2UCHL5
C9orf3ENSG00000148120.10314.17050204.089700.622202.582101.61510HepG2UPF2
C9orf3ENSG00000148120.10390.13840187.715801.0553011.8634010.75830HepG2UTP3
C9orf3ENSG00000148120.10479.60570219.394601.128209.883008.53150HepG2XRN2
C9orf3ENSG00000148120.10361.65300213.837000.758007.297606.51890HepG2ZNF622
C9orf3ENSG00000148120.10131.93830284.31690-1.107607.014606.14980K562AQR
C9orf3ENSG00000148120.1050.6735095.31540-0.911502.489301.66450K562BOP1
C9orf3ENSG00000148120.10135.64110203.46210-0.585002.773002.12140K562DDX47
C9orf3ENSG00000148120.1041.9836092.80130-1.144302.638801.66130K562EIF3A
C9orf3ENSG00000148120.1089.25690147.18640-0.721602.345001.40190K562EIF3D
C9orf3ENSG00000148120.1059.71670103.11690-0.788102.309401.52650K562FMR1
C9orf3ENSG00000148120.1045.3720096.76560-1.092703.465302.57980K562GPKOW
C9orf3ENSG00000148120.10127.89660192.80610-0.592202.556501.52320K562HNRNPA1
C9orf3ENSG00000148120.10122.65090178.43470-0.540802.176701.44560K562SF3A3
C9orf3ENSG00000148120.10110.03240180.70580-0.715703.138002.38870K562SRSF1
C9orf3ENSG00000148120.10239.21380336.80240-0.493602.690001.42160K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C9orf3 is not available on ENCORE database.





5 RBPs can affect the splicing of C9orf3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC9orf3ENSG00000148120.10chr9+978448569784500197842975978430629784896397849334-0.329000.000890.01863excludedHepG2U2AF1
SEC9orf3ENSG00000148120.10chr9+978448569784500197842975978430629784896397849334-0.418000.000010.00036excludedHepG2SRSF1
SEC9orf3ENSG00000148120.10chr9+978111039781133797767823977678989782297597823092-0.326000.000350.01311excludedHepG2SF3A3
SEC9orf3ENSG00000148120.10chr9+978448569784500197842975978430629784896397849334-0.416000.001700.05625excludedK562HNRNPU
SEC9orf3ENSG00000148120.10chr9+978448569784500197842975978430629784896397849334-0.378000.002100.07501excludedHepG2HNRNPU
MXEC9orf3ENSG00000148120.10chr9+97535283975354509755504697555200975225969752286297563038975632840.532000.000670.014901includedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C9orf3 is not avaliable on ENCORE database.