BPNT1

General Information

Gene Name       : BPNT1
Gene ID             : ENSG00000162813.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: BPNT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BPNT1ENSG00000162813.1752.2842.2447.26ENCSR000AEF
HepG2BPNT1ENSG00000162813.1730.1635.3832.77ENCSR985KAT
K562BPNT1ENSG00000162813.1737.4641.1039.28ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BPNT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • BPNT1 RNA is bound by 4 proteins.  







eCLIP assay for BPNT1 is not avaliable on ENCORE database.





4 proteins are bound to BPNT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1220231953220232039-3'-UTR,intron-Distal3.717768.29113HepG2UPF1
chr1220231750220231848-3'-UTR,intron-Distal,intron-Proximal3.804447.13820K562UPF1
chr1220246200220246287-CDS,intron-Distal4.009304.21087HepG2GRWD1
chr1220232305220232334-CDS,intron-Distal4.413745.86049K562LIN28B
chr1220246189220246251-CDS,intron-Distal,intron-Proximal3.352103.69481K562UCHL5
chr1220232214220232326-CDS,intron-Distal,intron-Proximal3.422564.93175HepG2GRWD1
chr1220233027220233058-CDS,intron-Distal,intron-Proximal4.585195.91381K562LIN28B
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BPNT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BPNT1 is not available on ENCORE database.

  • 87 RBPs can affect the levels of BPNT1.  








The Knockdown/knockout RNA-Seq assay for BPNT1 is not available on ENCORE database.





87 RBPs can affect the gene expression of BPNT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BPNT1ENSG00000162813.13401.90420621.12060-0.628007.844306.92580HepG2ACO1
BPNT1ENSG00000162813.13813.629601019.69030-0.325703.418402.67020HepG2AUH
BPNT1ENSG00000162813.13436.83590658.98140-0.593103.384002.34850HepG2BCCIP
BPNT1ENSG00000162813.13848.03410614.328000.465004.000003.09640HepG2CALR
BPNT1ENSG00000162813.131217.48820927.707700.392105.795704.77870HepG2DAZAP1
BPNT1ENSG00000162813.13719.65370563.135100.353702.243301.62510HepG2DDX21
BPNT1ENSG00000162813.132030.683001291.739900.652507.202206.23790HepG2DDX3X
BPNT1ENSG00000162813.13816.138201066.71680-0.386302.541101.97280HepG2EIF2S1
BPNT1ENSG00000162813.13381.03570505.81880-0.408702.477101.37340HepG2EIF2S2
BPNT1ENSG00000162813.13839.329701178.86720-0.490103.354302.65140HepG2EIF4A3
BPNT1ENSG00000162813.13779.879501147.75490-0.557503.502402.73260HepG2EIF4B
BPNT1ENSG00000162813.13903.877601170.81070-0.373304.520803.78690HepG2ETF1
BPNT1ENSG00000162813.13308.01030606.93880-0.9786012.2945010.57330HepG2EWSR1
BPNT1ENSG00000162813.13860.720201189.36770-0.466603.576802.79670HepG2FXR1
BPNT1ENSG00000162813.13743.913401103.34440-0.568704.645103.79330HepG2G3BP1
BPNT1ENSG00000162813.13788.499301171.30040-0.570905.192303.95980HepG2G3BP2
BPNT1ENSG00000162813.13367.36480540.52140-0.557103.963903.21000HepG2HNRNPA1
BPNT1ENSG00000162813.13646.307001117.16260-0.789509.511908.28080HepG2HNRNPK
BPNT1ENSG00000162813.13344.25580464.54930-0.432402.522301.61220HepG2HNRNPM
BPNT1ENSG00000162813.13492.44130597.26560-0.278401.929301.41400HepG2HNRNPU
BPNT1ENSG00000162813.13659.187601128.05330-0.775106.534504.92330HepG2KHSRP
BPNT1ENSG00000162813.13462.17150632.81870-0.453402.798201.65780HepG2LARP7
BPNT1ENSG00000162813.13489.66330664.67140-0.440902.594201.42250HepG2LIN28B
BPNT1ENSG00000162813.13756.955201189.78260-0.652406.282305.30290HepG2MAGOH
BPNT1ENSG00000162813.13783.698101196.45140-0.610405.021904.19410HepG2MATR3
BPNT1ENSG00000162813.13654.43000919.91310-0.491305.332304.28010HepG2NOL12
BPNT1ENSG00000162813.13636.709501090.66040-0.776508.221606.99130HepG2PABPC4
BPNT1ENSG00000162813.13449.86360591.17650-0.394103.223202.31640HepG2PARN
BPNT1ENSG00000162813.13710.691301110.65160-0.6441011.075609.99420HepG2PCBP1
BPNT1ENSG00000162813.13431.30720532.71120-0.304601.931901.30760HepG2PPIL4
BPNT1ENSG00000162813.13797.926201130.15770-0.502206.676905.90010HepG2PTBP1
BPNT1ENSG00000162813.13672.80680932.18210-0.470406.813005.96740HepG2PUM1
BPNT1ENSG00000162813.13665.54530931.50110-0.485004.912604.03290HepG2PUM2
BPNT1ENSG00000162813.13986.290501223.92860-0.311402.717002.09790HepG2QKI
BPNT1ENSG00000162813.13360.06840650.34730-0.852904.747003.83720HepG2RAVER1
BPNT1ENSG00000162813.13745.70140978.56650-0.392103.876503.29060HepG2RBM22
BPNT1ENSG00000162813.13898.054701110.81660-0.306702.268801.65310HepG2RBM25
BPNT1ENSG00000162813.13563.16090763.04970-0.438202.591701.63310HepG2RBM27
BPNT1ENSG00000162813.13657.844901257.73360-0.9350021.0205019.80140HepG2NELFE
BPNT1ENSG00000162813.13764.509401171.45040-0.6157010.159609.09310HepG2RECQL
BPNT1ENSG00000162813.13529.89130718.35700-0.439002.454401.44400HepG2RPS5
BPNT1ENSG00000162813.13807.332801176.58950-0.543408.135307.20360HepG2SF3B4
BPNT1ENSG00000162813.131280.999801105.229200.212801.891801.45380HepG2SRFBP1
BPNT1ENSG00000162813.13528.44050867.03330-0.7143011.091809.95280HepG2SRSF5
BPNT1ENSG00000162813.13810.32390959.55570-0.243902.208101.73720HepG2SSB
BPNT1ENSG00000162813.13837.866801103.94420-0.397904.392003.71010HepG2TAF15
BPNT1ENSG00000162813.13798.108501014.31360-0.345802.729601.89830HepG2TIA1
BPNT1ENSG00000162813.13395.28850652.92150-0.724004.562802.70650HepG2TRA2A
BPNT1ENSG00000162813.13451.25280585.54590-0.375803.187302.59170HepG2TRIM56
BPNT1ENSG00000162813.13600.81620857.90370-0.513904.804503.62140HepG2TUFM
BPNT1ENSG00000162813.13680.17040908.07770-0.416902.304501.54610HepG2UBE2L3
BPNT1ENSG00000162813.13238.40350381.04640-0.676604.139503.21070HepG2UCHL5
BPNT1ENSG00000162813.13441.36890649.64830-0.557703.275501.85350HepG2ZRANB2
BPNT1ENSG00000162813.13692.847201100.87660-0.668007.251105.30030K562ABCF1
BPNT1ENSG00000162813.13845.462201738.83600-1.0403019.1772017.79860K562AQR
BPNT1ENSG00000162813.13553.96720766.84170-0.469103.039701.54030K562BUD13
BPNT1ENSG00000162813.13299.26890481.47320-0.686004.541503.12050K562CCAR1
BPNT1ENSG00000162813.13739.407801129.53920-0.611303.428601.79840K562CKAP4
BPNT1ENSG00000162813.13801.708501159.75840-0.532707.173005.36150K562CPEB4
BPNT1ENSG00000162813.131623.107202122.01210-0.386704.791603.49540K562CELF1
BPNT1ENSG00000162813.13903.306001199.88510-0.409603.530402.80660K562DDX47
BPNT1ENSG00000162813.131774.859701456.249700.285303.202902.25180K562DKC1
BPNT1ENSG00000162813.13543.26020911.02400-0.7458011.6951010.36800K562EIF2S2
BPNT1ENSG00000162813.13300.44800489.76290-0.705003.423302.29430K562EIF3A
BPNT1ENSG00000162813.13629.02810871.25430-0.470003.816002.89060K562EIF3G
BPNT1ENSG00000162813.13659.58650926.53220-0.490304.386803.35450K562EIF4A3
BPNT1ENSG00000162813.13662.88580834.39580-0.332002.867801.68570K562EIF4B
BPNT1ENSG00000162813.131119.496201725.38830-0.6241010.211908.44960K562EIF4G2
BPNT1ENSG00000162813.13367.34250492.40590-0.422702.470701.71780K562GPKOW
BPNT1ENSG00000162813.13935.482601214.11710-0.376102.953902.17410K562GRSF1
BPNT1ENSG00000162813.13689.067801057.78960-0.618307.740406.02810K562HNRNPA1
BPNT1ENSG00000162813.13515.32210793.66000-0.623006.094005.24130K562HNRNPC
BPNT1ENSG00000162813.13483.91230708.62950-0.550304.554103.04310K562HNRNPF
BPNT1ENSG00000162813.131039.488201331.31290-0.357003.085002.19650K562MAGOH
BPNT1ENSG00000162813.13993.543601328.60030-0.419304.331703.15420K562MATR3
BPNT1ENSG00000162813.13633.04100934.84330-0.562408.008506.69890K562MTPAP
BPNT1ENSG00000162813.131519.636701887.48140-0.312702.868601.35060K562NOL12
BPNT1ENSG00000162813.13871.675301038.63920-0.252802.542501.82400K562NSUN2
BPNT1ENSG00000162813.13733.934401118.81420-0.608203.970902.47130K562PABPC1
BPNT1ENSG00000162813.13589.35210826.72600-0.488302.979902.11730K562PCBP3
BPNT1ENSG00000162813.131587.954601882.46090-0.245502.096901.38600K562PUF60
BPNT1ENSG00000162813.131610.207802002.77460-0.314803.117001.98220K562PUM1
BPNT1ENSG00000162813.131624.474101961.83050-0.272203.377702.31610K562PUM2
BPNT1ENSG00000162813.131815.772901342.102500.436004.156203.51060K562PUS1
BPNT1ENSG00000162813.131593.661301307.683700.285202.822702.22420K562RBM15
BPNT1ENSG00000162813.13824.492401240.23120-0.589006.589705.22210K562RBM22
BPNT1ENSG00000162813.13870.860301305.15480-0.583706.029804.32880K562NELFE
BPNT1ENSG00000162813.13657.90500857.98480-0.383103.026701.35690K562RPS10
BPNT1ENSG00000162813.13725.316501024.95460-0.498906.208705.02570K562SF3A3
BPNT1ENSG00000162813.13728.45110980.06990-0.428104.197003.13920K562SF3B4
BPNT1ENSG00000162813.13801.564701050.09560-0.389604.848203.65130K562SRPK2
BPNT1ENSG00000162813.13632.98400803.39870-0.343902.285201.34580K562SRSF4
BPNT1ENSG00000162813.13872.797701283.31070-0.556205.578004.55400K562TARDBP
BPNT1ENSG00000162813.13761.61390943.49590-0.309002.335701.59910K562U2AF2
BPNT1ENSG00000162813.13888.262801101.29550-0.310103.187702.41940K562UPF1
BPNT1ENSG00000162813.13729.878401245.61290-0.771108.147106.17690K562UTP3
BPNT1ENSG00000162813.13719.02820979.97020-0.446706.012904.81470K562WDR43
BPNT1ENSG00000162813.131639.428602060.47700-0.329803.111401.73350K562WRN
BPNT1ENSG00000162813.131209.072801958.72030-0.6960010.456708.65420K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BPNT1 is not available on ENCORE database.





11 RBPs can affect the splicing of BPNT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEBPNT1ENSG00000162813.13chr1-2202530682202531962202473082202474132202630272202631910.110000.000000.00065includedK562TAF15
SEBPNT1ENSG00000162813.13chr1-220236098220236296220233027220233133220240643220240735-0.062000.007080.09944excludedK562SRSF1
SEBPNT1ENSG00000162813.13chr1-2202394142202394592202360982202362962202406432202407350.055000.000680.07263includedK562FMR1
SEBPNT1ENSG00000162813.13chr1-220236098220236296220233027220233133220240643220240735-0.111000.000000.00000excludedK562PUS1
SEBPNT1ENSG00000162813.13chr1-2202394142202394592202360982202362962202406432202407350.071000.000010.00220includedHepG2LARP4
SEBPNT1ENSG00000162813.13chr1-220236098220236296220233027220233133220240643220240735-0.053000.000200.01011excludedK562UTP18
SEBPNT1ENSG00000162813.13chr1-220236098220236296220233027220233133220240643220240735-0.100000.000830.01709excludedK562U2AF2
SEBPNT1ENSG00000162813.13chr1-220236098220236296220233027220233133220240643220240735-0.100000.000180.00966excludedK562TARDBP
SEBPNT1ENSG00000162813.13chr1-220236098220236296220233027220233133220240643220240735-0.095000.000000.00001excludedK562AGGF1
SEBPNT1ENSG00000162813.13chr1-220236098220236296220233027220233133220240643220240735-0.064000.000850.09833excludedK562ZC3H8
SEBPNT1ENSG00000162813.13chr1-2202394142202394592202360982202362962202406432202407350.056000.000680.04613includedHepG2SRSF9

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BPNT1 is not avaliable on ENCORE database.