BFAR

General Information

Gene Name       : BFAR
Gene ID             : ENSG00000103429.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: BFAR)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BFARENSG00000103429.1048.3842.1745.28ENCSR000AEF
HepG2BFARENSG00000103429.1055.4296.5375.97ENCSR985KAT
K562BFARENSG00000103429.1059.8355.5857.70ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BFAR is not avaliable on ENCORE database.



Proteins bound to RNA
  • BFAR RNA is bound by 8 proteins.  







eCLIP assay for BFAR is not avaliable on ENCORE database.





8 proteins are bound to BFAR RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr161473813014738159+3'-UTR,5'-UTR,intron-Proximal3.648966.02664K562DDX3X
chr161476177614761849+3'-UTR,intron-Distal,intron-Proximal3.312044.53005K562YBX3
chr161475587614755965+3'-UTR,CDS,intron-Proximal3.601966.74268HepG2PRPF8
chr161476213714762231+3'-UTR,intron-Distal4.921857.69327HepG2UPF1
chr161476277614762824+3'-UTR,intron-Distal,intron-Proximal4.211573.56427K562FAM120A
chr161475889614758991+3'-UTR,CDS,intron-Proximal4.588364.68690HepG2PRPF8
chr161476214114762250+3'-UTR,intron-Distal5.376856.64872K562UPF1
chr161476241714762506+3'-UTR,intron-Distal5.158217.98718HepG2UPF1
chr161476181514761880+3'-UTR,intron-Distal,intron-Proximal4.791186.45671HepG2UPF1
chr161476192814762085+3'-UTR,intron-Distal5.0396916.58787HepG2UPF1
chr161476256814762670+3'-UTR,intron-Distal4.7969712.76496HepG2UPF1
chr161472678314726884+5'-UTR,intron-Proximal3.487147.87625HepG2NCBP2
chr161472686914726922+5'-UTR,intron-Proximal3.8960410.32997HepG2PRPF8
chr161473837714738467+5'-UTR,CDS,intron-Proximal3.411824.85828HepG2BCLAF1
chr161472678614726877+5'-UTR,intron-Proximal4.5729513.05315K562DDX3X
chr161473834914738461+5'-UTR,CDS4.771866.50203HepG2GRWD1
chr161472679514726843+5'-UTR4.870539.60311HepG2DDX3X
chr161474241914742495+CDS,intron-Distal,intron-Proximal4.752464.02817HepG2PRPF8
chr161474366014743742+CDS,intron-Distal,intron-Proximal3.281364.27261HepG2GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BFAR is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BFAR is not available on ENCORE database.

  • 100 RBPs can affect the levels of BFAR.  








The Knockdown/knockout RNA-Seq assay for BFAR is not available on ENCORE database.





100 RBPs can affect the gene expression of BFAR :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BFARENSG00000103429.61558.508902222.15140-0.511804.218403.06120HepG2BCCIP
BFARENSG00000103429.61378.432301930.86220-0.486204.156403.07460HepG2BCLAF1
BFARENSG00000103429.63182.442802152.673700.563907.791606.85000HepG2BOP1
BFARENSG00000103429.61431.953102423.91720-0.7594016.0901014.50140HepG2CALR
BFARENSG00000103429.61895.118202419.68110-0.352507.100006.12570HepG2CKAP4
BFARENSG00000103429.61933.447202769.68840-0.518503.051702.24510HepG2CNOT7
BFARENSG00000103429.62780.661203258.14550-0.228602.606501.98080HepG2CELF1
BFARENSG00000103429.61963.679902329.57180-0.246502.555301.44360HepG2DDX1
BFARENSG00000103429.61644.153202139.67040-0.380003.737102.95910HepG2DDX21
BFARENSG00000103429.63734.771704644.74430-0.314602.323801.74560HepG2DDX3X
BFARENSG00000103429.62093.866402598.81910-0.311702.455801.50130HepG2DDX5
BFARENSG00000103429.61810.394802203.18430-0.283302.300601.40740HepG2DHX30
BFARENSG00000103429.61780.952702284.27740-0.359105.054304.12930HepG2DNAJC21
BFARENSG00000103429.61862.015502264.10860-0.282104.837604.01410HepG2DNAJC2
BFARENSG00000103429.61611.747102396.89200-0.572506.523805.16590HepG2EEF2
BFARENSG00000103429.61589.336401998.06490-0.330202.502801.44820HepG2EFTUD2
BFARENSG00000103429.62255.737503835.63110-0.7659011.032409.89630HepG2EIF2S1
BFARENSG00000103429.62871.061004239.02700-0.562105.396504.50570HepG2EIF4A3
BFARENSG00000103429.61638.559004126.89880-1.3326020.5170018.76230HepG2EIF4B
BFARENSG00000103429.62938.832903456.20290-0.233903.114502.23610HepG2EIF4G1
BFARENSG00000103429.63873.179204324.20960-0.158901.873501.35830HepG2ETF1
BFARENSG00000103429.63768.563602987.656900.334902.287901.58480HepG2FIP1L1
BFARENSG00000103429.61291.865501979.65610-0.615802.370201.43660HepG2FTO
BFARENSG00000103429.62869.084204276.38410-0.575806.766205.71360HepG2FXR1
BFARENSG00000103429.61649.824403967.29760-1.2658025.3821023.43840HepG2G3BP1
BFARENSG00000103429.63368.867504211.37120-0.322002.575501.71860HepG2G3BP2
BFARENSG00000103429.61286.655201732.35830-0.429104.089002.98720HepG2GEMIN5
BFARENSG00000103429.61214.090602306.16140-0.9256018.6913017.25420HepG2HNRNPA1
BFARENSG00000103429.62015.706802565.17890-0.347803.313302.56010HepG2HNRNPC
BFARENSG00000103429.63367.535204016.49110-0.254201.924301.33600HepG2HNRNPK
BFARENSG00000103429.62871.899803191.01250-0.152001.956401.37760HepG2HNRNPL
BFARENSG00000103429.61805.050402548.21940-0.4975011.4641010.30080HepG2HNRNPU
BFARENSG00000103429.62375.550704032.78660-0.7635011.234009.97210HepG2IGF2BP2
BFARENSG00000103429.61953.671103784.13160-0.953804.525603.27720HepG2IGF2BP3
BFARENSG00000103429.62230.926902602.92170-0.222503.618402.79030HepG2ILF2
BFARENSG00000103429.63110.610604056.07850-0.382902.384301.46390HepG2KHSRP
BFARENSG00000103429.61786.650902348.89280-0.394703.741502.33030HepG2LIN28B
BFARENSG00000103429.62117.713804277.87430-1.0144018.1721016.56880HepG2MAGOH
BFARENSG00000103429.62328.590604301.91730-0.8855012.7407011.45900HepG2MATR3
BFARENSG00000103429.61336.186002180.39300-0.706505.406404.02410HepG2MTPAP
BFARENSG00000103429.62612.970204403.33310-0.7529010.234209.05860HepG2NCBP2
BFARENSG00000103429.62929.020103473.69260-0.246102.548301.81660HepG2NOL12
BFARENSG00000103429.61517.346201895.67750-0.321202.517501.80260HepG2NSUN2
BFARENSG00000103429.61471.502603921.82980-1.4142032.6568030.26240HepG2PABPC4
BFARENSG00000103429.63017.936803997.43240-0.405507.065406.16900HepG2PCBP1
BFARENSG00000103429.63105.658602698.936200.202402.303801.59110HepG2PRPF4
BFARENSG00000103429.61913.137102649.53590-0.469802.764101.54800HepG2PRPF6
BFARENSG00000103429.62460.764804067.39930-0.7250025.5696024.22830HepG2PTBP1
BFARENSG00000103429.63104.583403520.13820-0.181202.561201.98590HepG2PUM1
BFARENSG00000103429.62114.674202465.23970-0.221302.930102.30090HepG2PUS1
BFARENSG00000103429.62738.777004405.38720-0.6857017.7781016.38870HepG2QKI
BFARENSG00000103429.63492.742002853.565400.291503.398102.45680HepG2RBM15
BFARENSG00000103429.62637.627503998.06120-0.6001010.831109.55830HepG2RBM25
BFARENSG00000103429.62517.634004526.73930-0.8464035.0864033.62110HepG2NELFE
BFARENSG00000103429.62821.237404215.83500-0.5795017.8190016.47710HepG2RECQL
BFARENSG00000103429.61722.061402388.87370-0.472202.759601.81740HepG2RPS10
BFARENSG00000103429.61214.313401893.30050-0.640809.866108.79260HepG2RPS19
BFARENSG00000103429.61249.169902487.75750-0.9939018.4924016.56410HepG2RPS2
BFARENSG00000103429.61438.863702781.19980-0.9508010.989009.43900HepG2RPS3A
BFARENSG00000103429.61772.799102539.44010-0.518505.473103.94830HepG2RPS5
BFARENSG00000103429.61785.042802269.30160-0.346306.264505.35480HepG2SAFB2
BFARENSG00000103429.63465.464002535.491400.450703.088402.37580HepG2SF3A3
BFARENSG00000103429.6986.179302116.13210-1.1015022.4910020.70220HepG2SF3B1
BFARENSG00000103429.62877.441604234.93450-0.5576016.4712015.21220HepG2SF3B4
BFARENSG00000103429.62723.599303179.65020-0.223403.416902.65140HepG2SLBP
BFARENSG00000103429.61528.634102646.38850-0.7918033.9350032.10620HepG2SMN1
BFARENSG00000103429.65014.021304082.209700.296506.311005.63840HepG2SRFBP1
BFARENSG00000103429.62938.518104420.25400-0.5890020.2473019.21600HepG2SRSF1
BFARENSG00000103429.62454.659103274.13730-0.415608.370307.35760HepG2SRSF5
BFARENSG00000103429.62279.097703544.38820-0.6371020.2759019.16500HepG2SSB
BFARENSG00000103429.63253.715703723.53280-0.194602.687502.07230HepG2SUCLG1
BFARENSG00000103429.63529.140603972.81710-0.170801.822001.34880HepG2TAF15
BFARENSG00000103429.6977.722701457.79880-0.576305.206403.90240HepG2TFIP11
BFARENSG00000103429.62895.291503650.77430-0.334503.978102.98250HepG2TIA1
BFARENSG00000103429.61190.744802476.06850-1.0562030.1070028.78300HepG2TIAL1
BFARENSG00000103429.62198.939802498.20580-0.184101.921801.43520HepG2TRIM56
BFARENSG00000103429.61647.654603239.68870-0.9754024.9448022.24480HepG2TUFM
BFARENSG00000103429.61922.643202555.73810-0.410603.887303.14710HepG2U2AF1
BFARENSG00000103429.62461.398603429.22570-0.478404.479003.39630HepG2UBE2L3
BFARENSG00000103429.61760.580702248.59280-0.353006.150305.17590HepG2UPF1
BFARENSG00000103429.62857.328302170.928700.396308.074207.13710HepG2UTP3
BFARENSG00000103429.61681.616902491.12820-0.567004.162302.81250HepG2XPO5
BFARENSG00000103429.61559.408602141.01790-0.457304.099103.22500HepG2XRN2
BFARENSG00000103429.62373.482802663.56690-0.166402.089501.49330HepG2ZC3H8
BFARENSG00000103429.61027.530901210.40750-0.236302.158801.30890K562BCLAF1
BFARENSG00000103429.6960.183801238.26280-0.366903.358102.49190K562CPSF6
BFARENSG00000103429.61050.210101304.52010-0.312803.276701.95410K562DDX21
BFARENSG00000103429.61162.06060829.235000.486704.644903.58240K562EIF4A3
BFARENSG00000103429.61810.783402205.79450-0.284703.339602.31080K562EIF4G2
BFARENSG00000103429.6659.151501067.88160-0.696107.130405.59320K562FTO
BFARENSG00000103429.61186.61590862.365600.460405.815504.98590K562FXR1
BFARENSG00000103429.6989.194101220.89890-0.303602.856301.69670K562GLRX3
BFARENSG00000103429.61094.554601352.05120-0.304802.596501.55500K562HNRNPA1
BFARENSG00000103429.6871.842501079.61610-0.308402.244601.69890K562HNRNPC
BFARENSG00000103429.61646.387801168.001300.495204.185503.02490K562HNRNPM
BFARENSG00000103429.61254.803001497.23040-0.254802.348101.52450K562HNRNPU
BFARENSG00000103429.6700.998301009.48240-0.526102.820001.87660K562KRR1
BFARENSG00000103429.6914.455101153.99440-0.335702.503001.67410K562METAP2
BFARENSG00000103429.6966.125501283.61430-0.409905.691004.55810K562MTPAP
BFARENSG00000103429.61189.384501426.22020-0.262003.499802.67010K562NSUN2
BFARENSG00000103429.6977.539401520.09600-0.636906.378805.11230K562PCBP3
BFARENSG00000103429.6800.178001165.97390-0.543106.610905.38330K562POLR2G
BFARENSG00000103429.61139.74160925.276800.300601.946901.31080K562PRPF8
BFARENSG00000103429.62091.814002508.21710-0.261902.762201.80390K562PUM2
BFARENSG00000103429.61362.563301038.884400.391203.570302.33390K562SAFB
BFARENSG00000103429.6732.390101124.34880-0.618405.246803.88230K562SF3B1
BFARENSG00000103429.61226.064301441.80920-0.233802.594701.68350K562SRPK2
BFARENSG00000103429.61380.291601098.499400.329302.860402.14380K562SRSF1
BFARENSG00000103429.61500.869901169.490500.359803.696302.74740K562SYNCRIP
BFARENSG00000103429.6728.98470931.05020-0.353002.120901.31320K562TIAL1
BFARENSG00000103429.6728.98570948.23870-0.379402.412301.46870K562UCHL5
BFARENSG00000103429.61069.123301293.98650-0.275402.089401.33030K562WDR3
BFARENSG00000103429.61691.958702167.09690-0.357103.635602.14410K562WRN
BFARENSG00000103429.61542.384802061.09270-0.418203.960002.89510K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BFAR is not available on ENCORE database.





12 RBPs can affect the splicing of BFAR :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEBFARENSG00000103429.6chr16+147489221474906714738130147384661475574814755922-0.077000.000000.00000excludedHepG2U2AF1
SEBFARENSG00000103429.6chr16+147436601474383014738144147384661475574814755922-0.819000.000860.08488excludedK562FMR1
SEBFARENSG00000103429.6chr16+147436601474383014742244147424491475574814755922-0.146000.001150.08176excludedHepG2TBRG4
SEBFARENSG00000103429.6chr16+147436601474383014738144147384661474892214749067-0.064000.000500.00779excludedHepG2U2AF2
SEBFARENSG00000103429.6chr16+147436601474383014742244147424491474892214749067-0.077000.000760.00967excludedK562AQR
SEBFARENSG00000103429.6chr16+147489221474906714738130147384661475574814755922-0.062000.000000.00000excludedHepG2FTO
SEBFARENSG00000103429.6chr16+147436601474383014738144147384661474892214749067-0.086000.000400.07416excludedK562SBDS
SEBFARENSG00000103429.6chr16+147436601474380314738144147384661474892214749067-0.486000.001480.03497excludedHepG2SRSF1
SEBFARENSG00000103429.6chr16+147422441474244914738130147384661474366014743830-0.057000.000100.01771excludedHepG2SSB
SEBFARENSG00000103429.6chr16+147436601474383014742244147424491475574814755922-0.479000.000060.00451excludedK562SF3B1
SEBFARENSG00000103429.6chr16+147436601474383014742244147424491474892214749067-0.093000.000170.05785excludedHepG2DROSHA
A3SSBFARENSG00000103429.6chr16+1476147014761694147614911476169414758725147589280.052000.000570.00422longerK562AQR
A3SSBFARENSG00000103429.6chr16+1474364014743830147436601474383014742244147424490.074000.000040.00040longerK562AQR
MXEBFARENSG00000103429.6chr16+14738130147384661474366014743830147266711472687514748922147490670.085000.003910.071271includedHepG2DDX55
MXEBFARENSG00000103429.6chr16+14738130147384661474366014743830147266711472687514748922147490670.101000.002290.016291includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BFAR is not avaliable on ENCORE database.