ZNHIT1

General Information

Gene Name : ZNHIT1
Gene ID : ENSG00000106400.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ZNHIT1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ZNHIT1	ENSG00000106400.11	4.78	20.55	12.67	ENCSR000AEF
HepG2	ZNHIT1	ENSG00000106400.11	29.20	22.63	25.91	ENCSR985KAT
K562	ZNHIT1	ENSG00000106400.11	72.65	54.86	63.76	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ZNHIT1 is not avaliable on ENCORE database.

Proteins bound to RNA

ZNHIT1 RNA is bound by 16 proteins.

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eCLIP assay for ZNHIT1 is not avaliable on ENCORE database.

16 proteins are bound to ZNHIT1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	100865884	100865964	+	CDS,intron-Proximal	5.01624	21.56271	HepG2	SUB1
chr7	100861463	100861499	+	5'-UTR,CDS,intron-Proximal	5.29817	20.07970	HepG2	SUB1
chr7	100867020	100867117	+	CDS	4.70250	17.79951	HepG2	LARP4
chr7	100867298	100867347	+	3'-UTR	4.38947	17.65258	HepG2	LARP4
chr7	100867302	100867353	+	3'-UTR	3.29670	16.17113	K562	YBX3
chr7	100867231	100867293	+	3'-UTR,CDS	5.98844	15.36878	HepG2	LARP4
chr7	100867353	100867422	+	3'-UTR	4.75162	14.77819	K562	YBX3
chr7	100861473	100861546	+	5'-UTR,CDS,intron-Proximal	3.72451	10.59445	HepG2	PRPF8
chr7	100867412	100867457	+	3'-UTR	5.31375	9.39648	K562	PABPC4
chr7	100867227	100867285	+	3'-UTR,CDS	6.13001	8.90713	K562	RPS3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 32 entries

eCLIP assay for ZNHIT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ZNHIT1 is not available on ENCORE database.
82 RBPs can affect the levels of ZNHIT1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ZNHIT1 is not available on ENCORE database.

82 RBPs can affect the gene expression of ZNHIT1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ZNHIT1	ENSG00000106400.7	2327.93810	1085.43570	1.10070	22.45020	20.92770	K562	PUS1
ZNHIT1	ENSG00000106400.7	508.53420	984.89680	-0.95360	17.98600	16.73570	HepG2	TAF15
ZNHIT1	ENSG00000106400.7	547.29210	990.88930	-0.85640	16.90940	15.61480	HepG2	PCBP1
ZNHIT1	ENSG00000106400.7	638.10310	1095.69600	-0.78000	14.69820	13.79210	HepG2	SRSF1
ZNHIT1	ENSG00000106400.7	800.06790	416.03120	0.94330	14.56520	13.57700	HepG2	TIAL1
ZNHIT1	ENSG00000106400.7	1319.74020	864.78020	0.60970	11.69270	10.78100	HepG2	SSB
ZNHIT1	ENSG00000106400.7	1653.30530	1057.53530	0.64450	11.30470	10.12550	K562	RBM15
ZNHIT1	ENSG00000106400.7	716.24690	1122.11020	-0.64770	10.44310	9.51580	HepG2	NELFE
ZNHIT1	ENSG00000106400.7	571.32970	891.42020	-0.64180	10.15580	9.21470	HepG2	SRSF9
ZNHIT1	ENSG00000106400.7	1110.44100	635.51980	0.80500	10.42860	8.54530	K562	PPIG
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 90 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ZNHIT1 is not available on ENCORE database.

27 RBPs can affect the splicing of ZNHIT1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ZNHIT1	ENSG00000106400.7	chr7	+	100861599	100861766			100861446	100861498	100865884	100866055	-0.26700	0.00000	0.00000	excluded	K562	SRSF1
SE	ZNHIT1	ENSG00000106400.7	chr7	+	100865852	100866055			100860948	100861498	100866757	100866837	-0.06200	0.00000	0.00001	excluded	K562	AQR
SE	ZNHIT1	ENSG00000106400.7	chr7	+	100861599	100865077			100861461	100861498	100865884	100866055	0.50500	0.00000	0.00000	included	HepG2	TAF15
MXE	ZNHIT1	ENSG00000106400.7	chr7	+	100865884	100866055	100866757	100866837	100860948	100861498	100866953	100867123	-0.19400	0.00000	0.00000	2included	HepG2	TAF15
SE	ZNHIT1	ENSG00000106400.7	chr7	+	100861599	100865077			100861461	100861498	100865884	100866055	0.22600	0.00001	0.00402	included	HepG2	TIA1
SE	ZNHIT1	ENSG00000106400.7	chr7	+	100861599	100865077			100861461	100861498	100865884	100866055	-0.38400	0.00001	0.01011	excluded	HepG2	XPO5
MXE	ZNHIT1	ENSG00000106400.7	chr7	+	100865884	100866055	100866757	100866837	100860948	100861498	100866953	100867123	0.07300	0.00001	0.00115	1included	K562	SBDS
SE	ZNHIT1	ENSG00000106400.7	chr7	+	100864913	100865077			100861461	100861498	100865884	100866055	-0.08500	0.00005	0.03114	excluded	HepG2	BCCIP
SE	ZNHIT1	ENSG00000106400.7	chr7	+	100861599	100865077			100861461	100861498	100865884	100866055	-0.13700	0.00006	0.02997	excluded	HepG2	XRN2
SE	ZNHIT1	ENSG00000106400.7	chr7	+	100861599	100861766			100861446	100861498	100865884	100866055	-0.20800	0.00007	0.00462	excluded	K562	TARDBP

Showing 1 to 10 of 31 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ZNHIT1

General Information

Functions

Localization

Domains (AlphaFold: ZNHIT1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ZNHIT1 is not avaliable on ENCORE database.

16 proteins are bound to ZNHIT1 RNA:

eCLIP assay for ZNHIT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ZNHIT1 is not available on ENCORE database.

82 RBPs can affect the gene expression of ZNHIT1 :

The Knockdown/knockout RNA-Seq assay for ZNHIT1 is not available on ENCORE database.

27 RBPs can affect the splicing of ZNHIT1 :

The Knockdown/knockout RNA-Seq assay for ZNHIT1 is not avaliable on ENCORE database.