WDR48

General Information

Gene Name       : WDR48
Gene ID             : ENSG00000114742.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: WDR48)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878WDR48ENSG00000114742.1325.4324.9825.20ENCSR000AEF
HepG2WDR48ENSG00000114742.1319.3826.7423.06ENCSR985KAT
K562WDR48ENSG00000114742.1331.8633.5632.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for WDR48 is not avaliable on ENCORE database.



Proteins bound to RNA
  • WDR48 RNA is bound by 18 proteins.  







eCLIP assay for WDR48 is not avaliable on ENCORE database.





18 proteins are bound to WDR48 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr33910726139107359+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.311915.63851K562SF3B4
chr33912957239129661+3'-UTR,CDS,intron-Proximal4.5419710.68651K562SF3B4
chr33913796539138000+3'-UTR4.264423.11728K562FAM120A
chr33913672839136769+3'-UTR3.182215.62891K562UPF1
chr33912699339127060+3'-UTR,CDS,intron-Proximal4.036013.77215K562U2AF2
chr33913781139137862+3'-UTR5.0816614.14667K562UPF1
chr33913681539136920+3'-UTR,intron-Proximal3.541743.73678HepG2UPF1
chr33913554439135557+3'-UTR,CDS3.831783.01428K562UCHL5
chr33913737839137487+3'-UTR3.956787.11247HepG2UPF1
chr33913766339137726+3'-UTR3.9746912.17329K562UPF1
chr33913649139136538+3'-UTR3.928493.64119HepG2UPF1
chr33913762339137729+3'-UTR4.172497.88159HepG2UPF1
chr33913795739138010+3'-UTR4.141403.07786HepG2UPF1
chr33913789439137954+3'-UTR3.586357.68147K562FAM120A
chr33913789339137941+3'-UTR3.896754.89200K562ZC3H11A
chr33913789839137951+3'-UTR3.935093.34655HepG2AKAP1
chr33913641939136456+3'-UTR3.948878.71030K562UPF1
chr33911862839118697+3'-UTR,CDS,intron-Proximal4.169119.98400HepG2BCLAF1
chr33913795739138028+3'-UTR5.8345126.18636K562UPF1
chr33911108839111180+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.3853311.17285K562SF3B4
chr33913553439135564+3'-UTR,CDS,intron-Proximal4.922596.13315HepG2BCLAF1
chr33912569439125753+3'-UTR,CDS3.402276.20035HepG2BCLAF1
chr33913311539133188+3'-UTR,CDS,intron-Proximal3.376634.26492HepG2BCLAF1
chr33913733739137432+3'-UTR5.6726421.16018K562UPF1
chr33911023939110319+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.470284.12401HepG2U2AF2
chr33913536039135407+3'-UTR,CDS,intron-Proximal4.047453.70678K562BUD13
chr33913071739130772+3'-UTR,CDS,intron-Proximal3.579725.87745K562BUD13
chr33912967639129768+3'-UTR,CDS,intron-Proximal4.085045.47926K562AQR
chr33911621939116308+3'-UTR,CDS3.998598.25092HepG2BCLAF1
chr33913638439136470+3'-UTR5.5493031.94665K562PUM2
chr33913638339136470+3'-UTR4.142613.34655HepG2AKAP1
chr33912701839127089+3'-UTR,CDS4.856376.64300K562ZNF622
chr33912959539129676+3'-UTR,CDS,intron-Proximal3.992118.27931K562AQR
chr33913763539137725+3'-UTR3.112113.41562HepG2AKAP1
chr33911113639111200+3'-UTR,5'-UTR,CDS,intron-Distal4.446248.80935HepG2BCLAF1
chr33911637639116441+3'-UTR,CDS4.173845.36555HepG2BCLAF1
chr33912695339127058+3'-UTR,CDS,intron-Proximal3.177804.18806HepG2U2AF2
chr33913666139136771+3'-UTR3.490774.84679K562IGF2BP1
chr33913763339137697+3'-UTR4.268384.81596K562AKAP1
chr33912564839125672+3'-UTR,CDS3.969143.02457HepG2BCLAF1
chr33913756339137605+3'-UTR3.225044.50192K562FAM120A
chr33912571339125750+3'-UTR,CDS3.161093.12941K562UCHL5
chr33913755439137616+3'-UTR4.5523219.64189K562UPF1
chr33910827939108364+3'-UTR,5'-UTR,CDS,intron-Distal3.322825.79905HepG2BCLAF1
chr33913788839137957+3'-UTR5.4451538.70489K562UPF1
chr33913638139136467+3'-UTR4.4463010.16433HepG2UPF1
chr33913701039137073+3'-UTR4.5517112.76076K562UPF1
chr33910828439108367+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.967563.83925K562YBX3
chr33913803539138074+3'-UTR3.852548.37857K562UPF1
chr33913689039136964+3'-UTR,intron-Proximal4.087513.98590HepG2AKAP1
chr33909350939093627+5'-UTR,CDS,intron-Proximal4.273997.38067HepG2PRPF8
chr33909393539094023+5'-UTR,intron-Distal3.550943.35044K562HNRNPM
chr33909386639094032+5'-UTR,intron-Distal4.093613.62366HepG2HNRNPM
chr33910745039107497+intron-Distal,intron-Proximal3.071134.37001K562EFTUD2
chr33913290539133033+intron-Distal,intron-Proximal3.132514.10408K562KHSRP
chr33910934339109418+intron-Distal4.622364.20763HepG2U2AF2
chr33912787439127880+intron-Distal5.7895810.84943K562AQR
chr33911944739119558+intron-Distal,intron-Proximal3.354044.16517K562KHSRP
chr33910798439108029+intron-Distal,intron-Proximal4.488175.16342K562SF3B4
chr33912788039127889+intron-Distal5.7642710.44569K562AQR
chr33912626139126377+intron-Distal,intron-Proximal4.345164.76003K562KHSRP
chr33912788939127950+intron-Distal5.0208412.70303K562AQR
chr33910751839107581+intron-Distal3.238343.18246K562PRPF8
chr33912779139127883+intron-Distal,intron-Proximal4.673814.55944K562ZNF622
chr33912623239126339+intron-Distal,intron-Proximal4.181374.98250K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for WDR48 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for WDR48 is not available on ENCORE database.

  • 96 RBPs can affect the levels of WDR48.  








The Knockdown/knockout RNA-Seq assay for WDR48 is not available on ENCORE database.





96 RBPs can affect the gene expression of WDR48 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
WDR48ENSG00000114742.91059.563101260.73530-0.250802.645102.04810HepG2ACO1
WDR48ENSG00000114742.91023.581901445.40750-0.497804.225903.26410HepG2ASCC1
WDR48ENSG00000114742.91583.533001364.292000.214902.033501.42770HepG2AUH
WDR48ENSG00000114742.9610.48410971.23750-0.669904.854403.60980HepG2BCCIP
WDR48ENSG00000114742.91724.970401397.779300.303302.699601.93770HepG2CALR
WDR48ENSG00000114742.91334.112601901.93440-0.511603.663902.52700HepG2CCAR1
WDR48ENSG00000114742.9984.049601209.82810-0.298002.369101.34750HepG2CPSF7
WDR48ENSG00000114742.91105.729701417.58780-0.358404.311903.54170HepG2CELF1
WDR48ENSG00000114742.9877.413501121.44220-0.354002.733902.05950HepG2DDX21
WDR48ENSG00000114742.9869.095101077.03220-0.309503.744803.00800HepG2DNAJC2
WDR48ENSG00000114742.9774.884501184.12850-0.611805.740704.45180HepG2EEF2
WDR48ENSG00000114742.9767.88860987.23290-0.362502.335701.31960HepG2EFTUD2
WDR48ENSG00000114742.91039.553201381.92600-0.410702.738502.14880HepG2EIF2S1
WDR48ENSG00000114742.9648.13750961.29960-0.568704.351103.23760HepG2EIF3D
WDR48ENSG00000114742.91265.546901503.77220-0.248802.550201.74070HepG2EIF4G1
WDR48ENSG00000114742.9615.43050859.06190-0.481204.679403.12160HepG2FAM120A
WDR48ENSG00000114742.9929.046401324.28060-0.511403.151401.95910HepG2FUS
WDR48ENSG00000114742.91190.167301540.65290-0.372402.695302.01270HepG2FXR1
WDR48ENSG00000114742.9563.805601429.35390-1.3421021.4149019.64370HepG2G3BP1
WDR48ENSG00000114742.9658.46820855.92840-0.378402.358001.53850HepG2GEMIN5
WDR48ENSG00000114742.9604.81720840.57370-0.474902.814701.40050HepG2HNRNPAB
WDR48ENSG00000114742.9598.26930881.68480-0.559503.542501.80940HepG2HNRNPD
WDR48ENSG00000114742.91042.261801446.94770-0.473304.308203.45230HepG2HNRNPK
WDR48ENSG00000114742.9938.286601388.49050-0.5654011.7749010.47060HepG2HNRNPL
WDR48ENSG00000114742.9835.361501023.52680-0.293102.179101.33510HepG2HNRNPM
WDR48ENSG00000114742.9997.510401212.23040-0.281303.018802.38760HepG2HNRNPU
WDR48ENSG00000114742.9812.729001574.45250-0.954004.290402.75170HepG2HSPD1
WDR48ENSG00000114742.9777.285201238.25640-0.6718016.1759014.57280HepG2ILF2
WDR48ENSG00000114742.9583.82480992.32930-0.765305.703903.75220HepG2ILF3
WDR48ENSG00000114742.9662.64860969.97440-0.549703.803402.36610HepG2KHDRBS1
WDR48ENSG00000114742.9957.362301152.47020-0.267603.010001.95050HepG2KIF1C
WDR48ENSG00000114742.91408.692902007.42500-0.511003.819002.83980HepG2LARP4
WDR48ENSG00000114742.91174.220501541.18930-0.392302.815502.15530HepG2MAGOH
WDR48ENSG00000114742.91236.061701549.86850-0.326401.893801.36660HepG2MATR3
WDR48ENSG00000114742.9645.733801006.12300-0.639803.916202.66910HepG2METAP2
WDR48ENSG00000114742.91104.783301511.45650-0.452205.819004.71790HepG2NOL12
WDR48ENSG00000114742.91266.373501014.824200.319402.220001.54760HepG2NSUN2
WDR48ENSG00000114742.9447.28400718.71280-0.684203.927302.01690HepG2PA2G4
WDR48ENSG00000114742.9900.129001413.00950-0.650606.512105.41650HepG2PABPC4
WDR48ENSG00000114742.9858.117401199.92430-0.483707.041005.78940HepG2PARN
WDR48ENSG00000114742.91096.336201429.27320-0.382605.042404.26040HepG2PCBP1
WDR48ENSG00000114742.9502.28430794.96160-0.662407.796505.81940HepG2PKM
WDR48ENSG00000114742.91350.72540907.783600.5732010.108308.76500HepG2PRPF4
WDR48ENSG00000114742.9929.37000736.807300.334902.196201.47370HepG2PRPF8
WDR48ENSG00000114742.91130.665101454.37010-0.363204.575503.91090HepG2PTBP1
WDR48ENSG00000114742.9981.136401442.81500-0.556406.662605.79080HepG2PUF60
WDR48ENSG00000114742.91275.125301531.60880-0.264403.595202.93700HepG2PUM1
WDR48ENSG00000114742.91173.499701530.49190-0.383204.125103.31360HepG2PUM2
WDR48ENSG00000114742.9901.179301284.14070-0.510909.020508.01390HepG2PUS1
WDR48ENSG00000114742.9724.582901209.94280-0.739704.361803.48740HepG2RAVER1
WDR48ENSG00000114742.92023.705001309.211300.6282012.5310011.59010HepG2RBM22
WDR48ENSG00000114742.91977.865201429.486300.468305.775804.83380HepG2RBM25
WDR48ENSG00000114742.9868.906901238.45910-0.511303.996202.78940HepG2RBM27
WDR48ENSG00000114742.91209.464401618.54840-0.420306.063705.31460HepG2NELFE
WDR48ENSG00000114742.9591.41000935.34060-0.661307.611906.65330HepG2RPS19
WDR48ENSG00000114742.9869.611501142.25560-0.393402.530901.76360HepG2RPS2
WDR48ENSG00000114742.9656.03230938.83320-0.517104.068402.93360HepG2SERBP1
WDR48ENSG00000114742.91264.003801514.13110-0.260502.704802.11920HepG2SF3B4
WDR48ENSG00000114742.9912.228301258.96360-0.464808.306807.28740HepG2SMN1
WDR48ENSG00000114742.92616.222301478.706400.8230029.4576028.27350HepG2SRFBP1
WDR48ENSG00000114742.91217.721101424.56600-0.226302.179201.61640HepG2SRSF5
WDR48ENSG00000114742.9554.80870889.21210-0.680505.244603.68500HepG2STIP1
WDR48ENSG00000114742.91194.568701620.12710-0.439607.970407.00570HepG2SUCLG1
WDR48ENSG00000114742.91114.944601420.63140-0.349603.899403.25210HepG2TAF15
WDR48ENSG00000114742.9569.675601177.97970-1.0481021.6419020.48910HepG2TIAL1
WDR48ENSG00000114742.9722.518101188.43330-0.7180014.8442013.68620HepG2TRIM56
WDR48ENSG00000114742.9498.56030763.89770-0.615604.384902.41480HepG2TROVE2
WDR48ENSG00000114742.91154.314201409.56420-0.288202.272801.48600HepG2TUFM
WDR48ENSG00000114742.9383.75670561.60620-0.549403.501102.65120HepG2UCHL5
WDR48ENSG00000114742.91156.229201473.37390-0.349704.975104.08130HepG2UPF1
WDR48ENSG00000114742.9847.587801422.48450-0.7470016.7902015.49910HepG2UTP3
WDR48ENSG00000114742.91191.84000895.827200.411806.174605.23330HepG2ZC3H8
WDR48ENSG00000114742.92751.697802127.727500.370906.706605.87920K562AGGF1
WDR48ENSG00000114742.92705.212502323.009500.219602.228201.41700K562ATP5C1
WDR48ENSG00000114742.91182.117701458.01080-0.302603.509502.42270K562BCLAF1
WDR48ENSG00000114742.91365.165601750.91540-0.359002.835301.95170K562BOP1
WDR48ENSG00000114742.91527.924501861.68300-0.285002.543401.79060K562CPSF6
WDR48ENSG00000114742.9914.828501106.11820-0.273902.282401.34070K562CSTF2
WDR48ENSG00000114742.92226.593602544.34730-0.192502.070901.49390K562DDX47
WDR48ENSG00000114742.92744.512002382.430200.204002.150501.38910K562DKC1
WDR48ENSG00000114742.91294.171301598.80990-0.305003.584302.18750K562EIF2S1
WDR48ENSG00000114742.9942.648401334.74460-0.501806.806605.57020K562EIF3G
WDR48ENSG00000114742.92171.331001713.592200.341501.911401.33590K562G3BP2
WDR48ENSG00000114742.91771.605802457.40020-0.472105.960904.84860K562GRSF1
WDR48ENSG00000114742.92181.496801773.797600.298403.353902.37260K562HNRNPU
WDR48ENSG00000114742.91977.823802790.69900-0.496705.783904.64800K562HSPD1
WDR48ENSG00000114742.93139.791902349.609200.418104.979103.80940K562KIF1C
WDR48ENSG00000114742.91139.845901517.77980-0.413102.435201.56560K562KRR1
WDR48ENSG00000114742.93433.239102632.154800.383204.385203.19080K562MBNL1
WDR48ENSG00000114742.91381.425401734.96990-0.328802.972502.06260K562METAP2
WDR48ENSG00000114742.92792.332603493.27410-0.323102.730501.60960K562MSI2
WDR48ENSG00000114742.91544.725501795.77700-0.217302.421001.66350K562MTPAP
WDR48ENSG00000114742.92669.020801844.949200.532603.493102.47570K562NAA15
WDR48ENSG00000114742.91834.396602336.70260-0.349202.977102.12160K562PPIG
WDR48ENSG00000114742.91612.256701189.414000.438703.938203.04470K562PRPF8
WDR48ENSG00000114742.91288.830801848.37260-0.520207.097006.07020K562PTBP1
WDR48ENSG00000114742.93218.202503726.58200-0.211602.239401.37410K562PUM2
WDR48ENSG00000114742.93013.119802195.690600.456504.731504.04600K562PUS1
WDR48ENSG00000114742.93115.650902139.357000.5423010.682909.54270K562RBM15
WDR48ENSG00000114742.91400.184501865.36310-0.413803.630402.35640K562NELFE
WDR48ENSG00000114742.93061.873901856.740000.721503.218601.85930K562SNRNP200
WDR48ENSG00000114742.91351.244101690.03550-0.322802.843101.77270K562SRSF4
WDR48ENSG00000114742.91192.539501833.94940-0.620907.422506.20080K562TARDBP
WDR48ENSG00000114742.91398.410701769.01880-0.339203.377002.46030K562TIA1
WDR48ENSG00000114742.9805.484901273.30670-0.660706.670505.16210K562TIAL1
WDR48ENSG00000114742.92533.925301660.922100.609306.251804.46540K562U2AF1
WDR48ENSG00000114742.92578.020401715.405600.5876010.386808.83170K562U2AF2
WDR48ENSG00000114742.91674.554102115.76030-0.337404.709903.79830K562UPF1
WDR48ENSG00000114742.92300.765202844.17730-0.305902.713801.86010K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for WDR48 is not available on ENCORE database.





9 RBPs can affect the splicing of WDR48 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEWDR48ENSG00000114742.9chr3+391073013910738039104540391046813910803839108121-0.260000.000000.00000excludedK562SF3B4
SEWDR48ENSG00000114742.9chr3+391082363910836639108038391081213911026139110350-0.095000.000150.00694excludedK562AKAP8L
SEWDR48ENSG00000114742.9chr3+391212013912129939118569391187043912564539125753-0.119000.000430.00595excludedK562AQR
SEWDR48ENSG00000114742.9chr3+391082363910836639108038391081213911026139110350-0.075000.000050.00100excludedK562AQR
SEWDR48ENSG00000114742.9chr3+391261353912623239125645391257533912700539127101-0.141000.000000.00000excludedK562AQR
SEWDR48ENSG00000114742.9chr3+391196273911973039118629391187043912120139121299-0.058000.000940.01609excludedK562PUS1
SEWDR48ENSG00000114742.9chr3+391082363910836639108038391081213911026139110350-0.063000.005990.07141excludedK562PUS1
SEWDR48ENSG00000114742.9chr3+3912779139127875391270053912710139129618391297240.077000.000000.00033includedK562EIF4G2
SEWDR48ENSG00000114742.9chr3+391073013910738039104540391046813910803839108121-0.079000.000250.01198excludedK562UTP18
SEWDR48ENSG00000114742.9chr3+391073013910738039104540391046813910803839108121-0.087000.000030.00146excludedK562RBM15
SEWDR48ENSG00000114742.9chr3+391082363910836639108038391081213911026139110350-0.071000.001920.04597excludedK562AGGF1
SEWDR48ENSG00000114742.9chr3+391082363910836639108038391081213911026139110350-0.078000.000640.09137excludedK562NPM1
A3SSWDR48ENSG00000114742.9chr3+3911024239110350391102613911035039108205391083660.080000.000000.00000longerK562AQR
A3SSWDR48ENSG00000114742.9chr3+3910728139107380391073013910738039104518391046810.073000.000010.00007longerK562AQR
A3SSWDR48ENSG00000114742.9chr3+3911860439118704391186293911870439116216391164410.051000.003090.01894longerK562AQR
A3SSWDR48ENSG00000114742.9chr3+3913308039133192391331153913319239130721391308090.069000.000000.00001longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for WDR48 is not avaliable on ENCORE database.