TRIM47

General Information

Gene Name       : TRIM47
Gene ID             : ENSG00000132481.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRIM47)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRIM47ENSG00000132481.60.533.101.81ENCSR000AEF
HepG2TRIM47ENSG00000132481.647.9826.5637.27ENCSR985KAT
K562TRIM47ENSG00000132481.62.431.311.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRIM47 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRIM47 RNA is bound by 16 proteins.  







eCLIP assay for TRIM47 is not avaliable on ENCORE database.





16 proteins are bound to TRIM47 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177387026573870343-3'-UTR,CDS,intron-Distal3.540773.38192HepG2PCBP2
chr177387387473873955-5'-UTR,intron-Distal3.0923111.35893HepG2BUD13
chr177387287373872940-5'-UTR,CDS,intron-Distal,intron-Proximal5.4812512.46940HepG2SF3B4
chr177387289673872942-5'-UTR,intron-Distal,intron-Proximal3.2746210.90434HepG2BUD13
chr177387284873872935-5'-UTR,CDS,intron-Distal,intron-Proximal3.421643.30948HepG2PRPF4
chr177387391073873961-5'-UTR,CDS,intron-Distal3.587754.40430HepG2AQR
chr177387462973874653-5'-UTR,intron-Distal4.703473.15149HepG2DDX3X
chr177387284173872946-5'-UTR,CDS,intron-Distal,intron-Proximal3.286626.89565HepG2AQR
chr177387389373873942-5'-UTR,intron-Distal4.160294.36329HepG2PRPF4
chr177387389873873963-5'-UTR,CDS,intron-Distal3.1723513.33793HepG2PRPF8
chr177387284473872896-5'-UTR,CDS,intron-Distal,intron-Proximal4.2397215.35739HepG2BUD13
chr177387285973872944-5'-UTR,CDS,intron-Distal,intron-Proximal4.3050414.35561HepG2SF3A3
chr177387154673871602-CDS,intron-Distal,intron-Proximal4.343467.26476HepG2AQR
chr177387147073871482-CDS,intron-Distal,intron-Proximal5.5629317.59192HepG2PRPF8
chr177387194873871985-CDS,intron-Distal,intron-Proximal4.548753.59236HepG2AQR
chr177387109373871148-CDS,intron-Distal4.097814.04622HepG2GRWD1
chr177387117973871270-CDS,intron-Distal4.4365713.20926HepG2AQR
chr177387232573872345-CDS,intron-Distal,intron-Proximal5.9579212.49766HepG2PRPF8
chr177387143673871484-CDS,intron-Distal,intron-Proximal4.266933.66903HepG2SUPV3L1
chr177387194373871999-CDS,intron-Distal,intron-Proximal3.417767.41042HepG2EFTUD2
chr177387455273874604-CDS,intron-Distal3.973755.01580HepG2DDX3X
chr177387196173871985-CDS,intron-Distal,intron-Proximal4.3250016.82955HepG2PRPF8
chr177387119873871257-CDS,intron-Distal5.1430211.30153HepG2EFTUD2
chr177387152073871601-CDS,intron-Distal,intron-Proximal3.050976.53290HepG2BUD13
chr177387148073871548-CDS,intron-Distal,intron-Proximal4.258063.11282HepG2G3BP1
chr177387120173871267-CDS,intron-Distal3.777567.15565HepG2BUD13
chr177387194873872069-CDS,intron-Distal,intron-Proximal3.201138.29327HepG2PPIG
chr177387241973872483-CDS,intron-Distal,intron-Proximal3.808103.08156HepG2SRSF7
chr177387276473872814-CDS,intron-Distal,intron-Proximal4.6837111.58765HepG2PRPF8
chr177387220773872289-intron-Distal,intron-Proximal3.096646.76432HepG2PRPF8
chr177387361773873707-intron-Distal3.389578.28631HepG2PRPF4
chr177387362173873738-intron-Distal3.669677.66564HepG2RBFOX2
chr177387143873871481-intron-Distal,intron-Proximal6.4447622.18136HepG2AQR
chr177387192773871961-intron-Distal,intron-Proximal4.0811115.18162HepG2PRPF8
chr177387360573873669-intron-Distal3.4995412.46325HepG2EFTUD2
chr177387220873872308-intron-Distal,intron-Proximal5.7715526.84320HepG2RBFOX2
chr177387361373873717-intron-Distal3.123894.83318HepG2GTF2F1
chr177387121873871269-intron-Distal3.798783.01266HepG2SF3B4
chr177387221673872287-intron-Distal,intron-Proximal5.7159212.86303HepG2AQR
chr177387140073871434-intron-Distal,intron-Proximal3.199005.56310HepG2PRPF8
chr177387143473871470-intron-Distal,intron-Proximal4.9013021.78825HepG2PRPF8
chr177387343573873499-intron-Distal,intron-Proximal3.493344.25955HepG2RBFOX2
chr177387353073873575-intron-Distal3.094193.68924HepG2PRPF4
chr177387258773872643-intron-Distal,intron-Proximal4.324423.56713HepG2SF3B4
chr177387222473872292-intron-Distal,intron-Proximal3.448848.20183HepG2EFTUD2
chr177387222373872330-intron-Distal,intron-Proximal4.3907611.11720HepG2PRPF4
chr177387230273872325-intron-Distal,intron-Proximal5.6663212.66198HepG2PRPF8
chr177387189873871925-intron-Distal,intron-Proximal4.238114.44312HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRIM47 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRIM47 is not available on ENCORE database.

  • 79 RBPs can affect the levels of TRIM47.  








The Knockdown/knockout RNA-Seq assay for TRIM47 is not available on ENCORE database.





79 RBPs can affect the gene expression of TRIM47 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRIM47ENSG00000132481.2256.75360433.43880-0.755404.482303.14800HepG2AATF
TRIM47ENSG00000132481.21442.43790983.592200.552304.894003.67550HepG2ABCF1
TRIM47ENSG00000132481.2686.41090845.46490-0.300702.833802.21970HepG2ACO1
TRIM47ENSG00000132481.2627.36220344.978600.862708.805607.15400HepG2ADAR
TRIM47ENSG00000132481.2367.561101066.28090-1.536503.967703.34780HepG2AKAP1
TRIM47ENSG00000132481.21020.37380849.366600.264502.374201.65800HepG2AKAP8L
TRIM47ENSG00000132481.2719.074101149.77620-0.6771012.1146010.85480HepG2AUH
TRIM47ENSG00000132481.2255.87770410.43430-0.681704.746203.98860HepG2BOP1
TRIM47ENSG00000132481.2296.09330510.33300-0.785407.268606.09770HepG2CALR
TRIM47ENSG00000132481.2483.94370353.770700.451903.361702.23950HepG2YBX3
TRIM47ENSG00000132481.2251.30840443.97090-0.821005.159503.11590HepG2CSTF2T
TRIM47ENSG00000132481.2482.59490597.84090-0.308902.195101.61250HepG2CELF1
TRIM47ENSG00000132481.21076.73910781.895000.461507.296406.05100HepG2DDX19B
TRIM47ENSG00000132481.21253.42900808.858900.6318011.169109.99720HepG2DKC1
TRIM47ENSG00000132481.2571.71680347.377600.718708.211807.05290HepG2DNAJC21
TRIM47ENSG00000132481.2534.91960344.308300.635507.615106.60590HepG2DNAJC2
TRIM47ENSG00000132481.21165.50530580.103101.0065013.4271011.63510HepG2EEF2
TRIM47ENSG00000132481.2641.65900451.430900.507204.331603.01620HepG2EIF3G
TRIM47ENSG00000132481.21031.673601320.15530-0.355704.735803.98800HepG2ETF1
TRIM47ENSG00000132481.2326.14180455.50250-0.482003.001801.81390HepG2FASTKD2
TRIM47ENSG00000132481.2647.14870993.18270-0.618004.358803.40950HepG2FIP1L1
TRIM47ENSG00000132481.2489.91180942.68560-0.9443014.0478012.33580HepG2FUBP3
TRIM47ENSG00000132481.2720.71910427.103400.754806.252005.31570HepG2GPKOW
TRIM47ENSG00000132481.2631.79890376.240800.747702.748801.38410HepG2HNRNPA0
TRIM47ENSG00000132481.2665.21380350.705500.9235010.602509.46110HepG2HNRNPA1
TRIM47ENSG00000132481.2856.15370625.449000.452904.195703.33240HepG2HNRNPF
TRIM47ENSG00000132481.2768.76940585.610100.392504.110203.30100HepG2HNRNPL
TRIM47ENSG00000132481.2544.76390387.515400.491304.606203.84040HepG2HNRNPU
TRIM47ENSG00000132481.2896.92660615.885200.542205.746804.74190HepG2IGF2BP1
TRIM47ENSG00000132481.2711.09530423.876900.746302.790501.59510HepG2KHDRBS1
TRIM47ENSG00000132481.2959.68890772.808200.312403.478702.33620HepG2KIF1C
TRIM47ENSG00000132481.21482.954501072.952300.466803.108502.22490HepG2LARP4
TRIM47ENSG00000132481.21519.34360941.171400.690802.598701.96260HepG2MAGOH
TRIM47ENSG00000132481.2316.34700492.74860-0.639302.432601.44380HepG2METAP2
TRIM47ENSG00000132481.2651.68550337.979900.947105.175603.21880HepG2NIP7
TRIM47ENSG00000132481.2783.30660637.459500.297102.009701.35700HepG2NOL12
TRIM47ENSG00000132481.2342.33700206.779100.727203.491901.87070HepG2NOLC1
TRIM47ENSG00000132481.2673.81190406.125000.730302.442501.61850HepG2PABPC1
TRIM47ENSG00000132481.2720.53000895.72720-0.314002.997302.36930HepG2PCBP1
TRIM47ENSG00000132481.2582.47510389.395500.580905.181103.51880HepG2PKM
TRIM47ENSG00000132481.21114.03030766.553400.539203.802701.71280HepG2PPIG
TRIM47ENSG00000132481.2667.00570345.632900.9484014.7180013.09330HepG2PPIL4
TRIM47ENSG00000132481.2628.91150911.42630-0.535307.241106.43750HepG2PTBP1
TRIM47ENSG00000132481.21091.15590608.500600.8424012.0807010.95390HepG2PUF60
TRIM47ENSG00000132481.2845.51670645.938100.388304.519703.80190HepG2PUM1
TRIM47ENSG00000132481.21035.02220645.473800.681103.662702.89630HepG2PUM2
TRIM47ENSG00000132481.2380.97070987.11760-1.3735031.0525029.31270HepG2QKI
TRIM47ENSG00000132481.2375.70960197.590400.927005.447702.89370HepG2RBM14
TRIM47ENSG00000132481.2498.378901103.39330-1.1466025.7055024.44880HepG2RBM22
TRIM47ENSG00000132481.2651.71190895.86500-0.459003.727802.95220HepG2RBM25
TRIM47ENSG00000132481.2857.41390450.842800.927304.291403.03980HepG2RBM27
TRIM47ENSG00000132481.2768.72150366.108301.070106.520704.88670HepG2RCC2
TRIM47ENSG00000132481.2700.75020415.723300.753202.682101.89360HepG2RPS2
TRIM47ENSG00000132481.2772.84750446.626700.791003.071902.23020HepG2RPS3A
TRIM47ENSG00000132481.2586.92240345.100000.7661010.412509.28600HepG2SAFB2
TRIM47ENSG00000132481.2797.19250948.92960-0.251402.036101.51700HepG2SF3B4
TRIM47ENSG00000132481.2956.99970583.432400.7139013.3997012.05360HepG2SLBP
TRIM47ENSG00000132481.2663.72600402.445500.7217010.818809.68060HepG2SMN1
TRIM47ENSG00000132481.2546.445501246.22070-1.1894036.3175035.04290HepG2SRFBP1
TRIM47ENSG00000132481.2751.73740990.47000-0.397904.398103.83550HepG2SRSF1
TRIM47ENSG00000132481.2749.31750614.495300.286102.206501.57720HepG2SRSF7
TRIM47ENSG00000132481.2545.56200805.79410-0.562707.692606.85700HepG2SRSF9
TRIM47ENSG00000132481.22065.454401081.977000.9327031.8314030.52670HepG2SSB
TRIM47ENSG00000132481.2934.21190683.277500.451205.748304.91190HepG2SUCLG1
TRIM47ENSG00000132481.2373.83990890.25360-1.2518026.4552024.95280HepG2TAF15
TRIM47ENSG00000132481.2624.16720818.04250-0.390203.311802.40130HepG2TIA1
TRIM47ENSG00000132481.2712.01980376.545900.9190012.8058011.86550HepG2TIAL1
TRIM47ENSG00000132481.2483.43330379.909500.347602.430801.89530HepG2TRIM56
TRIM47ENSG00000132481.21285.43780594.459601.112508.734207.03060HepG2TUFM
TRIM47ENSG00000132481.2860.328201049.62190-0.286902.620102.03550HepG2UTP3
TRIM47ENSG00000132481.21122.28380498.870401.169606.503805.40850HepG2XRN2
TRIM47ENSG00000132481.2338.31140506.42990-0.582005.769604.85450HepG2ZC3H8
TRIM47ENSG00000132481.2102.0815063.121400.693401.961801.40900K562AKAP8L
TRIM47ENSG00000132481.283.6896039.079101.098603.192102.16320K562BCLAF1
TRIM47ENSG00000132481.228.2140058.07670-1.041502.308901.74820K562FXR1
TRIM47ENSG00000132481.262.2204026.075301.254603.522902.13800K562IGF2BP3
TRIM47ENSG00000132481.257.9173026.933701.104502.628401.80900K562MAGOH
TRIM47ENSG00000132481.258.7147097.17030-0.726802.020701.32460K562MTPAP
TRIM47ENSG00000132481.220.4914051.42950-1.327602.639901.82980K562PCBP3
TRIM47ENSG00000132481.2148.3995085.071100.802603.184001.50360K562PKM
TRIM47ENSG00000132481.211.5137039.44950-1.776703.325802.44300K562POLR2G
TRIM47ENSG00000132481.267.9295036.275800.904902.148201.42970K562PPIG
TRIM47ENSG00000132481.251.1980026.168900.968102.049301.46170K562PTBP1
TRIM47ENSG00000132481.253.7560025.044101.101902.341101.59590K562TIA1
TRIM47ENSG00000132481.254.9864024.584301.161202.508101.47890K562TRA2A
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRIM47 is not available on ENCORE database.






No RBPs affect the alternative splcing events of TRIM47 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TRIM47 is not avaliable on ENCORE database.