TMEM120A

General Information

Gene Name       : TMEM120A
Gene ID             : ENSG00000189077.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM120A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM120AENSG00000189077.1011.7811.6211.70ENCSR000AEF
HepG2TMEM120AENSG00000189077.1083.2640.1761.72ENCSR985KAT
K562TMEM120AENSG00000189077.1028.5421.6025.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM120A is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM120A RNA is bound by 13 proteins.  







eCLIP assay for TMEM120A is not avaliable on ENCORE database.





13 proteins are bound to TMEM120A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr77562184875621870-CDS,intron-Distal,intron-Proximal4.186453.49332HepG2PPIG
chr77561705475617109-CDS,intron-Distal,intron-Proximal3.058953.55882K562IGF2BP2
chr77562382675623917-CDS,intron-Distal,intron-Proximal4.3521816.72391HepG2DDX3X
chr77562380675623941-CDS,intron-Distal,intron-Proximal4.806115.07098K562DDX3X
chr77561770875617759-CDS,intron-Distal,intron-Proximal5.416549.06713HepG2PRPF8
chr77561651975616579-CDS,intron-Distal,intron-Proximal3.001203.06957K562DDX55
chr77561848575618537-CDS,intron-Distal3.953166.06308HepG2PPIG
chr77561650875616573-CDS,intron-Distal3.267513.55700HepG2LARP4
chr77561748975617571-CDS,intron-Distal,intron-Proximal4.0452910.21736HepG2PRPF8
chr77561774175617802-CDS,intron-Distal,intron-Proximal3.313404.74241K562YBX3
chr77562379275623809-CDS,intron-Distal4.259719.08333HepG2PRPF8
chr77561789575617943-intron-Distal,intron-Proximal4.929954.35687HepG2DDX59
chr77561640475616460-intron-Distal,intron-Proximal4.587964.62617K562PABPC4
chr77561859275618656-intron-Distal,intron-Proximal3.223823.96999HepG2CSTF2T
chr77561947275619530-intron-Distal3.962683.84437HepG2PRPF4
chr77562321875623274-intron-Distal4.803586.70034HepG2CSTF2T
chr77561784775617969-intron-Distal,intron-Proximal3.476993.37567HepG2HNRNPK
chr77561786075617990-intron-Distal,intron-Proximal6.5361020.37315HepG2PCBP2
chr77561633975616400-intron-Distal,intron-Proximal3.929473.46680HepG2DDX55
chr77561838175618410-intron-Distal,intron-Proximal4.724634.05003HepG2PCBP2
chr77562376275623792-intron-Distal4.0227410.64040HepG2PRPF8
chr77561632775616404-intron-Distal,intron-Proximal5.4832913.91354K562PABPC4
chr77561639575616475-intron-Distal,intron-Proximal4.226738.03601HepG2LARP4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM120A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM120A is not available on ENCORE database.

  • 88 RBPs can affect the levels of TMEM120A.  








The Knockdown/knockout RNA-Seq assay for TMEM120A is not available on ENCORE database.





88 RBPs can affect the gene expression of TMEM120A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM120AENSG00000189077.6229.17370345.46510-0.592103.357202.18280HepG2AATF
TMEM120AENSG00000189077.6875.42070603.916500.535503.739102.65230HepG2ABCF1
TMEM120AENSG00000189077.6388.31190513.91600-0.404303.290202.63680HepG2ACO1
TMEM120AENSG00000189077.6637.82000930.76410-0.545303.685203.08360HepG2AKAP1
TMEM120AENSG00000189077.6411.49800516.29210-0.327302.254101.55450HepG2AKAP8L
TMEM120AENSG00000189077.6595.61140760.01750-0.351703.063102.34620HepG2AUH
TMEM120AENSG00000189077.6335.56750513.75810-0.614506.753105.79760HepG2CKAP4
TMEM120AENSG00000189077.6201.89120387.55480-0.940802.946902.15550HepG2CNOT7
TMEM120AENSG00000189077.6369.99320221.691300.738803.154802.42560HepG2CPSF6
TMEM120AENSG00000189077.6205.26440353.80620-0.785504.345802.50320HepG2CSTF2T
TMEM120AENSG00000189077.6531.06930891.56260-0.747407.066006.10800HepG2DDX3X
TMEM120AENSG00000189077.6679.96420458.096500.569704.518903.24250HepG2DDX5
TMEM120AENSG00000189077.6826.02680491.666400.7484011.3942010.21380HepG2DKC1
TMEM120AENSG00000189077.61424.91250813.595700.808408.598007.47380HepG2EIF4A3
TMEM120AENSG00000189077.6513.22060792.23370-0.626303.797802.99720HepG2EIF4B
TMEM120AENSG00000189077.6360.93440502.14670-0.476403.299202.38800HepG2EWSR1
TMEM120AENSG00000189077.6350.20400609.81390-0.800205.238004.20720HepG2FIP1L1
TMEM120AENSG00000189077.6644.76220821.01730-0.348602.009901.41680HepG2FXR1
TMEM120AENSG00000189077.6457.21140761.54380-0.736106.406005.41570HepG2G3BP1
TMEM120AENSG00000189077.6524.47260251.279301.061508.385007.31420HepG2GPKOW
TMEM120AENSG00000189077.6465.82460771.29580-0.727506.985005.91190HepG2HNRNPK
TMEM120AENSG00000189077.6419.05190239.802700.805205.641104.77590HepG2HNRNPLL
TMEM120AENSG00000189077.6248.28640340.68410-0.456402.851302.23620HepG2HNRNPU
TMEM120AENSG00000189077.6693.34890503.970700.460103.827602.98640HepG2IGF2BP1
TMEM120AENSG00000189077.6283.57590726.52960-1.357305.970804.55250HepG2IGF2BP3
TMEM120AENSG00000189077.6424.67410778.62640-0.874607.279405.56670HepG2KHSRP
TMEM120AENSG00000189077.6524.85550825.87960-0.654004.993504.16770HepG2MATR3
TMEM120AENSG00000189077.6470.87420845.31600-0.844108.372107.29970HepG2NCBP2
TMEM120AENSG00000189077.6572.65850354.365100.692303.469402.46750HepG2PABPC1
TMEM120AENSG00000189077.6476.17140752.72810-0.660605.412804.41400HepG2PABPC4
TMEM120AENSG00000189077.6495.51400756.81620-0.611008.026007.08040HepG2PCBP1
TMEM120AENSG00000189077.6421.72930303.862000.472803.403702.59330HepG2PPIL4
TMEM120AENSG00000189077.6219.05230319.54310-0.544702.689001.89180HepG2PRPF8
TMEM120AENSG00000189077.6388.85360770.08770-0.9858018.1593016.98940HepG2PTBP1
TMEM120AENSG00000189077.6855.52440523.822900.707605.062104.28520HepG2PUF60
TMEM120AENSG00000189077.6356.36480555.65790-0.640805.749804.79460HepG2PUM2
TMEM120AENSG00000189077.6586.02700834.02640-0.509105.175004.36020HepG2QKI
TMEM120AENSG00000189077.6465.13240729.34980-0.649007.257606.51040HepG2RBM22
TMEM120AENSG00000189077.6451.02440756.93160-0.747008.586807.44980HepG2RBM25
TMEM120AENSG00000189077.6524.34580350.378600.581503.123401.99520HepG2RCC2
TMEM120AENSG00000189077.6443.22510857.03460-0.9513016.9367015.81750HepG2NELFE
TMEM120AENSG00000189077.6633.76710798.20950-0.332802.862002.23660HepG2RECQL
TMEM120AENSG00000189077.6752.60690551.348000.448802.258901.63270HepG2RPLP0
TMEM120AENSG00000189077.6596.66560342.157600.802205.214203.93920HepG2RPS10
TMEM120AENSG00000189077.6542.63080303.390800.8387011.4449010.27360HepG2SAFB2
TMEM120AENSG00000189077.6502.58340801.76270-0.673809.222708.24020HepG2SF3B4
TMEM120AENSG00000189077.6650.20700502.280700.372303.496802.72310HepG2SLBP
TMEM120AENSG00000189077.6287.34120823.76420-1.5195040.0167038.69070HepG2SRFBP1
TMEM120AENSG00000189077.6582.79080836.86580-0.522006.259705.61920HepG2SRSF1
TMEM120AENSG00000189077.6388.87860680.83420-0.8080012.4276011.40560HepG2SRSF9
TMEM120AENSG00000189077.61513.27860715.205801.0811032.6941031.37430HepG2SSB
TMEM120AENSG00000189077.6593.80720752.20530-0.341102.575902.03330HepG2TAF15
TMEM120AENSG00000189077.6533.20200691.17670-0.374402.795801.95480HepG2TIA1
TMEM120AENSG00000189077.6680.21120331.015801.0390015.2805014.27270HepG2TIAL1
TMEM120AENSG00000189077.6458.76460333.999000.457803.647803.01910HepG2TRIM56
TMEM120AENSG00000189077.6279.60020521.66430-0.899807.546906.51480HepG2U2AF1
TMEM120AENSG00000189077.6355.87700540.15170-0.602005.973805.15010HepG2UTP3
TMEM120AENSG00000189077.6201.01210342.50790-0.768902.727301.47600HepG2XRCC5
TMEM120AENSG00000189077.6634.80530406.005200.644704.254403.36200HepG2XRN2
TMEM120AENSG00000189077.6480.86180380.539800.337502.396401.76540HepG2ZC3H8
TMEM120AENSG00000189077.6734.41630615.316200.255202.134601.63620HepG2ZNF622
TMEM120AENSG00000189077.6932.73910624.557100.578508.130407.22770K562AGGF1
TMEM120AENSG00000189077.6959.98220686.300200.484104.482503.15810K562AKAP8
TMEM120AENSG00000189077.6845.10130649.881500.378802.793802.13730K562AKAP8L
TMEM120AENSG00000189077.6410.50010698.41400-0.766706.626605.78230K562AQR
TMEM120AENSG00000189077.6522.77890341.041700.616202.732001.68040K562CNOT7
TMEM120AENSG00000189077.6283.84180184.664300.620103.532302.64560K562CPSF6
TMEM120AENSG00000189077.6842.44480699.309300.268602.146801.38610K562DKC1
TMEM120AENSG00000189077.6197.75340311.23700-0.654303.807602.21380K562DNAJC21
TMEM120AENSG00000189077.6413.68990301.238800.457502.207501.39220K562EFTUD2
TMEM120AENSG00000189077.6154.41350294.40240-0.931004.205002.93940K562EIF3A
TMEM120AENSG00000189077.6267.02490388.79030-0.542003.358102.45670K562EIF4A3
TMEM120AENSG00000189077.6499.05420713.76440-0.516302.483701.59000K562EIF4G2
TMEM120AENSG00000189077.6398.62030262.294200.603703.955602.93040K562FIP1L1
TMEM120AENSG00000189077.6206.11520342.46420-0.732503.696402.36690K562FKBP4
TMEM120AENSG00000189077.6256.88830404.32710-0.654405.249804.45400K562FXR1
TMEM120AENSG00000189077.673.14140194.95170-1.414403.167002.40230K562G3BP2
TMEM120AENSG00000189077.6774.41630607.448200.350202.255401.56990K562GRSF1
TMEM120AENSG00000189077.6639.39710376.824400.762703.142501.81870K562HNRNPA2B1
TMEM120AENSG00000189077.6217.59670393.96850-0.856406.949006.04320K562HNRNPC
TMEM120AENSG00000189077.6234.01200351.93630-0.588703.583802.26960K562HNRNPF
TMEM120AENSG00000189077.6341.21310215.735800.661303.253602.23680K562HNRNPM
TMEM120AENSG00000189077.6409.68910593.05050-0.533604.849003.65540K562HNRNPU
TMEM120AENSG00000189077.6581.38270355.622200.709005.843804.70070K562HSPD1
TMEM120AENSG00000189077.6760.61690329.518601.206707.154505.30830K562PABPN1
TMEM120AENSG00000189077.6220.60800413.74060-0.907206.810305.50330K562PCBP3
TMEM120AENSG00000189077.6185.02240317.35500-0.778405.562104.42820K562POLR2G
TMEM120AENSG00000189077.6533.92080297.748700.842407.980406.42520K562PPIG
TMEM120AENSG00000189077.6753.82730391.666400.944504.163102.23810K562PPP1R8
TMEM120AENSG00000189077.6893.41570644.493100.471103.877303.24950K562PUS1
TMEM120AENSG00000189077.6868.41460627.970600.467604.824904.06200K562RBM15
TMEM120AENSG00000189077.6566.89890301.297700.911803.278301.93930K562SF1
TMEM120AENSG00000189077.6665.84580367.234700.858403.551802.00610K562SFPQ
TMEM120AENSG00000189077.6373.14790498.11510-0.416703.262802.25530K562SRPK2
TMEM120AENSG00000189077.6385.44380274.003900.492202.325201.37600K562SRSF5
TMEM120AENSG00000189077.6398.75620283.130600.493903.034702.16980K562TIA1
TMEM120AENSG00000189077.6356.16380464.85790-0.384202.816201.96270K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM120A is not available on ENCORE database.





17 RBPs can affect the splicing of TMEM120A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM120AENSG00000189077.6chr7-7561685575616920756164677561674675617035756171280.184000.002980.05029includedK562SRSF1
SETMEM120AENSG00000189077.6chr7-756168557561692075616467756167467561703575617128-0.363000.000950.03589excludedK562PRPF8
SETMEM120AENSG00000189077.6chr7-756168557561692075616467756167467561703575617128-0.385000.000000.00000excludedHepG2U2AF1
SETMEM120AENSG00000189077.6chr7-756168557561692075616467756167467561703575617128-0.320000.000090.01252excludedHepG2PRPF8
SETMEM120AENSG00000189077.6chr7-756168557561692075616467756167467561703575617128-0.483000.000000.00000excludedHepG2U2AF2
SETMEM120AENSG00000189077.6chr7-756168557561692075616467756167467561703575617128-0.196000.000600.00792excludedK562AQR
SETMEM120AENSG00000189077.6chr7-756168557561692075616467756167467561703575617128-0.534000.000000.00001excludedK562EFTUD2
SETMEM120AENSG00000189077.6chr7-756168557561692075616467756167467561703575617128-0.144000.000100.00740excludedHepG2PCBP1
SETMEM120AENSG00000189077.6chr7-756168557561692075616467756167467561703575617128-0.507000.000000.00000excludedK562HNRNPC
A3SSTMEM120AENSG00000189077.6chr7-756163027561660375616302756165417561667775616909-0.234000.000000.00001shorterHepG2U2AF1
RITMEM120AENSG00000189077.6chr7-7561740075617659756174007561746675617569756176590.269000.000000.00018includedK562SF3B4
RITMEM120AENSG00000189077.6chr7-756174007561765975617400756174667561756975617659-0.063000.000520.03683excludedHepG2TBRG4
RITMEM120AENSG00000189077.6chr7-7561740075617659756174007561746675617569756176590.165000.000000.00002includedHepG2SF3A3
RITMEM120AENSG00000189077.6chr7-756174007561765975617400756174667561756975617659-0.055000.001420.04699excludedHepG2TIA1
RITMEM120AENSG00000189077.6chr7-756174007561765975617400756174667561756975617659-0.172000.000550.03559excludedHepG2HNRNPUL1
RITMEM120AENSG00000189077.6chr7-756174007561765975617400756174667561756975617659-0.079000.007610.07248excludedK562AGGF1
RITMEM120AENSG00000189077.6chr7-7561740075617659756174007561746675617569756176590.202000.000780.01188includedK562PRPF8
RITMEM120AENSG00000189077.6chr7-756174007561765975617400756174667561756975617659-0.055000.000100.00387excludedHepG2SRSF1
RITMEM120AENSG00000189077.6chr7-7561667775616909756166777561674675616855756169090.099000.000010.00023includedHepG2U2AF1
RITMEM120AENSG00000189077.6chr7-7561740075617659756174007561746675617569756176590.292000.000000.00000includedHepG2U2AF1
RITMEM120AENSG00000189077.6chr7-7561762375617834756176237561765975617738756178340.059000.001900.06847includedK562SUPV3L1
RITMEM120AENSG00000189077.6chr7-7561667775616909756166777561674675616855756169090.055000.000640.00642includedHepG2SF3B4
RITMEM120AENSG00000189077.6chr7-7561740075617659756174007561746675617569756176590.090000.000510.00536includedHepG2SF3B4
RITMEM120AENSG00000189077.6chr7-7561740075617659756174007561746675617569756176590.249000.000000.00007includedK562EFTUD2
RITMEM120AENSG00000189077.6chr7-7561667775616909756166777561674675616855756169090.101000.000540.00388includedK562AQR
RITMEM120AENSG00000189077.6chr7-7561740075617659756174007561746675617569756176590.237000.000000.00001includedK562AQR
RITMEM120AENSG00000189077.6chr7-7561740075617659756174007561746675617569756176590.163000.000560.01184includedK562FXR1
MXETMEM120AENSG00000189077.6chr7-75618482756185427562146175621578756177387561783475621756756218750.167000.001010.027011includedK562TARDBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM120A is not avaliable on ENCORE database.