TFAP4

General Information

Gene Name       : TFAP4
Gene ID             : ENSG00000090447.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TFAP4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TFAP4ENSG00000090447.111.784.793.29ENCSR000AEF
HepG2TFAP4ENSG00000090447.1120.437.7314.08ENCSR985KAT
K562TFAP4ENSG00000090447.119.847.148.49ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TFAP4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TFAP4 RNA is bound by 9 proteins.  







eCLIP assay for TFAP4 is not avaliable on ENCORE database.





9 proteins are bound to TFAP4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1643077824307923-3'-UTR,intron-Distal3.173643.12067K562FAM120A
chr1643105074310607-3'-UTR,CDS,intron-Distal,intron-Proximal4.308413.79199HepG2PPIG
chr1643075444307615-3'-UTR,intron-Distal3.695967.55751K562UPF1
chr1643072254307313-3'-UTR,intron-Distal4.428954.92816K562CPEB4
chr1643075204307603-3'-UTR,intron-Distal3.191533.20756HepG2UPF1
chr1643077944307863-3'-UTR,intron-Distal3.754164.98444HepG2GRSF1
chr1643077844307912-3'-UTR,intron-Distal5.172498.87118HepG2UPF1
chr1643075714307627-3'-UTR,intron-Distal3.365094.50192K562FAM120A
chr1643122834312329-CDS,intron-Distal,intron-Proximal4.022745.34978HepG2PRPF8
chr1643123354312399-CDS,intron-Distal3.891863.38114HepG2GRWD1
chr1643220424322109-intron-Distal4.3971110.59961HepG2CSTF2T
chr1643134464313511-intron-Distal3.723703.07008K562NONO
chr1643225804322626-intron-Distal3.277283.92299HepG2CSTF2T
chr1643139954314047-intron-Distal4.098053.87340HepG2CSTF2T
chr1643134554313537-intron-Distal3.524394.60046HepG2CSTF2T
chr1643219194321975-intron-Distal4.266904.10339HepG2CSTF2T
chr1643220124322102-intron-Distal4.295893.53896K562NONO
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TFAP4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TFAP4 is not available on ENCORE database.

  • 93 RBPs can affect the levels of TFAP4.  








The Knockdown/knockout RNA-Seq assay for TFAP4 is not available on ENCORE database.





93 RBPs can affect the gene expression of TFAP4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TFAP4ENSG00000090447.7193.63140295.59800-0.610304.272103.54790HepG2ACO1
TFAP4ENSG00000090447.7212.92610129.295500.719603.463902.35920HepG2ADAR
TFAP4ENSG00000090447.7166.15610343.52580-1.047906.752105.96200HepG2AKAP1
TFAP4ENSG00000090447.7142.69400280.61220-0.975706.209104.68140HepG2AKAP8
TFAP4ENSG00000090447.7210.65390296.97640-0.495502.954002.16280HepG2AKAP8L
TFAP4ENSG00000090447.7244.79430400.34670-0.709702.796602.10740HepG2AUH
TFAP4ENSG00000090447.769.54490144.71340-1.057204.552303.42490HepG2BCLAF1
TFAP4ENSG00000090447.7109.58490213.21740-0.960305.197704.40910HepG2BOP1
TFAP4ENSG00000090447.790.90110237.23780-1.3840010.250408.90660HepG2CALR
TFAP4ENSG00000090447.7198.53970132.592100.582302.695301.69200HepG2YBX3
TFAP4ENSG00000090447.788.06050151.62850-0.784002.668201.34940HepG2CSTF2T
TFAP4ENSG00000090447.761.34550163.17870-1.411407.977606.88680HepG2DDX21
TFAP4ENSG00000090447.790.83080153.21680-0.754302.704201.42910HepG2DDX27
TFAP4ENSG00000090447.7133.61520329.04640-1.3002010.533109.38620HepG2DDX3X
TFAP4ENSG00000090447.796.73910163.77850-0.759602.814302.03490HepG2DDX55
TFAP4ENSG00000090447.7167.10600292.80930-0.809205.087303.74910HepG2DDX5
TFAP4ENSG00000090447.7157.70940282.71730-0.842104.454903.68620HepG2DDX6
TFAP4ENSG00000090447.7193.89580282.80400-0.544503.096902.38610HepG2DKC1
TFAP4ENSG00000090447.766.24940150.36490-1.182505.305603.77520HepG2AGO1
TFAP4ENSG00000090447.7116.20030271.72380-1.225508.455207.45720HepG2EIF2S1
TFAP4ENSG00000090447.7105.79910300.25810-1.5049012.6068011.27030HepG2EIF4A3
TFAP4ENSG00000090447.7204.44650288.84100-0.498602.553101.75120HepG2EWSR1
TFAP4ENSG00000090447.7190.77600407.78780-1.095907.786006.56580HepG2FIP1L1
TFAP4ENSG00000090447.7110.89910199.83020-0.849503.602702.32950HepG2FUS
TFAP4ENSG00000090447.7149.32240281.06330-0.912505.531404.60430HepG2G3BP1
TFAP4ENSG00000090447.788.17490155.53740-0.818802.977301.91970HepG2GNB2L1
TFAP4ENSG00000090447.7141.47550221.88900-0.649302.591501.96900HepG2GPKOW
TFAP4ENSG00000090447.788.45030191.84600-1.117004.593702.77190HepG2HLTF
TFAP4ENSG00000090447.772.14180131.43950-0.865502.931302.26800HepG2HNRNPA1
TFAP4ENSG00000090447.7141.02620224.04860-0.667803.762302.69840HepG2HNRNPA2B1
TFAP4ENSG00000090447.7422.23630284.708600.568503.316002.55360HepG2HNRNPK
TFAP4ENSG00000090447.7302.41260222.095000.445202.465501.82480HepG2HNRNPL
TFAP4ENSG00000090447.790.09330211.75300-1.232907.026306.07640HepG2HNRNPLL
TFAP4ENSG00000090447.7197.15260281.37650-0.513202.479201.57600HepG2HNRNPM
TFAP4ENSG00000090447.7145.36460285.67850-0.974706.293905.31380HepG2IGF2BP2
TFAP4ENSG00000090447.7271.07080482.72510-0.832505.625804.42790HepG2LARP4
TFAP4ENSG00000090447.7166.14180303.14070-0.867605.265704.36670HepG2MAGOH
TFAP4ENSG00000090447.7125.14030330.06920-1.3992013.2924011.66340HepG2MSI2
TFAP4ENSG00000090447.7136.09110215.96590-0.666202.254501.38470HepG2MTPAP
TFAP4ENSG00000090447.7179.81730311.99210-0.795004.545003.74330HepG2NCBP2
TFAP4ENSG00000090447.7330.20420241.753500.449702.395201.68720HepG2NOL12
TFAP4ENSG00000090447.7156.60470277.79660-0.826904.728303.79590HepG2PABPC4
TFAP4ENSG00000090447.7121.39660189.14280-0.639702.268901.32590HepG2PCBP2
TFAP4ENSG00000090447.7268.72530129.539501.052608.955507.67490HepG2PPIL4
TFAP4ENSG00000090447.752.29160126.28850-1.272105.184104.11320HepG2PRPF8
TFAP4ENSG00000090447.7167.66160269.46060-0.684504.415003.75870HepG2PTBP1
TFAP4ENSG00000090447.7138.16550230.76690-0.740003.939403.24210HepG2PUF60
TFAP4ENSG00000090447.7342.85370244.960000.484903.207102.57950HepG2PUM1
TFAP4ENSG00000090447.7155.93610301.08390-0.949208.855207.85700HepG2PUS1
TFAP4ENSG00000090447.7208.85950291.79410-0.482402.287101.70910HepG2QKI
TFAP4ENSG00000090447.768.78800182.45100-1.407305.966704.95830HepG2RAVER1
TFAP4ENSG00000090447.7184.40870384.23320-1.059104.694404.06520HepG2RBM22
TFAP4ENSG00000090447.7160.90140264.83640-0.718903.999803.20120HepG2RBM25
TFAP4ENSG00000090447.7334.38790183.751400.863705.462904.05780HepG2RBM27
TFAP4ENSG00000090447.7112.67060240.83360-1.095907.332506.29980HepG2RPLP0
TFAP4ENSG00000090447.770.33340124.92030-0.828702.650301.87860HepG2RRP9
TFAP4ENSG00000090447.7238.01600129.339000.879806.263505.35400HepG2SAFB2
TFAP4ENSG00000090447.7253.93930161.829800.649902.905901.56230HepG2SART3
TFAP4ENSG00000090447.7310.26520221.250400.487702.921102.20130HepG2SLBP
TFAP4ENSG00000090447.7126.88240233.20860-0.878103.525802.63840HepG2SNRNP70
TFAP4ENSG00000090447.7247.20990433.94820-0.811803.305002.77280HepG2SRFBP1
TFAP4ENSG00000090447.7108.64250292.80590-1.4304013.5461012.66980HepG2SRSF1
TFAP4ENSG00000090447.7158.30730238.22460-0.589603.260802.67180HepG2SRSF9
TFAP4ENSG00000090447.7207.85740376.71900-0.857903.242202.69750HepG2SSB
TFAP4ENSG00000090447.7439.15610304.423600.528602.878301.57090HepG2SSRP1
TFAP4ENSG00000090447.7194.83800275.38570-0.499202.480601.58730HepG2SUPT6H
TFAP4ENSG00000090447.759.95090163.02350-1.443206.990405.99320HepG2SUPV3L1
TFAP4ENSG00000090447.7151.52290263.22200-0.796704.918604.20480HepG2TAF15
TFAP4ENSG00000090447.7122.06250206.40010-0.757803.397902.60360HepG2TARDBP
TFAP4ENSG00000090447.7212.81630142.386800.579703.027502.44380HepG2TRIM56
TFAP4ENSG00000090447.7309.15280225.434300.455502.094001.34340HepG2TUFM
TFAP4ENSG00000090447.7207.73470362.87060-0.804707.683306.61440HepG2UPF1
TFAP4ENSG00000090447.7137.30580283.94420-1.048209.540308.41910HepG2ZC3H8
TFAP4ENSG00000090447.7197.76040399.08920-1.0130012.7616011.80450HepG2ZNF622
TFAP4ENSG00000090447.7746.49910446.244600.7422010.649309.63080K562AGGF1
TFAP4ENSG00000090447.7635.82500464.339200.453403.291402.57700K562AKAP8L
TFAP4ENSG00000090447.7667.85560463.291100.527503.960503.28300K562AQR
TFAP4ENSG00000090447.7666.26750487.206500.451504.130902.99390K562ATP5C1
TFAP4ENSG00000090447.7145.16290258.86260-0.834504.510603.38640K562BOP1
TFAP4ENSG00000090447.7781.90210570.213400.455404.170402.78940K562CPEB4
TFAP4ENSG00000090447.7298.83060212.312100.493002.407701.43170K562CSTF2
TFAP4ENSG00000090447.7635.72970496.007500.358002.702301.50800K562DDX21
TFAP4ENSG00000090447.7970.37740589.975600.7178012.2026010.94110K562DDX47
TFAP4ENSG00000090447.7772.86730499.652800.629206.223304.82560K562DKC1
TFAP4ENSG00000090447.7213.91050333.00350-0.638503.527002.23410K562FKBP4
TFAP4ENSG00000090447.7253.50050171.095400.567102.897801.43070K562G3BP1
TFAP4ENSG00000090447.763.57340134.73850-1.083704.284003.36160K562G3BP2
TFAP4ENSG00000090447.7181.48960383.27870-1.078509.825608.75640K562HNRNPC
TFAP4ENSG00000090447.7322.74520179.002500.850302.655101.65640K562IGF2BP2
TFAP4ENSG00000090447.7266.22030182.050400.548202.960901.71820K562IGF2BP3
TFAP4ENSG00000090447.7657.22530492.774700.415402.974502.11780K562KIF1C
TFAP4ENSG00000090447.7303.94350188.076500.692404.464103.39020K562MAGOH
TFAP4ENSG00000090447.7761.68260552.032900.464304.118202.97440K562MBNL1
TFAP4ENSG00000090447.7507.84970673.56530-0.407402.952801.78160K562MSI2
TFAP4ENSG00000090447.7212.94280364.11980-0.773905.991504.20330K562NCBP2
TFAP4ENSG00000090447.7242.60200167.332700.535802.360301.46060K562PCBP2
TFAP4ENSG00000090447.7271.20640446.25970-0.718503.151802.26390K562PCBP3
TFAP4ENSG00000090447.7867.99460649.346800.418603.435201.84010K562PNPT1
TFAP4ENSG00000090447.7204.85980342.27000-0.740504.604803.56970K562POLR2G
TFAP4ENSG00000090447.7290.87780175.191600.731404.697603.56740K562RBM22
TFAP4ENSG00000090447.7212.37740139.967600.601402.901902.02470K562SF3B4
TFAP4ENSG00000090447.7250.45300169.200800.565702.747701.70370K562SRSF5
TFAP4ENSG00000090447.769.98710132.25030-0.918102.831101.35130K562TAF15
TFAP4ENSG00000090447.7286.79090174.880800.713504.391203.32260K562TIA1
TFAP4ENSG00000090447.7294.25290171.637600.777604.740403.23900K562TRA2A
TFAP4ENSG00000090447.7478.87400351.262500.447002.502001.60990K562TRIM56
TFAP4ENSG00000090447.7498.49890614.84440-0.302602.113701.47900K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TFAP4 is not available on ENCORE database.





8 RBPs can affect the splicing of TFAP4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSTFAP4ENSG00000090447.7chr16-4310455431061243104554310596431177943119500.084000.004450.02607longerK562AQR
A3SSTFAP4ENSG00000090447.7chr16-4312536431275543125364312702432265843230760.069000.004030.02393longerK562AQR
RITFAP4ENSG00000090447.7chr16-4311779431242343117794311950431232443124230.074000.000210.00177includedK562PUS1
RITFAP4ENSG00000090447.7chr16-4311779431242343117794311950431232443124230.121000.001260.04301includedHepG2TIA1
RITFAP4ENSG00000090447.7chr16-4311779431242343117794311950431232443124230.111000.003120.03877includedHepG2PCBP1
RITFAP4ENSG00000090447.7chr16-4311779431242343117794311950431232443124230.099000.004090.07657includedHepG2SRSF1
RITFAP4ENSG00000090447.7chr16-4311779431242343117794311950431232443124230.075000.001210.01359includedHepG2U2AF1
RITFAP4ENSG00000090447.7chr16-4311779431242343117794311950431232443124230.139000.000240.00273includedHepG2SF3B4
RITFAP4ENSG00000090447.7chr16-4311779431242343117794311950431232443124230.099000.000120.02254includedHepG2SRSF7
RITFAP4ENSG00000090447.7chr16-4311779431242343117794311950431232443124230.105000.000000.00002includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TFAP4 is not avaliable on ENCORE database.