TBCE

General Information

Gene Name       : TBCE
Gene ID             : ENSG00000285053.1
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TBCE)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TBCEENSG00000285053.12.283.152.71ENCSR000AEF
HepG2TBCEENSG00000285053.12.683.443.06ENCSR985KAT
K562TBCEENSG00000285053.15.955.765.86ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TBCE is not avaliable on ENCORE database.



Proteins bound to RNA
  • TBCE RNA is bound by 16 proteins.  







eCLIP assay for TBCE is not avaliable on ENCORE database.





16 proteins are bound to TBCE RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1235612051235612178+3'-UTR,CDS4.9432110.44987K562PABPC4
chr1235543362235543406+5'-UTR,CDS3.517575.15776HepG2BCLAF1
chr1235543347235543414+5'-UTR,CDS3.406936.57172K562DDX3X
chr1235530772235530819+5'-UTR3.953563.62765K562SRSF1
chr1235543353235543420+5'-UTR,CDS4.0472113.88870K562ZNF622
chr1235543426235543464+CDS3.781797.13692K562ZNF622
chr1235577797235577878+CDS3.802975.28199HepG2GRWD1
chr1235577885235577937+CDS,intron-Proximal4.301817.97334HepG2BCLAF1
chr1235577797235577947+CDS,intron-Proximal3.043543.75693HepG2HLTF
chr1235577870235577925+CDS3.572659.11524K562UCHL5
chr1235577876235577923+CDS4.480898.16704K562ZNF622
chr1235611754235611798+CDS,intron-Proximal4.672064.86944K562AQR
chr1235602205235602217+CDS3.395613.66187K562ZNF622
chr1235543426235543465+CDS,intron-Proximal3.146186.72164K562UCHL5
chr1235543429235543463+CDS3.756573.14999HepG2GRWD1
chr1235606171235606226+CDS3.057853.67697K562YBX3
chr1235605131235605153+CDS3.570614.17155HepG2BCLAF1
chr1235582845235582865+CDS3.496854.40383K562UCHL5
chr1235577735235577787+CDS,intron-Proximal3.311794.45024K562U2AF2
chr1235577796235577876+CDS4.6465814.80830K562ZNF622
chr1235564820235564840+CDS,intron-Distal3.067924.35477K562UCHL5
chr1235594158235594258+intron-Distal,intron-Proximal3.858043.91018K562KHDRBS1
chr1235576569235576660+intron-Distal4.149504.33299K562ILF3
chr1235575648235575703+intron-Distal4.442414.83729K562ILF3
chr1235548972235549038+intron-Distal4.568453.59909K562EXOSC5
chr1235575158235575213+intron-Distal4.012823.70058K562CSTF2T
chr1235575555235575619+intron-Distal4.896028.15853K562ILF3
chr1235575748235575850+intron-Distal3.492346.59866K562ILF3
chr1235575558235575615+intron-Distal4.115484.27402K562CSTF2T
chr1235543508235543596+intron-Distal,intron-Proximal4.358914.92524K562TARDBP
chr1235590596235590672+intron-Distal,intron-Proximal3.553613.16095HepG2U2AF2
chr1235549609235549668+intron-Distal4.646845.44508K562EXOSC5
chr1235575152235575224+intron-Distal4.690316.40061K562ILF3
chr1235602237235602287+intron-Proximal5.360597.23718K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TBCE is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TBCE is not available on ENCORE database.

  • 82 RBPs can affect the levels of TBCE.  








The Knockdown/knockout RNA-Seq assay for TBCE is not available on ENCORE database.





82 RBPs can affect the gene expression of TBCE :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TBCEENSG00000116957.8408.98420561.27730-0.456704.285303.56050HepG2ACO1
TBCEENSG00000116957.8665.36520904.38990-0.442802.568702.05520HepG2AKAP1
TBCEENSG00000116957.8460.43150678.58480-0.559503.525602.35700HepG2AKAP8
TBCEENSG00000116957.8456.01910563.87400-0.306302.113701.43070HepG2AKAP8L
TBCEENSG00000116957.8479.52350823.44480-0.780106.129104.64810HepG2CCAR1
TBCEENSG00000116957.8299.98130710.94610-1.2449015.9245014.25740HepG2CIRBP
TBCEENSG00000116957.8448.14860561.10680-0.324302.530701.88910HepG2CKAP4
TBCEENSG00000116957.8365.99100583.97400-0.674103.565802.69130HepG2CNOT7
TBCEENSG00000116957.8517.55710706.55440-0.449104.137803.38190HepG2CELF1
TBCEENSG00000116957.8340.73530465.10360-0.448902.712602.04030HepG2DDX21
TBCEENSG00000116957.8434.65580866.34820-0.9951011.4525010.26070HepG2DDX3X
TBCEENSG00000116957.8343.00500464.58330-0.437702.732201.38620HepG2DDX52
TBCEENSG00000116957.8371.59770744.18500-1.001909.869308.78010HepG2DDX6
TBCEENSG00000116957.8324.04620536.97770-0.728707.980006.94330HepG2DKC1
TBCEENSG00000116957.8298.19680427.57320-0.519904.661403.85060HepG2DNAJC2
TBCEENSG00000116957.8503.29510715.42890-0.507403.411402.75710HepG2EIF2S1
TBCEENSG00000116957.8175.27600450.01830-1.3604012.9661011.16640HepG2EIF3D
TBCEENSG00000116957.8551.09010790.64550-0.520703.397502.69080HepG2EIF4A3
TBCEENSG00000116957.8419.28850769.78060-0.876506.667805.63180HepG2EIF4B
TBCEENSG00000116957.8732.87700964.85720-0.396704.152103.44160HepG2ETF1
TBCEENSG00000116957.8655.65020443.209300.564804.849503.39860HepG2FASTKD2
TBCEENSG00000116957.8264.77610440.51360-0.734402.369701.43620HepG2FTO
TBCEENSG00000116957.8316.94680544.76750-0.781407.458406.20370HepG2FUBP3
TBCEENSG00000116957.8371.03370566.06160-0.609402.560901.48640HepG2FUS
TBCEENSG00000116957.8490.16670797.69050-0.702606.158005.15220HepG2FXR1
TBCEENSG00000116957.8511.34220739.99470-0.533203.653102.89280HepG2G3BP1
TBCEENSG00000116957.8295.94100400.68880-0.437202.159901.37450HepG2GEMIN5
TBCEENSG00000116957.8270.54540435.49330-0.686804.857804.03450HepG2HNRNPA1
TBCEENSG00000116957.8283.29200484.41300-0.773906.204405.19810HepG2HNRNPC
TBCEENSG00000116957.8557.05580749.26540-0.427702.826102.11910HepG2HNRNPK
TBCEENSG00000116957.8568.75680691.97870-0.282902.179201.57130HepG2HNRNPL
TBCEENSG00000116957.8289.32650491.53870-0.764609.939508.63480HepG2ILF2
TBCEENSG00000116957.8654.80660869.17830-0.408602.179001.44950HepG2LARP4
TBCEENSG00000116957.8499.72570797.96880-0.675205.724904.79400HepG2MAGOH
TBCEENSG00000116957.8478.80580802.44100-0.745006.125705.21500HepG2MATR3
TBCEENSG00000116957.8276.48310470.99820-0.768503.626402.42950HepG2METAP2
TBCEENSG00000116957.8340.16070542.43560-0.673205.678804.55750HepG2MSI2
TBCEENSG00000116957.8414.32780821.34800-0.9872010.846009.63320HepG2NCBP2
TBCEENSG00000116957.8489.21810753.28400-0.622706.982305.77890HepG2NOL12
TBCEENSG00000116957.8368.73320476.30630-0.369302.522801.70960HepG2PARN
TBCEENSG00000116957.8549.85230752.27890-0.452204.704003.94780HepG2PCBP1
TBCEENSG00000116957.8411.33020765.49060-0.8961014.7950013.72520HepG2PTBP1
TBCEENSG00000116957.8357.91940719.09090-1.0065013.1843012.01200HepG2PUF60
TBCEENSG00000116957.8526.62100763.36480-0.535606.995906.14180HepG2PUM1
TBCEENSG00000116957.8400.16180571.69020-0.514705.308804.50540HepG2PUS1
TBCEENSG00000116957.8470.74020829.00550-0.8165011.3825010.24330HepG2QKI
TBCEENSG00000116957.8328.25440517.28720-0.656202.671101.97750HepG2RAVER1
TBCEENSG00000116957.8606.58650806.45570-0.410903.478302.91570HepG2RBM22
TBCEENSG00000116957.8403.69540752.39080-0.8982011.6159010.29470HepG2RBM25
TBCEENSG00000116957.8340.63320584.79690-0.779702.567001.61380HepG2RBM27
TBCEENSG00000116957.8157.16820474.87820-1.595205.391503.90490HepG2RCC2
TBCEENSG00000116957.8466.39490851.90200-0.8691014.2147013.16830HepG2NELFE
TBCEENSG00000116957.8584.78290793.45910-0.440304.439503.68200HepG2RECQL
TBCEENSG00000116957.8295.51120437.87070-0.567303.905103.18630HepG2RPS19
TBCEENSG00000116957.8312.68700673.65310-1.107303.453201.89780HepG2SF1
TBCEENSG00000116957.8319.73790796.94110-1.3176027.8664026.32850HepG2SF3B4
TBCEENSG00000116957.8688.83240831.84760-0.272202.122001.69200HepG2SRSF1
TBCEENSG00000116957.8534.82170710.01920-0.408803.749303.04170HepG2SRSF5
TBCEENSG00000116957.8604.06660807.46890-0.418704.598303.83280HepG2SUCLG1
TBCEENSG00000116957.8323.62910463.70010-0.518903.190502.41750HepG2TARDBP
TBCEENSG00000116957.8368.25010471.76690-0.357402.560402.01360HepG2TRIM56
TBCEENSG00000116957.8549.60330743.65840-0.436202.428401.64780HepG2UBE2L3
TBCEENSG00000116957.8452.03480627.22030-0.472504.853403.96920HepG2UPF1
TBCEENSG00000116957.8515.89000644.69920-0.321602.401001.41390HepG2UTP18
TBCEENSG00000116957.8426.65880605.55750-0.505204.731203.98190HepG2UTP3
TBCEENSG00000116957.81413.793302022.51900-0.516605.779504.98560K562AQR
TBCEENSG00000116957.8855.085001262.27820-0.561904.260802.65820K562CIRBP
TBCEENSG00000116957.8642.20950821.75400-0.355702.703801.67250K562DDX3X
TBCEENSG00000116957.82696.492701930.346500.4821010.260009.09540K562DDX47
TBCEENSG00000116957.8698.69030935.07540-0.420402.692401.79220K562EFTUD2
TBCEENSG00000116957.81196.572701648.19300-0.462007.006305.93810K562EIF2S2
TBCEENSG00000116957.8942.60140620.621800.602803.022201.96450K562EIF3A
TBCEENSG00000116957.8542.191101001.37260-0.885107.590705.73880K562EIF3D
TBCEENSG00000116957.81383.864201038.365900.414305.094404.02790K562EIF3G
TBCEENSG00000116957.81276.71940892.806700.515907.363506.44000K562FXR1
TBCEENSG00000116957.8938.140101192.03890-0.345603.018801.89410K562HNRNPA1
TBCEENSG00000116957.8530.495401123.20100-1.0822015.2775013.95680K562HNRNPC
TBCEENSG00000116957.81668.887501176.461600.504303.255001.90410K562HNRNPK
TBCEENSG00000116957.82028.273401223.128000.729608.501606.71930K562HNRNPM
TBCEENSG00000116957.81003.859501320.05900-0.395004.486403.34200K562HNRNPU
TBCEENSG00000116957.82756.371102016.170700.451104.740703.70650K562HSPD1
TBCEENSG00000116957.8873.560801177.10130-0.430302.764101.73810K562IGF2BP2
TBCEENSG00000116957.8953.812701313.84600-0.462003.586402.63900K562PCBP3
TBCEENSG00000116957.8813.782101007.75090-0.308402.462001.70910K562POLR2G
TBCEENSG00000116957.8742.130601007.02130-0.440303.453402.42910K562PSIP1
TBCEENSG00000116957.82039.920802579.81730-0.338803.321302.42870K562PUF60
TBCEENSG00000116957.81665.693001204.258800.467904.022403.38610K562PUS1
TBCEENSG00000116957.8369.62270918.55430-1.3133022.0043019.29340K562RCC2
TBCEENSG00000116957.81397.55110927.005200.592205.507404.35230K562RPS19
TBCEENSG00000116957.81127.967701531.63250-0.441306.108904.93550K562SF3A3
TBCEENSG00000116957.8704.643101037.83200-0.558606.902005.51560K562SF3B4
TBCEENSG00000116957.8871.963901178.78440-0.435002.988802.25710K562SRSF1
TBCEENSG00000116957.8836.085101113.08680-0.412802.475501.48880K562SRSF5
TBCEENSG00000116957.81390.967801010.819500.460505.425204.26760K562SYNCRIP
TBCEENSG00000116957.8756.78410968.61300-0.356002.137301.32580K562TIAL1
TBCEENSG00000116957.81383.715601645.86940-0.250302.930702.19170K562UPF1
TBCEENSG00000116957.81697.823901464.472400.213202.383701.59380K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TBCE is not available on ENCORE database.





16 RBPs can affect the splicing of TBCE :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETBCEENSG00000116957.8chr1+235590454235590554235577747235577933235594019235594119-0.256000.002690.04584excludedK562SF3B4
SETBCEENSG00000116957.8chr1+235564817235564902235543333235543464235577747235577933-0.170000.000000.00002excludedK562SF3B4
SETBCEENSG00000116957.8chr1+235564817235564902235543333235543464235577747235577933-0.095000.002580.07504excludedK562PRPF8
SETBCEENSG00000116957.8chr1+235564817235564902235543333235543464235577747235577784-0.144000.000000.00010excludedHepG2U2AF1
SETBCEENSG00000116957.8chr1+235599059235599155235597518235597595235600636235600789-0.242000.003120.07380excludedK562AKAP8L
SETBCEENSG00000116957.8chr1+235602083235602237235600636235600789235605128235605197-0.067000.000000.00000excludedK562AQR
SETBCEENSG00000116957.8chr1+235594019235594119235590454235590554235597518235597595-0.086000.000160.00257excludedK562AQR
SETBCEENSG00000116957.8chr1+235599059235599155235597518235597595235600636235600784-0.144000.000210.00323excludedK562AQR
SETBCEENSG00000116957.8chr1+235564817235564902235543333235543464235577747235577933-0.151000.000000.00000excludedK562AQR
SETBCEENSG00000116957.8chr1+235596260235596486235594019235594119235597518235597595-0.079000.000100.00608excludedK562FXR1
SETBCEENSG00000116957.8chr1+235599059235599155235597518235597595235600636235600789-0.437000.000000.00000excludedK562PUS1
SETBCEENSG00000116957.8chr1+235564817235564902235543333235543464235577747235577784-0.142000.000020.00087excludedK562U2AF1
SETBCEENSG00000116957.8chr1+235596260235596486235594019235594119235597518235597595-0.103000.000580.01634excludedHepG2SRSF1
SETBCEENSG00000116957.8chr1+235582787235582876235577747235577933235590454235590554-0.270000.000090.00672excludedHepG2SF3B4
SETBCEENSG00000116957.8chr1+235564817235564902235543333235543464235577747235577933-0.173000.000140.00943excludedHepG2SF3B4
SETBCEENSG00000116957.8chr1+235599059235599155235597518235597595235600636235600789-0.354000.000030.00180excludedK562RBM15
SETBCEENSG00000116957.8chr1+235599059235599155235597518235597595235600636235600789-0.241000.003810.07578excludedK562AGGF1
SETBCEENSG00000116957.8chr1+2355962602355964132355940192355941192355975182355975950.067000.000770.09190includedK562ZC3H8
SETBCEENSG00000116957.8chr1+2355962602355964862355940192355941192355975182355975950.133000.000040.05897includedK562QKI
SETBCEENSG00000116957.8chr1+235564817235564902235543333235543464235577747235577933-0.179000.000000.00000excludedK562HNRNPC
A3SSTBCEENSG00000116957.8chr1+2355827312355828762355827872355828762355777472355779330.054000.005370.03078longerK562AQR
A3SSTBCEENSG00000116957.8chr1+2356020562356022372356020832356022372356006952356007890.118000.000000.00000longerK562AQR
A3SSTBCEENSG00000116957.8chr1+2355827312355828762355827872355828762355777472355779330.187000.000180.02720longerK562HNRNPC
A5SSTBCEENSG00000116957.8chr1+2356061662356062762356061662356062262356116632356117550.056000.000090.00243longerK562AQR
MXETBCEENSG00000116957.8chr1+235582731235582830235594019235594119235577747235577933235597518235597595-0.174000.001930.028632includedK562DROSHA
MXETBCEENSG00000116957.8chr1+2355827312355828302355940192355941192355777472355779332355975182355975950.103000.002020.016781includedK562AQR
MXETBCEENSG00000116957.8chr1+2355904542355905542355974242355975952355777472355779332355990592355991550.057000.004460.032581includedK562AQR
MXETBCEENSG00000116957.8chr1+2355904542355905542355940192355941192355777472355779332355975182355975950.120000.000040.000571includedK562AQR
MXETBCEENSG00000116957.8chr1+2355904542355905542355962602355964862355777472355779332355975182355975950.459000.016270.093441includedK562AQR
MXETBCEENSG00000116957.8chr1+235582787235582830235594019235594119235577747235577933235597518235597595-0.331000.010200.080202includedHepG2SFPQ
MXETBCEENSG00000116957.8chr1+2355904542355905542355940192355941192355777472355779332355975182355975950.197000.002270.066491includedHepG2SF3B4
MXETBCEENSG00000116957.8chr1+235564817235564902235577747235577784235543333235543464235582787235582876-0.127000.000030.001692includedK562PRPF8
MXETBCEENSG00000116957.8chr1+235582731235582830235594019235594119235577747235577933235597518235597595-0.184000.010390.098972includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TBCE is not avaliable on ENCORE database.