SLC35B1

General Information

Gene Name : SLC35B1
Gene ID : ENSG00000121073.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SLC35B1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SLC35B1	ENSG00000121073.14	36.64	35.29	35.97	ENCSR000AEF
HepG2	SLC35B1	ENSG00000121073.14	85.83	92.64	89.23	ENCSR985KAT
K562	SLC35B1	ENSG00000121073.14	51.06	47.94	49.50	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SLC35B1 is not avaliable on ENCORE database.

Proteins bound to RNA

SLC35B1 RNA is bound by 11 proteins.

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eCLIP assay for SLC35B1 is not avaliable on ENCORE database.

11 proteins are bound to SLC35B1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	47785191	47785292	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.44091	80.80526	HepG2	DDX3X
chr17	47785126	47785191	-	CDS,intron-Distal,intron-Proximal	4.45888	20.67574	HepG2	DDX3X
chr17	47782766	47782911	-	intron-Distal,intron-Proximal	4.73272	18.34426	HepG2	PTBP1
chr17	47785116	47785297	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.23240	17.85655	K562	DDX3X
chr17	47782783	47782863	-	intron-Distal,intron-Proximal	6.24052	15.53860	K562	PTBP1
chr17	47781465	47781587	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.97031	11.47083	K562	YBX3
chr17	47783585	47783636	-	CDS,intron-Distal	3.74637	9.88356	K562	YBX3
chr17	47780548	47780651	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.84214	7.86995	K562	YBX3
chr17	47784272	47784328	-	CDS,intron-Distal,intron-Proximal	5.07707	6.44303	K562	AQR
chr17	47782691	47782748	-	intron-Distal,intron-Proximal	4.24699	5.63677	K562	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 21 entries

eCLIP assay for SLC35B1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SLC35B1 is not available on ENCORE database.
76 RBPs can affect the levels of SLC35B1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SLC35B1 is not available on ENCORE database.

76 RBPs can affect the gene expression of SLC35B1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SLC35B1	ENSG00000121073.9	997.54520	502.22580	0.98990	12.95380	11.31890	K562	PRPF8
SLC35B1	ENSG00000121073.9	1029.86420	664.64590	0.63170	11.02470	9.80030	HepG2	UPF1
SLC35B1	ENSG00000121073.9	982.61840	511.55350	0.94160	10.31000	8.70880	K562	RPS19
SLC35B1	ENSG00000121073.9	876.10300	530.73350	0.72300	8.23490	6.82010	K562	EIF4A3
SLC35B1	ENSG00000121073.9	836.86530	551.93830	0.60040	7.51690	6.58520	K562	FXR1
SLC35B1	ENSG00000121073.9	1887.66000	1372.36660	0.45980	7.45050	6.54400	HepG2	ETF1
SLC35B1	ENSG00000121073.9	1455.81770	877.17680	0.73080	7.37060	6.32740	HepG2	EIF4A3
SLC35B1	ENSG00000121073.9	1312.32840	831.39630	0.65840	7.42430	6.32160	HepG2	HNRNPK
SLC35B1	ENSG00000121073.9	1542.82960	961.19510	0.68260	7.24960	6.28210	HepG2	DDX3X
SLC35B1	ENSG00000121073.9	1292.95570	856.22700	0.59450	7.12330	6.03340	K562	AKAP8L
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 88 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SLC35B1 is not available on ENCORE database.

21 RBPs can affect the splicing of SLC35B1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SLC35B1	ENSG00000121073.9	chr17	-	47784704	47784806			47784326	47784430	47785437	47785525	0.44600	0.00000	0.00007	included	HepG2	SRSF1
SE	SLC35B1	ENSG00000121073.9	chr17	-	47779191	47779284			47778648	47778872	47780219	47780373	0.06900	0.00000	0.00003	included	K562	HNRNPC
A3SS	SLC35B1	ENSG00000121073.9	chr17	-	47783565	47783696			47783565	47783671	47784326	47784430	-0.43000	0.00000	0.00000	shorter	HepG2	SF3A3
A3SS	SLC35B1	ENSG00000121073.9	chr17	-	47780594	47780830			47780594	47780656	47781461	47781609	0.10400	0.00000	0.00000	longer	K562	AQR
A3SS	SLC35B1	ENSG00000121073.9	chr17	-	47780219	47780433			47780219	47780373	47780549	47780656	0.08000	0.00000	0.00000	longer	K562	AQR
A3SS	SLC35B1	ENSG00000121073.9	chr17	-	47781461	47781690			47781461	47781588	47782485	47782643	0.10000	0.00000	0.00000	longer	K562	AQR
RI	SLC35B1	ENSG00000121073.9	chr17	-	47783227	47783671			47783227	47783258	47783565	47783671	0.26500	0.00000	0.00000	included	K562	AQR
RI	SLC35B1	ENSG00000121073.9	chr17	-	47783227	47783671			47783227	47783258	47783565	47783671	-0.15000	0.00000	0.00019	excluded	K562	FXR1
A3SS	SLC35B1	ENSG00000121073.9	chr17	-	47784326	47784506			47784326	47784430	47785091	47785317	0.12700	0.00001	0.00006	longer	K562	AQR
MXE	SLC35B1	ENSG00000121073.9	chr17	-	47783227	47783671	47784326	47784430	47782485	47782643	47784704	47784806	0.08300	0.00001	0.00011	1included	K562	AQR

Showing 1 to 10 of 37 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SLC35B1

General Information

Functions

Localization

Domains (AlphaFold: SLC35B1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SLC35B1 is not avaliable on ENCORE database.

11 proteins are bound to SLC35B1 RNA:

eCLIP assay for SLC35B1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SLC35B1 is not available on ENCORE database.

76 RBPs can affect the gene expression of SLC35B1 :

The Knockdown/knockout RNA-Seq assay for SLC35B1 is not available on ENCORE database.

21 RBPs can affect the splicing of SLC35B1 :

The Knockdown/knockout RNA-Seq assay for SLC35B1 is not avaliable on ENCORE database.