SIPA1L3

General Information

Gene Name       : SIPA1L3
Gene ID             : ENSG00000105738.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SIPA1L3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SIPA1L3ENSG00000105738.109.1512.9811.07ENCSR000AEF
HepG2SIPA1L3ENSG00000105738.1011.326.608.96ENCSR985KAT
K562SIPA1L3ENSG00000105738.101.001.461.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SIPA1L3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SIPA1L3 RNA is bound by 17 proteins.  







eCLIP assay for SIPA1L3 is not avaliable on ENCORE database.





17 proteins are bound to SIPA1L3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193869706038697167+3'-UTR4.134203.45012HepG2UPF1
chr193860091938601010+3'-UTR,CDS3.891863.38114HepG2GRWD1
chr193857208738572194+3'-UTR5.441266.73606HepG2EIF3H
chr193839796638398035+5'-UTR,intron-Proximal5.3094811.76457HepG2PRPF8
chr193863175438631838+CDS,intron-Proximal4.716566.55633HepG2SF3B4
chr193859184238591908+CDS,intron-Proximal4.752466.26248HepG2PRPF8
chr193843818438438305+intron-Distal3.365174.40834HepG2QKI
chr193853429438534332+intron-Distal4.179623.69589K562DGCR8
chr193842616938426236+intron-Distal4.233663.60235HepG2HNRNPM
chr193860299938603153+intron-Distal5.7967414.31755HepG2AGGF1
chr193849161238491717+intron-Distal3.926353.02891HepG2HNRNPL
chr193842389738424006+intron-Distal4.2011010.41207HepG2PCBP2
chr193843318238433238+intron-Distal4.704024.28089HepG2FAM120A
chr193860291138602975+intron-Distal5.8345112.00098K562AGGF1
chr193840502338405074+intron-Distal3.501764.61874HepG2HNRNPC
chr193860282138602911+intron-Distal5.8087110.62324K562AGGF1
chr193860284138602952+intron-Distal3.915047.66211HepG2AGGF1
chr193842379338423878+intron-Distal3.163324.03740HepG2PCBP2
chr193860273438602791+intron-Distal4.878195.38480HepG2AGGF1
chr193840958538409760+intron-Distal3.027403.66774HepG2CSTF2
chr193843096638431017+intron-Distal4.172843.05187HepG2QKI
chr193860249638602544+intron-Distal4.746225.72900K562AGGF1
chr193841832238418444+intron-Distal4.799156.45754K562TARDBP
chr193844150938441571+intron-Distal3.457363.50045HepG2SFPQ
chr193859083638590863+intron-Proximal5.538037.06738K562NSUN2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SIPA1L3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SIPA1L3 is not available on ENCORE database.

  • 70 RBPs can affect the levels of SIPA1L3.  








The Knockdown/knockout RNA-Seq assay for SIPA1L3 is not available on ENCORE database.





70 RBPs can affect the gene expression of SIPA1L3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SIPA1L3ENSG00000105738.6213.10290347.29540-0.704604.472103.13950HepG2AATF
SIPA1L3ENSG00000105738.6451.88890579.77720-0.359502.964902.33870HepG2ACO1
SIPA1L3ENSG00000105738.6372.51440607.89590-0.706502.467101.96240HepG2AKAP1
SIPA1L3ENSG00000105738.6747.82090582.468500.360403.259002.43410HepG2AKAP8L
SIPA1L3ENSG00000105738.6250.42210502.92850-1.006003.749302.83960HepG2ASCC1
SIPA1L3ENSG00000105738.6532.05600692.47620-0.380202.103201.48970HepG2AUH
SIPA1L3ENSG00000105738.61017.04210806.764200.334101.976401.46290HepG2BOP1
SIPA1L3ENSG00000105738.6392.02420567.39190-0.533404.153603.23260HepG2CALR
SIPA1L3ENSG00000105738.6201.62910355.65620-0.818804.680402.76220HepG2CSTF2T
SIPA1L3ENSG00000105738.6270.97330374.94010-0.468502.604801.72070HepG2DDX24
SIPA1L3ENSG00000105738.6459.42190281.861900.704701.970701.36610HepG2DNAJC21
SIPA1L3ENSG00000105738.6193.76360352.81100-0.864605.437403.89140HepG2AGO1
SIPA1L3ENSG00000105738.6674.56600480.772100.488502.670702.08860HepG2EIF2S1
SIPA1L3ENSG00000105738.6511.74560729.49280-0.511503.220601.33700HepG2EIF3H
SIPA1L3ENSG00000105738.6566.03980374.515300.595804.594503.56160HepG2EIF4G2
SIPA1L3ENSG00000105738.6226.54200365.06890-0.688404.826603.38000HepG2FASTKD2
SIPA1L3ENSG00000105738.6592.62160839.52000-0.502503.421302.71570HepG2GPKOW
SIPA1L3ENSG00000105738.6327.02570214.936200.605402.654901.56700HepG2GRSF1
SIPA1L3ENSG00000105738.6375.97910284.562200.401801.899901.35310HepG2HNRNPA1
SIPA1L3ENSG00000105738.6446.66760316.523600.496802.868802.16410HepG2HNRNPC
SIPA1L3ENSG00000105738.6742.57050504.789000.556706.509105.47280HepG2HNRNPF
SIPA1L3ENSG00000105738.6478.23120360.958200.405803.254102.52830HepG2HNRNPL
SIPA1L3ENSG00000105738.6501.46520314.430900.673307.330906.38120HepG2HNRNPU
SIPA1L3ENSG00000105738.6705.14480497.070700.504404.431803.53380HepG2IGF2BP1
SIPA1L3ENSG00000105738.6514.33750321.180600.679208.394407.18550HepG2ILF2
SIPA1L3ENSG00000105738.6576.14170745.56010-0.371902.444201.68180HepG2MSI2
SIPA1L3ENSG00000105738.6611.41660392.937200.637805.301904.25280HepG2NOL12
SIPA1L3ENSG00000105738.6796.32700520.277300.614002.759501.30610HepG2NOLC1
SIPA1L3ENSG00000105738.6491.59450280.447100.809609.169307.87350HepG2PPIL4
SIPA1L3ENSG00000105738.6836.95650616.025000.442104.852003.85880HepG2PRPF4
SIPA1L3ENSG00000105738.6758.81720375.101201.016406.614205.74590HepG2PUF60
SIPA1L3ENSG00000105738.6604.63340398.196100.602507.831406.93950HepG2PUM1
SIPA1L3ENSG00000105738.6700.29580546.231700.358402.487201.88940HepG2QKI
SIPA1L3ENSG00000105738.6749.197701043.17630-0.477604.521203.45760HepG2RBM15
SIPA1L3ENSG00000105738.6742.75800561.312700.404002.958702.40210HepG2NELFE
SIPA1L3ENSG00000105738.6528.80070309.905700.770805.615504.49950HepG2RPS2
SIPA1L3ENSG00000105738.6460.18390233.290200.980007.121505.84740HepG2RPS3A
SIPA1L3ENSG00000105738.6482.43850280.014200.784709.316308.24330HepG2SAFB2
SIPA1L3ENSG00000105738.6963.80850431.589101.159003.870402.20570HepG2SF1
SIPA1L3ENSG00000105738.61173.38140792.975900.565205.688704.70710HepG2SF3B1
SIPA1L3ENSG00000105738.6554.09390359.683400.623307.321506.26460HepG2SLBP
SIPA1L3ENSG00000105738.6459.10140326.543100.491404.288203.51870HepG2SMN1
SIPA1L3ENSG00000105738.6499.63800336.173600.571603.180002.14630HepG2SMNDC1
SIPA1L3ENSG00000105738.6711.35610385.699500.883002.659901.38410HepG2SNRNP200
SIPA1L3ENSG00000105738.6440.27560548.10030-0.316002.027801.60550HepG2SRSF1
SIPA1L3ENSG00000105738.6564.84830370.369400.608806.605405.69500HepG2SRSF5
SIPA1L3ENSG00000105738.6270.02280445.91400-0.723707.525206.69650HepG2SRSF9
SIPA1L3ENSG00000105738.6298.63980202.997900.556802.597601.53650HepG2STIP1
SIPA1L3ENSG00000105738.6679.05380421.202100.688909.740708.69380HepG2SUCLG1
SIPA1L3ENSG00000105738.6340.45970492.67070-0.533104.285103.61060HepG2TAF15
SIPA1L3ENSG00000105738.61111.54610781.024700.509004.578703.67760HepG2TARDBP
SIPA1L3ENSG00000105738.6578.25680305.525700.9203011.4365010.54230HepG2TIAL1
SIPA1L3ENSG00000105738.6639.28400308.259701.0522018.5846017.29130HepG2TRIM56
SIPA1L3ENSG00000105738.61175.69470448.676101.389705.374703.96170HepG2U2AF2
SIPA1L3ENSG00000105738.6666.92380387.917000.781703.046402.17020HepG2UBE2L3
SIPA1L3ENSG00000105738.6303.27790208.968500.537302.343301.34250HepG2XPO5
SIPA1L3ENSG00000105738.6450.71120607.92750-0.431704.107003.31350HepG2ZC3H8
SIPA1L3ENSG00000105738.6651.624101022.79270-0.6504012.8589011.89800HepG2ZNF622
SIPA1L3ENSG00000105738.6204.63220112.640100.861204.771703.30430K562CCAR1
SIPA1L3ENSG00000105738.6211.80530300.12020-0.502802.172001.31010K562CELF1
SIPA1L3ENSG00000105738.6212.95120126.122300.755603.619502.06820K562DHX30
SIPA1L3ENSG00000105738.6138.8780082.884500.744502.271701.34520K562EIF3D
SIPA1L3ENSG00000105738.6335.25970244.097200.457702.618701.70220K562EIF4G2
SIPA1L3ENSG00000105738.665.85700165.42360-1.328807.447705.99480K562FIP1L1
SIPA1L3ENSG00000105738.613.8941047.28430-1.766903.811002.95180K562G3BP2
SIPA1L3ENSG00000105738.6334.84650243.991100.456602.444201.45820K562HNRNPL
SIPA1L3ENSG00000105738.6126.0199064.271700.971304.013202.99500K562MAGOH
SIPA1L3ENSG00000105738.6230.98580150.850400.614602.930202.02710K562METAP2
SIPA1L3ENSG00000105738.6137.8174076.742600.844602.492001.71820K562RPS19
SIPA1L3ENSG00000105738.6180.0316093.100200.951304.197202.85730K562SRSF4
SIPA1L3ENSG00000105738.6105.0555061.955000.761802.336201.68370K562TARDBP
SIPA1L3ENSG00000105738.6107.9899059.762100.853502.855002.02160K562TIA1
SIPA1L3ENSG00000105738.617.5536045.80990-1.383902.642801.57820K562U2AF1
SIPA1L3ENSG00000105738.615.2454047.31950-1.634103.645202.72120K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SIPA1L3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SIPA1L3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SIPA1L3 is not avaliable on ENCORE database.