SARNP

General Information

Gene Name : SARNP
Gene ID : ENSG00000205323.8
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SARNP)

Not Available

Antibody Validation

View validation images for all SARNP antibodies

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SARNP	ENSG00000205323.8	187.43	151.36	169.40	ENCSR000AEF
HepG2	SARNP	ENSG00000205323.8	53.51	87.59	70.55	ENCSR985KAT
K562	SARNP	ENSG00000205323.8	148.99	133.19	141.09	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	SARNP-BGKcLV33-K562	ENCSR639XFV	SARNP	K562	Released		ENCSR271ZAB	CRISPR	KD% = 64.6,65.7
knockdown followed by RNA-seq	SARNP-BGHcLV31-HepG2	ENCSR207GTU	SARNP	HepG2	Released		ENCSR452TFV	CRISPR	KD% = 51.7,54.2

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SARNP	ENCAB353OXX	A303-209A	1		Released, ENCODE3	Released, ENCODE4	BGHcLV31-27, Released, ENCODE4	BGKcLV33-31, Released, ENCODE4
SARNP	ENCAB677HXD	A303-210A	1		Released, ENCODE3	Released, ENCODE4	BGHcLV31-27, Released, ENCODE4	BGKcLV33-31, Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
SARNP	K562	CRISPR			BGKcLV33-25,BGKcLV33-26	BGKcLV33-1,BGKcLV33-2	0.0,0.0	NotSatisfied	ENCODE4
SARNP	K562	CRISPR	ENCSR639XFV	ENCSR271ZAB	SARNP-BGKcLV33-31,SARNP-BGKcLV33-32	NT-BGKcLV33-1,NT-BGKcLV33-2	64.6,65.7	Released	ENCODE4
SARNP	HepG2	CRISPR	ENCSR207GTU	ENCSR452TFV	SARNP-BGHcLV31-27,SARNP-BGHcLV31-28	NT-BGHcLV31-1,NT-BGHcLV31-2	51.7,54.2	Released	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
SARNP	Product_ID: A303-209A Lot_ID: 1 Source: Bethyl Labs Target Name: SARNP-human
SARNP	Product_ID: A303-210A Lot_ID: 1 Source: Bethyl Labs Target Name: SARNP-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SARNP is not avaliable on ENCORE database.

Proteins bound to RNA

SARNP RNA is bound by 23 proteins.

CanvasJS.com

eCLIP assay for SARNP is not avaliable on ENCORE database.

23 proteins are bound to SARNP RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	56188588	56188639	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.07469	20.85195	K562	ZNF622
chr12	56188622	56188664	-	5'-UTR,CDS,intron-Distal	4.43483	18.02599	K562	UCHL5
chr12	56188590	56188622	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.22954	16.07261	K562	UCHL5
chr12	56194360	56194413	-	5'-UTR,CDS,intron-Distal	3.97018	16.00088	K562	UCHL5
chr12	56194344	56194360	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.56149	15.32865	K562	UCHL5
chr12	56188544	56188593	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.77551	15.12562	HepG2	PRPF8
chr12	56188605	56188666	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.20648	14.53471	K562	ZNF800
chr12	56189807	56189839	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.18822	14.53471	K562	ZNF800
chr12	56189808	56189839	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.76195	13.59578	K562	UCHL5
chr12	56211449	56211496	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.52217	13.50892	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 95 entries

eCLIP assay for SARNP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SARNP is not available on ENCORE database.
77 RBPs can affect the levels of SARNP.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SARNP is not available on ENCORE database.

77 RBPs can affect the gene expression of SARNP :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SARNP	ENSG00000205323.4	363.22300	868.55850	-1.25780	24.61340	23.00940	HepG2	QKI
SARNP	ENSG00000205323.4	1528.36060	871.52530	0.81030	19.77280	18.75150	HepG2	SRSF1
SARNP	ENSG00000205323.4	676.03590	1173.59740	-0.79580	15.89780	14.65170	HepG2	ETF1
SARNP	ENSG00000205323.4	2728.47690	1594.98020	0.77450	12.51190	11.40180	K562	PUS1
SARNP	ENSG00000205323.4	1616.41550	1107.89020	0.54490	10.92820	10.11120	HepG2	SRFBP1
SARNP	ENSG00000205323.4	608.73700	1041.00610	-0.77410	10.52500	9.46290	HepG2	PUF60
SARNP	ENSG00000205323.4	2156.62330	1545.58450	0.48050	9.40890	8.44180	K562	AGGF1
SARNP	ENSG00000205323.4	1565.86500	931.66450	0.74900	9.68720	8.27810	K562	PRPF8
SARNP	ENSG00000205323.4	495.48110	764.82660	-0.62630	8.74870	7.62980	HepG2	SRSF7
SARNP	ENSG00000205323.4	510.38260	778.46800	-0.60910	8.20110	7.04850	HepG2	HNRNPF
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 95 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SARNP is not available on ENCORE database.

11 RBPs can affect the splicing of SARNP :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SARNP	ENSG00000205323.4	chr12	-	56194637	56194684			56194345	56194413	56197412	56197512	-0.07500	0.00000	0.00000	excluded	K562	SF3B4
SE	SARNP	ENSG00000205323.4	chr12	-	56194637	56194684			56194345	56194413	56197412	56197538	-0.14900	0.00000	0.00000	excluded	K562	AQR
SE	SARNP	ENSG00000205323.4	chr12	-	56160763	56160827			56154334	56154424	56182858	56182927	0.05400	0.00000	0.00037	included	HepG2	FTO
SE	SARNP	ENSG00000205323.4	chr12	-	56194637	56194684			56194345	56194413	56197412	56197512	-0.07000	0.00000	0.00004	excluded	HepG2	SF3A3
SE	SARNP	ENSG00000205323.4	chr12	-	56194637	56194684			56194345	56194413	56197412	56197512	-0.06100	0.00000	0.00000	excluded	K562	HNRNPC
MXE	SARNP	ENSG00000205323.4	chr12	-	56151166	56151337	56154334	56154424	56146365	56146624	56182858	56182927	-0.07400	0.00000	0.00000	2included	K562	AQR
MXE	SARNP	ENSG00000205323.4	chr12	-	56151166	56151370	56154334	56154424	56146363	56146624	56182858	56182927	-0.06600	0.00000	0.00001	2included	K562	AQR
MXE	SARNP	ENSG00000205323.4	chr12	-	56151166	56151337	56154334	56154424	56146365	56146624	56182858	56182927	-0.10600	0.00000	0.00012	2included	K562	HNRNPC
SE	SARNP	ENSG00000205323.4	chr12	-	56194637	56194684			56194345	56194413	56197412	56197512	-0.05200	0.00001	0.00036	excluded	K562	U2AF1
MXE	SARNP	ENSG00000205323.4	chr12	-	56194345	56194413	56194637	56194684	56189808	56189860	56197412	56197512	-0.12800	0.00004	0.00050	2included	K562	AQR

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SARNP

General Information

Functions

Localization

Domains (AlphaFold: SARNP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SARNP is not avaliable on ENCORE database.

23 proteins are bound to SARNP RNA:

eCLIP assay for SARNP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SARNP is not available on ENCORE database.

77 RBPs can affect the gene expression of SARNP :

The Knockdown/knockout RNA-Seq assay for SARNP is not available on ENCORE database.

11 RBPs can affect the splicing of SARNP :

The Knockdown/knockout RNA-Seq assay for SARNP is not avaliable on ENCORE database.