RXRB

General Information

Gene Name       : RXRB
Gene ID             : ENSG00000204231.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RXRB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RXRBENSG00000204231.1010.3817.5613.97ENCSR000AEF
HepG2RXRBENSG00000204231.1028.6824.4026.54ENCSR985KAT
K562RXRBENSG00000204231.1021.6119.1120.36ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RXRB is not avaliable on ENCORE database.



Proteins bound to RNA
  • RXRB RNA is bound by 29 proteins.  







eCLIP assay for RXRB is not avaliable on ENCORE database.





29 proteins are bound to RXRB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63316277133162854-3'-UTR,CDS,intron-Distal,intron-Proximal3.815803.00614K562U2AF2
chr63316203933162107-3'-UTR,intron-Distal4.029383.89860HepG2PABPN1
chr63316345233163484-3'-UTR,CDS,intron-Distal,intron-Proximal3.165156.89845HepG2U2AF1
chr63316160833161676-3'-UTR,intron-Distal4.144973.64119HepG2UPF1
chr63316278433162848-3'-UTR,CDS,intron-Distal,intron-Proximal4.071596.40635HepG2U2AF1
chr63316379333163833-3'-UTR,CDS,intron-Distal,intron-Proximal4.009679.85316HepG2U2AF2
chr63316345233163487-3'-UTR,CDS,intron-Distal,intron-Proximal4.9303219.94313HepG2U2AF2
chr63316424033164336-3'-UTR,CDS,intron-Distal3.101086.72164K562UCHL5
chr63316419933164259-3'-UTR,CDS,intron-Distal,intron-Proximal3.071894.38249K562RBM15
chr63316425133164334-3'-UTR,CDS,intron-Distal4.350449.73538K562DDX24
chr63316377433163825-3'-UTR,CDS,intron-Distal,intron-Proximal3.416744.06757K562UCHL5
chr63316170333161884-3'-UTR,intron-Distal3.368078.03766HepG2LSM11
chr63316429033164326-3'-UTR,CDS,intron-Distal4.333623.77023K562ZNF622
chr63316361433163694-3'-UTR,CDS,intron-Distal,intron-Proximal3.276757.52282K562PRPF8
chr63316334833163437-3'-UTR,CDS,intron-Distal3.959638.54758K562ZNF622
chr63316140333161449-3'-UTR,intron-Distal4.460735.22544HepG2ZC3H11A
chr63316426933164325-3'-UTR,CDS,intron-Distal3.713954.64775K562SF3B4
chr63316281133162830-3'-UTR,CDS,intron-Distal,intron-Proximal3.627124.68902HepG2PPIG
chr63316139933161450-3'-UTR,intron-Distal6.1043220.92704K562LIN28B
chr63316379233163838-3'-UTR,CDS,intron-Distal,intron-Proximal3.905175.64238K562PRPF8
chr63316425633164346-3'-UTR,CDS,intron-Distal3.5333023.57948HepG2PPIG
chr63316280533162859-3'-UTR,CDS,intron-Distal,intron-Proximal5.196538.96545K562BUD13
chr63316382533163833-3'-UTR,intron-Distal,intron-Proximal4.475174.08501K562U2AF2
chr63316140133161449-3'-UTR,intron-Distal4.886285.52571HepG2RBFOX2
chr63316428133164323-3'-UTR,CDS,intron-Distal3.330183.06830K562UPF1
chr63316147433161589-3'-UTR,intron-Distal3.920066.89004HepG2PABPN1
chr63316380233163847-3'-UTR,CDS,intron-Distal,intron-Proximal4.437686.59856K562SF3B4
chr63316414533164245-3'-UTR,CDS,intron-Distal,intron-Proximal3.6733910.21568K562BUD13
chr63316426833164337-3'-UTR,CDS,intron-Distal3.182279.11678HepG2BCLAF1
chr63316243533162516-3'-UTR,CDS,intron-Distal,intron-Proximal3.051574.43988HepG2GRWD1
chr63316280033162857-3'-UTR,CDS,intron-Distal,intron-Proximal3.9830517.07740HepG2U2AF2
chr63316314833163233-3'-UTR,CDS,intron-Distal,intron-Proximal3.859958.74774HepG2PPIG
chr63316427133164351-3'-UTR,CDS,intron-Distal3.036636.56297HepG2PRPF4
chr63316330533163367-3'-UTR,CDS,intron-Distal,intron-Proximal3.5151914.57907HepG2PRPF8
chr63316418933164246-3'-UTR,CDS,intron-Distal,intron-Proximal3.834435.76899HepG2EFTUD2
chr63316160233161652-3'-UTR,intron-Distal5.130337.60978K562UPF1
chr63316428533164336-3'-UTR,CDS,intron-Distal3.589217.20533HepG2EFTUD2
chr63316414633164254-3'-UTR,CDS,intron-Distal,intron-Proximal4.163905.74379K562XRCC6
chr63316321933163227-3'-UTR,CDS,intron-Distal,intron-Proximal4.359824.34038HepG2BCLAF1
chr63316426233164382-3'-UTR,CDS,intron-Distal3.9015212.09260HepG2SRSF1
chr63316427433164343-3'-UTR,CDS,intron-Distal3.619904.90716K562RBM15
chr63316378833163825-3'-UTR,CDS,intron-Distal,intron-Proximal4.627754.47532K562U2AF2
chr63316333733163444-3'-UTR,CDS,intron-Distal,intron-Proximal3.328897.54133HepG2GRWD1
chr63316140333161442-3'-UTR,intron-Distal4.567924.46422K562UPF1
chr63316335033163406-3'-UTR,CDS,intron-Distal3.553509.02617HepG2PPIG
chr63316140333161453-3'-UTR,intron-Distal5.128507.69933K562RBFOX2
chr63316167233161860-3'-UTR,intron-Distal5.7126120.09068K562UPF1
chr63316423733164357-3'-UTR,CDS,intron-Distal3.148814.48392HepG2SRSF9
chr63316318233163236-3'-UTR,CDS,intron-Distal,intron-Proximal3.051854.55250HepG2GRWD1
chr63316618733166245-5'-UTR,CDS,intron-Distal,intron-Proximal3.337776.58352HepG2EFTUD2
chr63316617833166257-5'-UTR,CDS,intron-Distal,intron-Proximal3.501738.80090HepG2U2AF2
chr63316618633166277-5'-UTR,CDS,intron-Distal,intron-Proximal4.0128510.58560K562AQR
chr63316556033165604-5'-UTR,CDS,intron-Distal3.399664.06531HepG2GRWD1
chr63316406833164113-CDS,intron-Distal,intron-Proximal3.849765.75173HepG2QKI
chr63316707933167148-CDS,intron-Distal3.900646.67846K562HNRNPK
chr63316701933167080-CDS,intron-Distal4.5090514.32020HepG2DDX59
chr63316808333168127-CDS,intron-Distal3.638486.70085HepG2PPIG
chr63316410333164156-CDS,intron-Distal,intron-Proximal4.138108.19973HepG2EFTUD2
chr63316418533164211-CDS,intron-Distal,intron-Proximal3.167363.92281K562AQR
chr63316692933167019-CDS,intron-Distal,intron-Proximal3.9834114.13601HepG2DDX59
chr63316797533168035-CDS,intron-Distal3.307824.20336HepG2AQR
chr63316694833167065-CDS,intron-Distal3.832817.85117K562HNRNPK
chr63316702233167064-CDS,intron-Distal4.291199.94420HepG2HNRNPK
chr63316799733168030-CDS,intron-Distal3.138208.67757K562AQR
chr63316709933167144-CDS,intron-Distal4.345386.14899HepG2PCBP2
chr63316694133167015-CDS,intron-Distal,intron-Proximal5.9543117.54574HepG2HNRNPK
chr63316708033167158-CDS,intron-Distal4.9669517.16316HepG2DDX59
chr63316706433167195-CDS,intron-Distal,intron-Proximal4.6306118.34066HepG2HNRNPK
chr63316682233166892-intron-Distal,intron-Proximal3.931207.12216K562HNRNPK
chr63316683633166898-intron-Distal,intron-Proximal3.741009.35115HepG2DDX59
chr63316690233166926-intron-Distal,intron-Proximal4.312117.15298K562AQR
chr63316356933163639-intron-Distal,intron-Proximal4.3944022.96754HepG2U2AF2
chr63316348433163497-intron-Distal,intron-Proximal3.531416.87135HepG2U2AF1
chr63316549633165539-intron-Distal,intron-Proximal4.965816.92731HepG2PRPF8
chr63316325133163305-intron-Distal,intron-Proximal5.3402810.17728HepG2SF3B4
chr63316676933166811-intron-Distal4.015356.96499HepG2XPO5
chr63316326033163311-intron-Distal,intron-Proximal3.107413.46851HepG2U2AF1
chr63316797333167997-intron-Distal3.729448.31368K562AQR
chr63316692633166946-intron-Distal,intron-Proximal4.060864.98250K562AQR
chr63316361933163661-intron-Distal,intron-Proximal5.530598.08771HepG2EFTUD2
chr63316348733163513-intron-Distal,intron-Proximal3.8158315.42940HepG2U2AF2
chr63316356033163635-intron-Distal,intron-Proximal3.471277.08861HepG2U2AF1
chr63316357333163638-intron-Distal,intron-Proximal4.764585.17144K562U2AF1
chr63316325633163283-intron-Distal,intron-Proximal5.876407.41664HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RXRB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RXRB is not available on ENCORE database.

  • 72 RBPs can affect the levels of RXRB.  








The Knockdown/knockout RNA-Seq assay for RXRB is not available on ENCORE database.





72 RBPs can affect the gene expression of RXRB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RXRBENSG00000204231.61335.53520950.702000.490303.316102.28800HepG2ABCF1
RXRBENSG00000204231.61926.969601132.235500.7671010.146208.74660HepG2CIRBP
RXRBENSG00000204231.61462.685101149.971700.346905.266004.40210HepG2CKAP4
RXRBENSG00000204231.61084.528601340.27020-0.305503.101802.42910HepG2CELF1
RXRBENSG00000204231.61231.804301063.827400.211402.116101.37990HepG2DDX19B
RXRBENSG00000204231.61152.86440936.818100.299302.095101.49580HepG2DDX21
RXRBENSG00000204231.6896.85490710.484100.336002.335301.43650HepG2DHX30
RXRBENSG00000204231.61416.338701100.506200.363904.592903.75930HepG2DKC1
RXRBENSG00000204231.62568.810201259.051701.0287015.2225013.73970HepG2EIF4A3
RXRBENSG00000204231.61078.300901421.74460-0.398905.268804.17400HepG2EIF4G1
RXRBENSG00000204231.62655.597101886.457100.4933010.410609.36560HepG2ETF1
RXRBENSG00000204231.6844.87350684.113400.304402.075101.38690HepG2FUBP3
RXRBENSG00000204231.61583.325801178.478400.425903.146302.43890HepG2G3BP1
RXRBENSG00000204231.6805.78700600.373400.424402.510201.89730HepG2GPKOW
RXRBENSG00000204231.61072.07420743.700800.527505.204004.35580HepG2HNRNPA1
RXRBENSG00000204231.61083.63790827.217600.389403.005302.28650HepG2HNRNPC
RXRBENSG00000204231.61139.70870893.336800.351303.834303.00230HepG2HNRNPF
RXRBENSG00000204231.61919.818801193.501800.685709.054607.84890HepG2HNRNPK
RXRBENSG00000204231.61045.64400821.749400.347503.786103.08790HepG2HNRNPU
RXRBENSG00000204231.61202.17180879.678700.450504.704503.78300HepG2IGF2BP1
RXRBENSG00000204231.61337.57340913.462800.550103.957902.96070HepG2LARP4
RXRBENSG00000204231.61592.509601270.925700.325302.091701.51840HepG2MAGOH
RXRBENSG00000204231.6897.973401278.01440-0.509203.780803.05340HepG2MATR3
RXRBENSG00000204231.61642.818101308.098800.328602.108401.55240HepG2NCBP2
RXRBENSG00000204231.61544.009001196.195800.368105.194604.40420HepG2PCBP1
RXRBENSG00000204231.61419.408801217.204300.221601.913401.44250HepG2PTBP1
RXRBENSG00000204231.61011.209501364.07510-0.431804.133203.42160HepG2PUF60
RXRBENSG00000204231.61010.645701446.97630-0.517806.626505.60450HepG2PUM2
RXRBENSG00000204231.61557.054201171.645100.410206.812905.92030HepG2PUS1
RXRBENSG00000204231.6535.74720852.66500-0.670403.513602.72170HepG2RAVER1
RXRBENSG00000204231.61279.92890962.387100.411303.467202.71600HepG2RPLP0
RXRBENSG00000204231.6575.95160927.73570-0.687804.405802.45990HepG2RTF1
RXRBENSG00000204231.6599.63250731.81130-0.287402.408801.80130HepG2SAFB2
RXRBENSG00000204231.6652.10490947.63820-0.539203.623502.13450HepG2SART3
RXRBENSG00000204231.6824.34250567.090600.539604.495703.61330HepG2SF3B1
RXRBENSG00000204231.61586.034401267.212400.323702.891602.28970HepG2SF3B4
RXRBENSG00000204231.6703.99240853.42760-0.277702.644402.01230HepG2SMN1
RXRBENSG00000204231.62023.221801780.821300.184001.881401.44430HepG2SRFBP1
RXRBENSG00000204231.61208.33650877.684100.461106.377805.39170HepG2SRSF7
RXRBENSG00000204231.62056.921901546.136100.411705.019804.36860HepG2SSB
RXRBENSG00000204231.61263.302201531.71880-0.278003.445902.76640HepG2SUCLG1
RXRBENSG00000204231.61083.52800798.528300.440204.670904.05580HepG2TIAL1
RXRBENSG00000204231.61190.66180820.936600.536304.485503.69490HepG2U2AF1
RXRBENSG00000204231.6857.90710417.330301.039503.168402.11170HepG2U2AF2
RXRBENSG00000204231.6709.19250892.23630-0.331203.101902.47390HepG2UTP3
RXRBENSG00000204231.6692.67930937.73950-0.437002.258701.30510HepG2XRCC6
RXRBENSG00000204231.6953.80820799.959300.253702.317201.69530HepG2ZC3H8
RXRBENSG00000204231.6609.77990851.94620-0.482502.775501.47630HepG2ZRANB2
RXRBENSG00000204231.61120.23690887.360700.336102.692401.66450K562DDX3X
RXRBENSG00000204231.6692.85100995.51500-0.522907.368906.37460K562DDX47
RXRBENSG00000204231.61107.14010929.136200.252802.102601.46160K562EIF2S2
RXRBENSG00000204231.6303.77350550.61690-0.858104.934903.55050K562EIF3A
RXRBENSG00000204231.6464.70440667.24740-0.521904.818603.78280K562EIF3G
RXRBENSG00000204231.61352.14990927.047700.544405.932404.74070K562EIF4A3
RXRBENSG00000204231.6830.27190625.487300.408502.628401.80250K562FIP1L1
RXRBENSG00000204231.6741.21040964.08630-0.379303.865303.16720K562FXR1
RXRBENSG00000204231.6381.60810731.13250-0.938008.263906.90900K562G3BP2
RXRBENSG00000204231.6636.39990490.580400.375302.366601.63040K562GPKOW
RXRBENSG00000204231.6852.84960570.897700.579005.733504.90510K562HNRNPC
RXRBENSG00000204231.6767.95920509.809100.591005.607303.89950K562HNRNPF
RXRBENSG00000204231.61247.90340991.915100.331102.574401.43730K562IGF2BP3
RXRBENSG00000204231.6811.26080552.831100.553205.068103.10350K562LARP7
RXRBENSG00000204231.6795.96610579.013200.459003.286601.65930K562LIN28B
RXRBENSG00000204231.6767.27300562.098300.448802.704501.30840K562NUSAP1
RXRBENSG00000204231.6734.428001065.25130-0.536503.949502.95530K562PCBP3
RXRBENSG00000204231.6808.68780557.370900.536804.703502.78150K562PHF6
RXRBENSG00000204231.6587.73270817.13200-0.475403.508702.60010K562POLR2G
RXRBENSG00000204231.6827.10260511.868700.692206.934405.38750K562PSIP1
RXRBENSG00000204231.61183.606801658.18990-0.486404.840303.76420K562PUF60
RXRBENSG00000204231.6393.56280823.69110-1.0655012.1183010.38540K562RPS19
RXRBENSG00000204231.61035.16580642.755900.687402.441901.34140K562SF1
RXRBENSG00000204231.6951.95580760.162000.324502.599501.77380K562SF3B4
RXRBENSG00000204231.6590.51340442.712900.415502.554801.58080K562SRFBP1
RXRBENSG00000204231.61152.57130921.889500.322102.268101.33480K562SRSF5
RXRBENSG00000204231.61238.97120987.669100.326902.244601.60330K562TARDBP
RXRBENSG00000204231.61247.46170952.747500.388703.634802.67680K562TIA1
RXRBENSG00000204231.6624.82780828.64430-0.407302.716001.70810K562UCHL5
RXRBENSG00000204231.61273.30110982.295400.374204.183503.31760K562UPF1
RXRBENSG00000204231.6722.33150874.06040-0.275102.491301.68620K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RXRB is not available on ENCORE database.





8 RBPs can affect the splicing of RXRB :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERXRBENSG00000204231.6chr6-331631393316323133162721331628273316334633163404-0.186000.001010.02076excludedHepG2U2AF1
SERXRBENSG00000204231.6chr6-331631393316323133162721331628273316334633163479-0.237000.000010.00182excludedHepG2PRPF8
SERXRBENSG00000204231.6chr6-3316694533167193331660843316624133168018331684650.158000.002070.04831includedHepG2HNRNPK
SERXRBENSG00000204231.6chr6-3316694533167193331660843316624133168018331684650.314000.000260.01761includedHepG2PTBP1
SERXRBENSG00000204231.6chr6-3316694533167193331660843316624133168018331683910.288000.003040.06076includedHepG2SRSF1
SERXRBENSG00000204231.6chr6-331631393316324333162721331628273316334633163479-0.121000.002490.05200excludedHepG2SRSF1
SERXRBENSG00000204231.6chr6-331631393316324333162721331628273316334633163479-0.123000.002040.08158excludedHepG2PCBP1
SERXRBENSG00000204231.6chr6-331631393316323133162721331628273316334633163479-0.151000.002810.08491excludedHepG2HNRNPC
A3SSRXRBENSG00000204231.6chr6-331631393316324333163139331632313316334633163404-0.201000.000930.08285shorterHepG2SRSF1
A3SSRXRBENSG00000204231.6chr6-3316313933163243331631393316323133163346331634040.123000.019000.09126longerK562AQR
A3SSRXRBENSG00000204231.6chr6-331631393316324333163139331632313316334633163404-0.213000.000440.05834shorterHepG2PCBP1
MXERXRBENSG00000204231.6chr6-3316334633163479331636833316381333162721331628273316421033164383-0.147000.000970.034302includedHepG2PCBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RXRB is not avaliable on ENCORE database.