RPS6KB1

General Information

Gene Name       : RPS6KB1
Gene ID             : ENSG00000108443.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RPS6KB1)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPS6KB1ENSG00000108443.1324.2822.1523.21ENCSR000AEF
HepG2RPS6KB1ENSG00000108443.1322.7132.7327.72ENCSR985KAT
K562RPS6KB1ENSG00000108443.1321.4123.8122.61ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPS6KB1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • RPS6KB1 RNA is bound by 23 proteins.  







eCLIP assay for RPS6KB1 is not avaliable on ENCORE database.





23 proteins are bound to RPS6KB1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr175800897158009069+3'-UTR,CDS,intron-Proximal3.484864.57751HepG2U2AF2
chr175801359658013672+3'-UTR,CDS,intron-Proximal3.8318511.14388HepG2PRPF8
chr175799003057990098+3'-UTR,CDS,intron-Proximal3.859095.60471HepG2U2AF2
chr175801179458011892+3'-UTR,CDS,intron-Proximal3.143347.20615HepG2BCLAF1
chr175799200757992063+3'-UTR,CDS,intron-Distal3.171633.17233HepG2BCLAF1
chr175802708758027167+3'-UTR,intron-Distal3.335946.98582K562UPF1
chr175801179558011902+3'-UTR,CDS,intron-Proximal4.281004.76003K562KHSRP
chr175799199457992007+3'-UTR,CDS,intron-Distal,intron-Proximal4.810055.68196HepG2BCLAF1
chr175802770358027765+3'-UTR,intron-Distal5.816315.06516K562PUM2
chr175801385758013940+3'-UTR,CDS,intron-Proximal3.892784.90219HepG2AQR
chr175802613458026185+3'-UTR,intron-Distal3.391864.76929K562FAM120A
chr175801180558011891+3'-UTR,CDS,intron-Proximal3.857464.22917HepG2PPIG
chr175800750058007568+3'-UTR,CDS,intron-Proximal4.252465.64484HepG2PRPF8
chr175799014957990200+3'-UTR,CDS,intron-Proximal5.275824.83371K562EFTUD2
chr175801250658012592+3'-UTR,CDS,intron-Proximal4.0973615.68786HepG2U2AF2
chr175801388758013949+3'-UTR,CDS,intron-Proximal5.637156.35567HepG2PRPF8
chr175800896558009093+3'-UTR,CDS,intron-Proximal3.623453.75245K562BUD13
chr175797062957970727+5'-UTR,CDS,intron-Proximal4.127763.85450K562SRSF1
chr175797119357971221+5'-UTR,intron-Distal4.4412710.97765HepG2XPO5
chr175797114457971193+5'-UTR,CDS,intron-Distal,intron-Proximal3.9086112.43098HepG2XPO5
chr175797068557970781+5'-UTR,CDS,intron-Proximal3.9459813.58524HepG2PRPF8
chr175798793257988001+5'-UTR,CDS,intron-Proximal3.439613.69252K562EFTUD2
chr175799850957998602+intron-Distal4.385024.03915HepG2SUGP2
chr175799412557994174+intron-Distal4.029083.04224HepG2SUGP2
chr175798800157988089+intron-Distal,intron-Proximal3.939613.64144K562EFTUD2
chr175797096657971065+intron-Distal,intron-Proximal3.373193.23164HepG2PRPF4
chr175797130657971318+intron-Distal,intron-Proximal3.132023.85440HepG2HNRNPC
chr175799481157994862+intron-Distal4.146513.21162HepG2HNRNPC
chr175797759557977661+intron-Distal5.2562514.13591K562AGGF1
chr175799021057990295+intron-Distal,intron-Proximal3.997356.93060K562EFTUD2
chr175798773857987815+intron-Distal4.667925.07255HepG2KHSRP
chr175798026157980365+intron-Distal3.499635.31375HepG2ILF3
chr175797080157970951+intron-Distal3.801165.30350K562HNRNPM
chr175801601858016161+intron-Distal3.502263.31157HepG2KHSRP
chr175801241058012492+intron-Distal,intron-Proximal4.024144.31512K562KHSRP
chr175797162957971679+intron-Distal4.227573.77802HepG2U2AF2
chr175798772957987840+intron-Distal,intron-Proximal4.5447415.10637K562KHSRP
chr175798370057983775+intron-Distal3.706236.21080HepG2PCBP2
chr175797759457977639+intron-Distal4.388415.14742HepG2HNRNPL
chr175797995157980006+intron-Distal3.626594.27938HepG2ILF3
chr175799391257994034+intron-Distal3.489463.10961HepG2MATR3
chr175801608058016162+intron-Distal3.467674.90204K562TARDBP
chr175801188558011962+intron-Proximal4.123635.63763K562AQR
chr175800912558009182+intron-Proximal4.151576.44495HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPS6KB1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPS6KB1 is not available on ENCORE database.

  • 78 RBPs can affect the levels of RPS6KB1.  








The Knockdown/knockout RNA-Seq assay for RPS6KB1 is not available on ENCORE database.





78 RBPs can affect the gene expression of RPS6KB1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPS6KB1ENSG00000108443.91405.79270978.996900.521905.475104.01450HepG2AATF
RPS6KB1ENSG00000108443.92036.531401363.485400.5787014.4068013.25090HepG2ACO1
RPS6KB1ENSG00000108443.92429.479201853.450400.390302.703802.17820HepG2AKAP1
RPS6KB1ENSG00000108443.91225.566201533.60450-0.323502.096601.40890HepG2ASCC1
RPS6KB1ENSG00000108443.9858.777301157.74120-0.431002.201301.36880HepG2BCCIP
RPS6KB1ENSG00000108443.91025.091201550.32160-0.596806.569405.54260HepG2CPSF6
RPS6KB1ENSG00000108443.9805.255701080.56110-0.424303.690902.91640HepG2DDX21
RPS6KB1ENSG00000108443.91380.162701057.055200.384703.633302.57730HepG2DDX24
RPS6KB1ENSG00000108443.9783.563801138.47910-0.539005.079103.30200HepG2DDX52
RPS6KB1ENSG00000108443.9922.323201174.24110-0.348403.647902.84630HepG2DNAJC21
RPS6KB1ENSG00000108443.9861.597301163.93930-0.433906.877405.91460HepG2DNAJC2
RPS6KB1ENSG00000108443.91068.951301358.45940-0.345802.261401.42580HepG2EEF2
RPS6KB1ENSG00000108443.91079.945301466.23240-0.441203.427502.77180HepG2EIF2S1
RPS6KB1ENSG00000108443.92228.446001577.579200.498203.329802.57920HepG2EIF4B
RPS6KB1ENSG00000108443.92040.617301736.575400.232702.252901.48380HepG2EIF4G1
RPS6KB1ENSG00000108443.92639.235302242.183000.235102.978702.35850HepG2ETF1
RPS6KB1ENSG00000108443.91326.743601634.72800-0.301201.919201.33890HepG2FXR1
RPS6KB1ENSG00000108443.9754.72390981.94840-0.379702.584101.72310HepG2GEMIN5
RPS6KB1ENSG00000108443.91592.242401301.829400.290403.321402.25640HepG2HDGF
RPS6KB1ENSG00000108443.9902.697401318.66230-0.546805.780004.80580HepG2HNRNPC
RPS6KB1ENSG00000108443.91230.035701603.69550-0.382707.040406.01090HepG2HNRNPL
RPS6KB1ENSG00000108443.9919.445601677.15820-0.8672012.2422011.03950HepG2HNRNPLL
RPS6KB1ENSG00000108443.91198.555101561.20880-0.381404.093303.22700HepG2IGF2BP1
RPS6KB1ENSG00000108443.91147.649601338.05900-0.221502.429001.73720HepG2ILF2
RPS6KB1ENSG00000108443.9985.149001296.77880-0.396502.625701.44740HepG2LIN28B
RPS6KB1ENSG00000108443.91771.691001400.959000.338604.639503.88810HepG2PCBP1
RPS6KB1ENSG00000108443.9945.800201168.36010-0.304902.895102.14380HepG2PPIL4
RPS6KB1ENSG00000108443.91530.120201298.174900.237102.427201.69720HepG2PRPF4
RPS6KB1ENSG00000108443.9846.906101666.29400-0.9764019.3876017.99900HepG2PUF60
RPS6KB1ENSG00000108443.91842.159901543.911900.254702.265001.68970HepG2QKI
RPS6KB1ENSG00000108443.94202.297901372.656001.6141020.6554018.90480HepG2RAVER1
RPS6KB1ENSG00000108443.92571.499501874.055900.456307.793407.02600HepG2RBM22
RPS6KB1ENSG00000108443.92222.593301401.176500.6655010.909509.63180HepG2RBM25
RPS6KB1ENSG00000108443.91825.491101586.468100.202401.879701.41480HepG2NELFE
RPS6KB1ENSG00000108443.91367.01490868.934100.653606.620005.46200HepG2RRP9
RPS6KB1ENSG00000108443.92834.990401939.629400.547504.040803.21890HepG2SF3A3
RPS6KB1ENSG00000108443.92478.294701660.074700.578007.537506.42190HepG2SF3B1
RPS6KB1ENSG00000108443.91849.037901484.180200.317004.075503.38040HepG2SF3B4
RPS6KB1ENSG00000108443.92859.399101847.117300.630304.538403.52830HepG2SNRNP70
RPS6KB1ENSG00000108443.92558.384202116.687400.273304.285603.70180HepG2SRFBP1
RPS6KB1ENSG00000108443.92235.670701549.142000.5291011.6683010.84070HepG2SRSF1
RPS6KB1ENSG00000108443.93379.132101786.190800.9197011.719209.57140HepG2SRSF3
RPS6KB1ENSG00000108443.91283.887201557.64950-0.278903.246302.49920HepG2SRSF7
RPS6KB1ENSG00000108443.91936.703501260.291700.6197015.2269014.11770HepG2SRSF9
RPS6KB1ENSG00000108443.92063.948901392.371800.5678010.368209.39300HepG2TAF15
RPS6KB1ENSG00000108443.91543.539701279.461000.270602.206801.45750HepG2TIA1
RPS6KB1ENSG00000108443.9876.764501272.77020-0.537706.860806.13770HepG2TIAL1
RPS6KB1ENSG00000108443.9983.188201284.23760-0.385405.210904.48680HepG2TRIM56
RPS6KB1ENSG00000108443.92636.239201511.347900.8025012.9741011.57930HepG2U2AF1
RPS6KB1ENSG00000108443.9922.00950669.476700.461603.842002.94870HepG2UCHL5
RPS6KB1ENSG00000108443.91907.738301349.407900.499403.086801.74850HepG2XRCC5
RPS6KB1ENSG00000108443.9780.671701115.50290-0.514903.151702.37910HepG2XRN2
RPS6KB1ENSG00000108443.91777.744501281.086300.472609.950108.80840HepG2ZC3H8
RPS6KB1ENSG00000108443.92365.301801891.839800.322106.356605.61650HepG2ZNF622
RPS6KB1ENSG00000108443.91423.900101690.23720-0.247402.862702.28580K562AGGF1
RPS6KB1ENSG00000108443.91404.686201758.73070-0.324302.828202.16730K562AKAP8L
RPS6KB1ENSG00000108443.91577.107401845.26060-0.226502.253701.43720K562ATP5C1
RPS6KB1ENSG00000108443.9954.593101221.03630-0.355103.861602.25570K562BCCIP
RPS6KB1ENSG00000108443.91130.782201522.11100-0.428803.582002.59030K562BOP1
RPS6KB1ENSG00000108443.91208.544201618.44170-0.421304.627903.61550K562CPSF6
RPS6KB1ENSG00000108443.9724.36750895.22190-0.305502.434801.45220K562CSTF2
RPS6KB1ENSG00000108443.9730.40030991.21620-0.440503.381202.36810K562EFTUD2
RPS6KB1ENSG00000108443.91305.298601621.14130-0.312603.451802.66220K562EIF2S2
RPS6KB1ENSG00000108443.91537.590401061.260200.534804.312402.98410K562EIF3D
RPS6KB1ENSG00000108443.9623.29320849.05970-0.446004.322702.65670K562EWSR1
RPS6KB1ENSG00000108443.91442.275301770.71000-0.296002.233401.47060K562FIP1L1
RPS6KB1ENSG00000108443.91607.418501150.949100.481803.267402.48780K562G3BP2
RPS6KB1ENSG00000108443.91144.235901545.21430-0.433404.257403.27800K562GPKOW
RPS6KB1ENSG00000108443.91316.638002160.49040-0.7145011.523209.95540K562GRSF1
RPS6KB1ENSG00000108443.9637.872501116.32190-0.8074010.659609.55060K562HNRNPC
RPS6KB1ENSG00000108443.91496.016002066.77970-0.466305.674804.10840K562HNRNPL
RPS6KB1ENSG00000108443.9955.976601319.41830-0.464902.834601.88710K562KRR1
RPS6KB1ENSG00000108443.91055.913501508.30130-0.514405.842404.54170K562METAP2
RPS6KB1ENSG00000108443.91485.067101747.00270-0.234403.337802.52490K562NSUN2
RPS6KB1ENSG00000108443.91799.635201367.404800.396202.959902.09920K562PCBP3
RPS6KB1ENSG00000108443.91517.943201048.881200.533207.208205.92820K562POLR2G
RPS6KB1ENSG00000108443.91371.812202010.08590-0.551206.281504.96080K562PPIG
RPS6KB1ENSG00000108443.9702.106601000.85600-0.511504.502103.30520K562PSIP1
RPS6KB1ENSG00000108443.92089.756402745.36330-0.393703.257502.37380K562PUF60
RPS6KB1ENSG00000108443.9678.44610865.46590-0.351202.277001.36790K562SRFBP1
RPS6KB1ENSG00000108443.91667.546701251.185800.414304.595803.68830K562SRSF1
RPS6KB1ENSG00000108443.91408.020601052.006600.420404.653803.58200K562SYNCRIP
RPS6KB1ENSG00000108443.9652.662201266.39500-0.9563012.6674010.95890K562TARDBP
RPS6KB1ENSG00000108443.91011.373701221.55120-0.272402.066201.36630K562TIA1
RPS6KB1ENSG00000108443.9687.41390962.68150-0.485903.560602.49410K562TIAL1
RPS6KB1ENSG00000108443.9740.610901022.49040-0.465304.008102.82600K562TRIM56
RPS6KB1ENSG00000108443.91488.376001116.516100.414603.000701.85230K562U2AF1
RPS6KB1ENSG00000108443.91423.719101152.832700.304402.616401.83480K562U2AF2
RPS6KB1ENSG00000108443.91285.515801585.03230-0.302202.620801.76680K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPS6KB1 is not available on ENCORE database.





17 RBPs can affect the splicing of RPS6KB1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERPS6KB1ENSG00000108443.9chr17+580077185800779358007477580075355800898258009053-0.057000.000000.00000excludedHepG2U2AF2
SERPS6KB1ENSG00000108443.9chr17+580135755801363858012553580126615801382458013902-0.119000.006530.06561excludedHepG2U2AF2
SERPS6KB1ENSG00000108443.9chr17+5797115657971285579704985797068657987922579879720.059000.002810.02901includedK562AQR
SERPS6KB1ENSG00000108443.9chr17+5800771858007793580074775800753558008982580090530.066000.010690.08560includedK562AQR
SERPS6KB1ENSG00000108443.9chr17+580135755801363858012553580126615801382458013902-0.110000.000030.00064excludedK562AQR
SERPS6KB1ENSG00000108443.9chr17+579919955799206457990044579901655800379558003943-0.062000.000890.01105excludedK562AQR
SERPS6KB1ENSG00000108443.9chr17+580089825800908358007477580075355801153058011621-0.233000.000000.00000excludedK562AQR
SERPS6KB1ENSG00000108443.9chr17+580089825800911158007477580075355801153058011621-0.075000.005960.07111excludedK562PUS1
SERPS6KB1ENSG00000108443.9chr17+580081605800841358007477580075355800898258009111-0.052000.000650.01792excludedHepG2SRSF1
SERPS6KB1ENSG00000108443.9chr17+5800771858007793580074775800753558008982580090530.141000.000000.00328includedHepG2EIF3H
SERPS6KB1ENSG00000108443.9chr17+580181965801830458013824580139025802276658022879-0.116000.000470.01933excludedK562UTP18
SERPS6KB1ENSG00000108443.9chr17+580081605800841358007477580075355800898258009111-0.061000.004390.08298excludedK562RBM15
SERPS6KB1ENSG00000108443.9chr17+580181965801830458013824580139025802276658022879-0.089000.004060.07834excludedK562RBM15
SERPS6KB1ENSG00000108443.9chr17+580077185800779358007477580075355800898258009053-0.106000.000000.00003excludedHepG2HNRNPU
SERPS6KB1ENSG00000108443.9chr17+5797115657971285579705995797068657987922579879720.090000.002550.07942includedHepG2HNRNPC
SERPS6KB1ENSG00000108443.9chr17+580081605800841358007477580075355800898258009083-0.075000.000380.01863excludedK562PTBP1
SERPS6KB1ENSG00000108443.9chr17+580181965801830458013824580139025802276658022879-0.153000.000080.02365excludedK562NPM1
SERPS6KB1ENSG00000108443.9chr17+5800816058008413580074775800753558008982580091110.310000.000000.00000includedK562HNRNPC
A3SSRPS6KB1ENSG00000108443.9chr17+5802274558022879580227665802287958018196580183040.244000.000000.00000longerK562AQR
A3SSRPS6KB1ENSG00000108443.9chr17+5800377658003861580037955800386157991932579920640.316000.000000.00000longerK562AQR
A3SSRPS6KB1ENSG00000108443.9chr17+5798789057987972579879225798797257970490579706860.065000.007750.04243longerK562AQR
A3SSRPS6KB1ENSG00000108443.9chr17+5801355658013638580135755801363858012553580126610.065000.000040.00040longerK562AQR
A3SSRPS6KB1ENSG00000108443.9chr17+580135755801390258013824580139025801255358012661-0.172000.000020.00024shorterK562AQR
RIRPS6KB1ENSG00000108443.9chr17+5801357558013902580135755801363858013824580139020.226000.000170.00151includedK562PUS1
RIRPS6KB1ENSG00000108443.9chr17+5801357558013902580135755801363858013824580139020.211000.000000.00003includedHepG2QKI
RIRPS6KB1ENSG00000108443.9chr17+5801357558013902580135755801363858013824580139020.162000.003460.03563includedK562RBM15
RIRPS6KB1ENSG00000108443.9chr17+5801357558013902580135755801363858013824580139020.188000.000030.00080includedHepG2NCBP2
RIRPS6KB1ENSG00000108443.9chr17+5801357558013902580135755801363858013824580139020.097000.003290.02487includedHepG2SF3B4
RIRPS6KB1ENSG00000108443.9chr17+580135755801390258013575580136385801382458013902-0.109000.000250.00404excludedHepG2RBM22
RIRPS6KB1ENSG00000108443.9chr17+5801357558013902580135755801363858013824580139020.163000.006780.06598includedK562UTP18
RIRPS6KB1ENSG00000108443.9chr17+5801357558013902580135755801363858013824580139020.118000.003950.02319includedK562AQR
MXERPS6KB1ENSG00000108443.9chr17+5800771858007817580081605800841358007477580075355800898258009083-0.498000.001600.030722includedHepG2U2AF1
MXERPS6KB1ENSG00000108443.9chr17+57991995579920645800379558003943579900445799016558007477580075350.073000.007140.062531includedHepG2SFPQ
MXERPS6KB1ENSG00000108443.9chr17+5800898258009083580115305801162158007477580075355801179458011885-0.076000.013050.067142includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPS6KB1 is not avaliable on ENCORE database.