RFXANK

General Information

Gene Name       : RFXANK
Gene ID             : ENSG00000064490.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RFXANK)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RFXANKENSG00000064490.1325.3960.8643.12ENCSR000AEF
HepG2RFXANKENSG00000064490.1352.1234.0443.08ENCSR985KAT
K562RFXANKENSG00000064490.13135.32121.93128.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RFXANK is not avaliable on ENCORE database.



Proteins bound to RNA
  • RFXANK RNA is bound by 8 proteins.  







eCLIP assay for RFXANK is not avaliable on ENCORE database.





8 proteins are bound to RFXANK RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191931259319312661+3'-UTR7.5693425.78068K562PABPC4
chr191931256819312593+3'-UTR5.604175.71015K562PABPC4
chr191930370019303911+5'-UTR,intron-Proximal3.019373.00074HepG2EIF3D
chr191930805819308102+CDS,intron-Distal,intron-Proximal5.260145.69951K562AQR
chr191930945719309502+CDS,intron-Proximal3.962483.44423K562BUD13
chr191930952519309605+CDS,intron-Proximal5.421107.28294K562AQR
chr191930835419308427+CDS3.381205.90680HepG2PPIG
chr191930477719304861+CDS3.966165.52342HepG2PPIG
chr191930799419308041+CDS,intron-Distal,intron-Proximal4.111724.07825K562YBX3
chr191930946519309522+CDS,intron-Proximal4.969377.35950HepG2PPIG
chr191930903019309085+CDS,intron-Proximal4.243034.75655HepG2PRPF8
chr191930889219308949+CDS,intron-Proximal5.604598.34710K562AQR
chr191930830319308337+CDS,intron-Proximal5.126136.04760K562AQR
chr191930777219307856+CDS,intron-Proximal3.493808.04783K562YBX3
chr191930842919308478+CDS,intron-Proximal5.234825.69951K562AQR
chr191930847019308535+intron-Distal,intron-Proximal5.050814.24111K562EFTUD2
chr191930846819308548+intron-Distal,intron-Proximal4.366173.31283K562PRPF8
chr191930848419308536+intron-Distal,intron-Proximal5.021564.65563K562AQR
chr191930905619309087+intron-Proximal3.729085.83621K562AQR
chr191930904119309056+intron-Proximal3.481345.34337K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RFXANK is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RFXANK is not available on ENCORE database.

  • 93 RBPs can affect the levels of RFXANK.  








The Knockdown/knockout RNA-Seq assay for RFXANK is not available on ENCORE database.





93 RBPs can affect the gene expression of RFXANK :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RFXANKENSG00000064490.9944.14570493.190400.936808.909308.01470HepG2AKAP1
RFXANKENSG00000064490.9419.39770315.023200.412802.815002.04210HepG2AKAP8L
RFXANKENSG00000064490.9614.27880408.050100.590004.128103.17790HepG2ASCC1
RFXANKENSG00000064490.9469.10140328.412400.514302.264801.42090HepG2BCCIP
RFXANKENSG00000064490.9453.62660271.432500.740805.759904.93530HepG2BOP1
RFXANKENSG00000064490.9352.39290204.160000.787403.742302.84570HepG2CNOT7
RFXANKENSG00000064490.9159.29610249.18760-0.645502.948602.24230HepG2CPSF6
RFXANKENSG00000064490.9610.01300356.009100.776809.979708.90440HepG2CELF1
RFXANKENSG00000064490.9366.06470289.985500.336002.109001.37350HepG2DDX19B
RFXANKENSG00000064490.9334.89600240.076700.480102.442601.80140HepG2DDX21
RFXANKENSG00000064490.9802.21670472.388400.763906.906905.96100HepG2DDX3X
RFXANKENSG00000064490.9337.74760232.700600.537404.117303.35290HepG2DNAJC2
RFXANKENSG00000064490.9421.83820293.646100.522502.339701.48970HepG2EEF2
RFXANKENSG00000064490.9373.00050238.339900.646103.384402.39040HepG2EIF3D
RFXANKENSG00000064490.9580.85570419.789100.468402.133101.52650HepG2EIF4B
RFXANKENSG00000064490.9754.06600611.610000.302002.175801.63080HepG2ETF1
RFXANKENSG00000064490.9419.05800306.395300.451702.709401.88310HepG2EWSR1
RFXANKENSG00000064490.9539.87330403.506000.419902.183901.59010HepG2G3BP1
RFXANKENSG00000064490.9315.88250212.200400.573902.928302.00470HepG2GEMIN5
RFXANKENSG00000064490.9307.30620188.997400.701203.256102.04170HepG2GRSF1
RFXANKENSG00000064490.9425.55320236.997800.844406.803905.85730HepG2HNRNPA1
RFXANKENSG00000064490.9478.29200263.624500.859307.258306.17720HepG2HNRNPC
RFXANKENSG00000064490.9247.79350408.79940-0.722304.851103.94620HepG2HNRNPK
RFXANKENSG00000064490.9490.70690348.692500.492804.537603.69160HepG2HNRNPL
RFXANKENSG00000064490.9377.39510261.881000.527104.002703.28500HepG2HNRNPU
RFXANKENSG00000064490.9388.35120267.501300.537704.478603.56410HepG2ILF2
RFXANKENSG00000064490.9285.48990194.560400.553102.428201.32850HepG2KHDRBS1
RFXANKENSG00000064490.9381.65640261.509000.545302.684101.56700HepG2LARP7
RFXANKENSG00000064490.9481.53040249.419200.949005.013203.62480HepG2METAP2
RFXANKENSG00000064490.9590.10800447.922800.397602.051301.50180HepG2NCBP2
RFXANKENSG00000064490.9483.41020379.576000.348802.151901.47770HepG2NOL12
RFXANKENSG00000064490.9134.09860239.02490-0.833904.003003.10800HepG2NSUN2
RFXANKENSG00000064490.9366.30420259.206900.498803.385902.45830HepG2PARN
RFXANKENSG00000064490.9261.31030400.27020-0.615205.165904.37780HepG2PCBP1
RFXANKENSG00000064490.9513.69800384.641500.417303.579902.92310HepG2PUM1
RFXANKENSG00000064490.9440.33630319.363300.463303.685702.99620HepG2PUS1
RFXANKENSG00000064490.9677.23590511.184000.405703.250802.70170HepG2RBM22
RFXANKENSG00000064490.9308.72520400.33230-0.374901.958701.38340HepG2RBM25
RFXANKENSG00000064490.9307.00180505.71930-0.720105.530304.61210HepG2RPLP0
RFXANKENSG00000064490.9413.02640231.950600.832306.803305.88760HepG2RPS19
RFXANKENSG00000064490.9455.61510290.813300.647603.844202.90560HepG2RPS2
RFXANKENSG00000064490.9329.67530205.031300.685103.387502.50280HepG2RPS3A
RFXANKENSG00000064490.9160.42810246.33870-0.618702.611201.84530HepG2RRP9
RFXANKENSG00000064490.9304.79480233.211700.386102.086001.51360HepG2SAFB2
RFXANKENSG00000064490.9180.14610266.81230-0.566702.507201.83340HepG2SF3B1
RFXANKENSG00000064490.9516.12900271.956000.9243013.3894012.13770HepG2SMN1
RFXANKENSG00000064490.9452.90730262.024300.789404.294703.08360HepG2SMNDC1
RFXANKENSG00000064490.9176.52920296.87670-0.750003.142302.30840HepG2SNRNP70
RFXANKENSG00000064490.9442.27390577.34790-0.384503.175302.65080HepG2SRFBP1
RFXANKENSG00000064490.9583.45710442.607800.398502.930602.44760HepG2SRSF1
RFXANKENSG00000064490.9489.17490357.759900.451303.544402.85180HepG2SRSF5
RFXANKENSG00000064490.9210.09330360.08030-0.777307.243106.42540HepG2SRSF9
RFXANKENSG00000064490.9289.29510178.362800.697603.657002.37440HepG2STIP1
RFXANKENSG00000064490.9710.11200406.869900.8034012.7068011.53850HepG2SUCLG1
RFXANKENSG00000064490.9259.83510397.81790-0.614503.926803.27760HepG2TAF15
RFXANKENSG00000064490.9411.85990254.435100.694805.733105.06350HepG2TIAL1
RFXANKENSG00000064490.9470.29630353.993500.409702.419601.60630HepG2TUFM
RFXANKENSG00000064490.9192.12630339.50320-0.821407.424706.37290HepG2UPF1
RFXANKENSG00000064490.9276.76890183.648400.591602.580101.52890HepG2XPO5
RFXANKENSG00000064490.9457.13490316.415800.530702.578001.87680HepG2XRN2
RFXANKENSG00000064490.9841.082201042.93670-0.310303.106402.51100K562AGGF1
RFXANKENSG00000064490.9810.001401085.20360-0.422003.719402.95890K562AKAP8L
RFXANKENSG00000064490.9736.484601226.21100-0.735503.763603.10000K562AQR
RFXANKENSG00000064490.91394.248301123.158300.311803.634202.90020K562DDX47
RFXANKENSG00000064490.9621.79300347.333500.840009.950408.43670K562EIF3G
RFXANKENSG00000064490.91188.19890816.221600.541605.494304.27660K562FIP1L1
RFXANKENSG00000064490.9548.13000738.60840-0.430302.702301.59210K562FKBP4
RFXANKENSG00000064490.9926.86210569.199300.7033010.306209.22340K562FXR1
RFXANKENSG00000064490.940.39090204.66930-2.3412017.5531015.37170K562G3BP2
RFXANKENSG00000064490.92045.441401676.698600.286702.389501.68510K562GRSF1
RFXANKENSG00000064490.9856.830501101.69000-0.362602.653101.60260K562HNRNPA1
RFXANKENSG00000064490.9521.00900843.39380-0.694902.890601.64030K562HNRNPA2B1
RFXANKENSG00000064490.91301.064001014.961400.358203.131001.99990K562HNRNPL
RFXANKENSG00000064490.9937.89940671.373200.482203.143902.14670K562HNRNPM
RFXANKENSG00000064490.91875.411101106.596000.7610011.053709.49340K562HSPD1
RFXANKENSG00000064490.9630.42640419.144700.588802.298201.38830K562IGF2BP2
RFXANKENSG00000064490.9804.830801151.73980-0.517105.258504.04660K562KIF1C
RFXANKENSG00000064490.91055.426601290.23010-0.289802.361101.53100K562MBNL1
RFXANKENSG00000064490.91351.942501692.41800-0.324102.391201.34470K562MSI2
RFXANKENSG00000064490.9599.64620904.35190-0.592803.957502.84780K562NAA15
RFXANKENSG00000064490.9908.78720605.513300.585702.651301.39810K562NONO
RFXANKENSG00000064490.9252.79590391.50160-0.631002.445201.52910K562PCBP2
RFXANKENSG00000064490.9889.336301229.02720-0.466703.601202.65190K562PCBP3
RFXANKENSG00000064490.9709.33010942.69110-0.410303.678402.74770K562POLR2G
RFXANKENSG00000064490.91467.41820926.600800.663208.179406.59520K562PPIG
RFXANKENSG00000064490.9720.86090427.611200.753307.949006.86440K562PTBP1
RFXANKENSG00000064490.91379.579301732.38440-0.328502.282901.54200K562PUF60
RFXANKENSG00000064490.91417.186401842.50560-0.378604.025202.71670K562PUM1
RFXANKENSG00000064490.9783.589501048.63850-0.420304.482103.74610K562RBM15
RFXANKENSG00000064490.9540.70840409.804700.399802.093501.36700K562RBM22
RFXANKENSG00000064490.9668.32790431.306200.631702.691001.61460K562NELFE
RFXANKENSG00000064490.91220.37480840.006500.538805.975904.38270K562SAFB
RFXANKENSG00000064490.9300.60070496.01250-0.722503.603102.48520K562SF3B1
RFXANKENSG00000064490.9391.19370775.04610-0.986404.868703.09430K562SNRNP200
RFXANKENSG00000064490.9935.67640659.679400.504104.417403.03630K562SRFBP1
RFXANKENSG00000064490.9922.892901131.37800-0.293803.330102.31410K562SRPK2
RFXANKENSG00000064490.9608.61080419.247400.537603.269102.50470K562SRSF1
RFXANKENSG00000064490.91450.05600945.564000.616806.409505.15210K562SYNCRIP
RFXANKENSG00000064490.9578.18440409.221400.498503.180202.29470K562TIA1
RFXANKENSG00000064490.9596.56260401.802000.570104.024602.66620K562TRA2A
RFXANKENSG00000064490.996.09210205.00090-1.093107.179605.89230K562U2AF2
RFXANKENSG00000064490.9828.947801015.42610-0.292702.115601.35150K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RFXANK is not available on ENCORE database.





6 RBPs can affect the splicing of RFXANK :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERFXANKENSG00000064490.9chr19+193079941930806019307774193078551930832919308430-0.272000.000010.00048excludedK562SRSF1
SERFXANKENSG00000064490.9chr19+193079941930806019307774193078551930832919308430-0.210000.000030.00253excludedK562FXR1
SERFXANKENSG00000064490.9chr19+193079941930806019307771193078551930832919308430-0.212000.000310.00967excludedHepG2SRSF1
SERFXANKENSG00000064490.9chr19+1930799419308060193077741930785519308329193084300.188000.000240.08129includedHepG2BCCIP
SERFXANKENSG00000064490.9chr19+1931162719311702193099621931004319312457193126750.171000.000050.00136includedK562HNRNPC
SERFXANKENSG00000064490.9chr19+193079941930806019307774193078551930832919308430-0.257000.000370.00836excludedK562HNRNPC
A3SSRFXANKENSG00000064490.9chr19+193077711930785519307774193078551930474719304942-0.114000.000660.08561shorterK562UTP18
MXERFXANKENSG00000064490.9chr19+1930799419308060193083291930843019307774193078551930891519309041-0.168000.000050.005232includedK562FXR1
MXERFXANKENSG00000064490.9chr19+1930799419308060193083291930843019307774193078551930891519309041-0.159000.004510.064832includedK562HNRNPC
MXERFXANKENSG00000064490.9chr19+1930799419308060193089151930904119307774193078551930946519309710-0.191000.004360.067592includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RFXANK is not avaliable on ENCORE database.