RALGAPB

General Information

Gene Name       : RALGAPB
Gene ID             : ENSG00000170471.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RALGAPB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RALGAPBENSG00000170471.1419.3915.7817.59ENCSR000AEF
HepG2RALGAPBENSG00000170471.1414.9523.8519.40ENCSR985KAT
K562RALGAPBENSG00000170471.1415.2117.2516.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RALGAPB is not avaliable on ENCORE database.



Proteins bound to RNA
  • RALGAPB RNA is bound by 23 proteins.  







eCLIP assay for RALGAPB is not avaliable on ENCORE database.





23 proteins are bound to RALGAPB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr203720726937207351+3'-UTR5.590537.24744K562PUM2
chr203720633037206467+3'-UTR3.096836.48483K562HNRNPL
chr203720357437203609+3'-UTR,CDS,intron-Proximal4.567344.34038HepG2BCLAF1
chr203715341937153504+3'-UTR,CDS,intron-Proximal3.017765.93573HepG2BCLAF1
chr203720637837206470+3'-UTR3.598468.73821HepG2HNRNPL
chr203720450037204549+3'-UTR,intron-Proximal3.762774.77518HepG2U2AF2
chr203712595437126040+5'-UTR,CDS,intron-Proximal4.1391312.12568HepG2SF3A3
chr203711717637117251+5'-UTR,CDS3.945387.65975HepG2BCLAF1
chr203712586737126004+5'-UTR,CDS,intron-Distal,intron-Proximal3.088025.91066HepG2SUGP2
chr203712158537121640+5'-UTR,CDS3.698869.83905HepG2BCLAF1
chr203710147637101603+5'-UTR,intron-Proximal4.911403.28019K562DDX3X
chr203710151737101687+5'-UTR,intron-Distal,intron-Proximal3.219196.02862HepG2GRWD1
chr203710149437101612+5'-UTR,intron-Proximal3.7215211.59264HepG2NCBP2
chr203712157837121687+5'-UTR,CDS4.693767.87748K562PUM2
chr203712164037121736+5'-UTR,CDS4.4775515.55920HepG2BCLAF1
chr203710150037101626+5'-UTR,intron-Proximal3.002964.98439HepG2DDX3X
chr203712592937126018+5'-UTR,CDS,intron-Proximal4.804105.32775HepG2SF3B4
chr203712814137128237+5'-UTR,CDS4.099604.20767HepG2EIF3D
chr203712810137128264+5'-UTR,CDS3.2076613.48662HepG2BCLAF1
chr203712599637126045+5'-UTR,CDS3.752666.81385HepG2BCLAF1
chr203714496037145012+CDS3.094626.09950HepG2BCLAF1
chr203718252437182571+CDS4.2061110.89658HepG2BCLAF1
chr203714643037146456+CDS3.026883.71797HepG2BCLAF1
chr203714650237146561+CDS3.076743.15019HepG2IGF2BP1
chr203719859537198664+CDS,intron-Proximal5.119067.36776HepG2PRPF8
chr203714495637145011+CDS3.478933.86355HepG2PPIG
chr203715983037159876+CDS,intron-Proximal3.9050612.38345HepG2BCLAF1
chr203715355437153608+CDS,intron-Proximal4.317493.38484HepG2CDC40
chr203719940837199467+CDS,intron-Proximal3.145825.40232HepG2U2AF2
chr203716969437169776+CDS3.277703.79741HepG2GRWD1
chr203716142937161461+CDS5.033786.37937HepG2BCLAF1
chr203716980137169820+CDS4.673844.37348HepG2BCLAF1
chr203717734837177432+CDS3.054083.17744HepG2GRWD1
chr203716842637168484+CDS3.435463.34848HepG2PPIG
chr203716979237169841+CDS,intron-Proximal3.163953.05460HepG2PPIG
chr203716855637168599+CDS3.730926.67313HepG2BCLAF1
chr203715022437150324+CDS,intron-Distal4.2582811.11870HepG2BCLAF1
chr203715459637154684+CDS3.2349710.13621HepG2BCLAF1
chr203717733037177397+CDS,intron-Proximal3.871864.79983HepG2U2AF2
chr203716147137161542+CDS,intron-Proximal3.544944.22621HepG2PRPF8
chr203716969037169777+CDS3.898694.52024HepG2PPIG
chr203719404537194120+CDS3.704655.54154HepG2LIN28B
chr203719122837191280+CDS3.515526.60490HepG2BCLAF1
chr203714619937146289+CDS3.1777711.53006HepG2BCLAF1
chr203712825237128320+CDS,intron-Proximal4.625616.81564HepG2PRPF8
chr203719117437191197+CDS,intron-Proximal3.916555.35703HepG2BCLAF1
chr203713776537137852+CDS,intron-Proximal3.8918910.35753HepG2BCLAF1
chr203715358637153732+CDS,intron-Distal,intron-Proximal3.692764.58287K562PRPF8
chr203717979737179867+CDS,intron-Proximal4.9063812.89578HepG2BCLAF1
chr203719401637194122+CDS,intron-Proximal3.897575.16005K562LIN28B
chr203716968637169781+CDS3.7297613.45280HepG2BCLAF1
chr203719849437198574+CDS,intron-Proximal3.3885311.56524HepG2U2AF2
chr203715356137153586+CDS3.080343.55800HepG2BCLAF1
chr203720271137202794+CDS,intron-Proximal5.610008.74981HepG2SF3B4
chr203720290837202963+CDS,intron-Proximal5.280036.01989HepG2PRPF8
chr203718250937182524+CDS,intron-Proximal4.149386.22576HepG2BCLAF1
chr203716137137161419+CDS,intron-Proximal5.0586814.17165HepG2BCLAF1
chr203715410637154159+CDS3.533787.83567HepG2BCLAF1
chr203714644337146561+CDS3.911623.39506K562IGF2BP2
chr203716842837168496+CDS4.346596.65960HepG2BCLAF1
chr203717266937172713+intron-Distal3.444224.33009HepG2SUGP2
chr203712262237122709+intron-Distal3.324385.19856HepG2PTBP1
chr203715502137155109+intron-Distal4.314494.94624HepG2MATR3
chr203720000237200064+intron-Distal3.717196.77200HepG2U2AF2
chr203716054037160631+intron-Distal3.097313.05931HepG2QKI
chr203716022637160289+intron-Distal4.151576.44495HepG2U2AF2
chr203715491337155080+intron-Distal4.022199.96429K562PTBP1
chr203717411937174235+intron-Distal4.643826.05753HepG2SUGP2
chr203719355237193656+intron-Distal5.2240213.60120HepG2PTBP1
chr203717201137172067+intron-Distal3.450314.57452HepG2SUGP2
chr203719829437198384+intron-Distal3.101323.66814K562U2AF2
chr203717247837172523+intron-Distal3.608505.06177HepG2SUGP2
chr203719829537198389+intron-Distal4.4962526.92376HepG2U2AF2
chr203714172537141747+intron-Distal3.687913.00349HepG2ILF3
chr203715105837151162+intron-Distal3.828467.62792HepG2PTBP1
chr203715154737151629+intron-Distal4.669353.42734K562PTBP1
chr203712469337124773+intron-Distal3.056874.86332HepG2SUGP2
chr203712519937125255+intron-Distal3.381214.36650HepG2SUGP2
chr203720010937200165+intron-Distal4.023173.20552HepG2KHSRP
chr203717370937173776+intron-Distal3.582984.33009HepG2SUGP2
chr203714675437146812+intron-Distal3.651574.50744HepG2U2AF2
chr203719356237193633+intron-Distal4.667307.56720K562PTBP1
chr203716282737162874+intron-Distal3.270074.35650K562KHSRP
chr203715503837155092+intron-Distal4.529849.21479HepG2PTBP1
chr203715495237155091+intron-Distal4.431945.32928K562MATR3
chr203714174737141796+intron-Distal4.335104.58424HepG2ILF3
chr203717289437172960+intron-Distal4.574275.31529HepG2SUGP2
chr203712493537125064+intron-Distal4.4309811.10994HepG2SUGP2
chr203715360837153705+intron-Distal,intron-Proximal4.695284.50179HepG2CDC40
chr203716287437162936+intron-Distal4.512065.44709K562KHSRP
chr203712515637125258+intron-Distal3.319193.39827HepG2MATR3
chr203715366237153712+intron-Distal,intron-Proximal4.174113.77802HepG2U2AF2
chr203717225437172313+intron-Distal4.568415.84463HepG2SUGP2
chr203715361737153729+intron-Distal,intron-Proximal3.531566.37278HepG2XPO5
chr203712262637122729+intron-Distal3.928285.39628K562PTBP1
chr203715492137155038+intron-Distal5.4063617.71142HepG2PTBP1
chr203714669737146735+intron-Proximal4.056886.02363HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RALGAPB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RALGAPB is not available on ENCORE database.

  • 78 RBPs can affect the levels of RALGAPB.  








The Knockdown/knockout RNA-Seq assay for RALGAPB is not available on ENCORE database.





78 RBPs can affect the gene expression of RALGAPB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RALGAPBENSG00000170471.102437.240101940.707100.328602.902401.80950HepG2AATF
RALGAPBENSG00000170471.103774.818603111.523500.278702.146601.31420HepG2ABCF1
RALGAPBENSG00000170471.102821.836202524.230900.160701.841001.32680HepG2ACO1
RALGAPBENSG00000170471.102883.558102536.054600.185202.058901.38440HepG2AKAP8L
RALGAPBENSG00000170471.104673.569203522.455000.407804.691203.93730HepG2BOP1
RALGAPBENSG00000170471.103173.355002709.271200.228002.027401.36020HepG2CALR
RALGAPBENSG00000170471.102952.519202523.639200.226303.593602.85280HepG2CKAP4
RALGAPBENSG00000170471.103637.401102575.496100.498002.923802.13650HepG2CNOT7
RALGAPBENSG00000170471.102427.580103233.90440-0.413802.801602.11090HepG2CPSF6
RALGAPBENSG00000170471.101838.529601439.154400.353203.163502.01810HepG2CSTF2
RALGAPBENSG00000170471.101967.166802334.53210-0.247003.639902.70140HepG2DDX19B
RALGAPBENSG00000170471.102973.281502141.908400.473105.731104.79250HepG2DDX21
RALGAPBENSG00000170471.102492.283202095.425300.250102.135001.34310HepG2DDX24
RALGAPBENSG00000170471.103493.361902808.628900.314702.300701.72510HepG2DDX3X
RALGAPBENSG00000170471.101499.933002295.44150-0.6139013.1281011.68810HepG2DNAJC21
RALGAPBENSG00000170471.102818.305402361.033300.255302.630601.49520HepG2EIF2S2
RALGAPBENSG00000170471.102110.880701716.070100.298602.152001.34590HepG2EIF3D
RALGAPBENSG00000170471.103788.001802983.108100.344506.375405.19670HepG2EIF4G1
RALGAPBENSG00000170471.105079.918804153.167900.290505.293304.50910HepG2ETF1
RALGAPBENSG00000170471.104831.871203142.078300.620807.485206.28270HepG2FIP1L1
RALGAPBENSG00000170471.102964.950302398.985800.305502.055301.47860HepG2G3BP1
RALGAPBENSG00000170471.101923.490501527.949700.332002.421001.58830HepG2GEMIN5
RALGAPBENSG00000170471.103135.198802577.691300.282402.409501.75870HepG2HNRNPC
RALGAPBENSG00000170471.102156.487502754.45030-0.353107.770306.69050HepG2HNRNPL
RALGAPBENSG00000170471.102248.205602560.65090-0.187702.116401.57790HepG2HNRNPU
RALGAPBENSG00000170471.103439.382502438.581200.496005.131204.23630HepG2IGF2BP2
RALGAPBENSG00000170471.101918.204402307.43670-0.266504.355703.08750HepG2KIF1C
RALGAPBENSG00000170471.103739.397602543.813300.555709.600208.17960HepG2MSI2
RALGAPBENSG00000170471.101854.827502283.90000-0.300203.649402.81530HepG2PPIL4
RALGAPBENSG00000170471.102317.938101767.220100.391303.497102.59930HepG2PRPF8
RALGAPBENSG00000170471.103154.485202455.371200.361406.319905.55890HepG2PTBP1
RALGAPBENSG00000170471.103334.599902659.256500.326404.208203.46110HepG2QKI
RALGAPBENSG00000170471.105327.829503471.286800.6180017.0791016.01530HepG2RBM22
RALGAPBENSG00000170471.103098.956502413.435300.360604.041703.24000HepG2RBM25
RALGAPBENSG00000170471.103613.180402732.603700.402908.083607.24590HepG2NELFE
RALGAPBENSG00000170471.106890.509703735.527300.883208.704907.59860HepG2RPLP0
RALGAPBENSG00000170471.102872.859001669.782500.7827015.9404014.63430HepG2RPS19
RALGAPBENSG00000170471.103265.428102545.579000.359203.726302.80120HepG2RPS2
RALGAPBENSG00000170471.102613.156101748.180100.579806.050604.93530HepG2RRP9
RALGAPBENSG00000170471.101906.225202280.38640-0.258603.794103.06030HepG2SAFB2
RALGAPBENSG00000170471.105553.058403419.220000.699502.458601.82340HepG2SF3A3
RALGAPBENSG00000170471.104399.396703463.131700.345103.300502.53590HepG2SF3B1
RALGAPBENSG00000170471.103610.829802556.382700.4981012.2449011.14060HepG2SF3B4
RALGAPBENSG00000170471.105656.218403920.703100.5286018.6993017.70110HepG2SRFBP1
RALGAPBENSG00000170471.103406.916002668.300200.352407.015006.34490HepG2SRSF1
RALGAPBENSG00000170471.103593.687702825.985800.346606.345605.45110HepG2SRSF5
RALGAPBENSG00000170471.102636.692202170.795800.280404.313803.65340HepG2SRSF9
RALGAPBENSG00000170471.103898.469403213.940300.278505.327404.51460HepG2SUCLG1
RALGAPBENSG00000170471.102936.924402280.182100.365102.929502.23630HepG2SUPV3L1
RALGAPBENSG00000170471.102642.594202203.781200.261902.392201.61300HepG2TIA1
RALGAPBENSG00000170471.103954.709402488.237000.6683015.1032014.10010HepG2TIAL1
RALGAPBENSG00000170471.102097.744102510.38750-0.259103.588102.96380HepG2TRIM56
RALGAPBENSG00000170471.103295.337902927.592600.170601.990301.46470HepG2UTP3
RALGAPBENSG00000170471.103634.473502727.577300.414002.442401.44810HepG2XRCC6
RALGAPBENSG00000170471.101495.804902244.58630-0.585505.841104.80000HepG2XRN2
RALGAPBENSG00000170471.103761.078402559.310300.5553018.9904017.51220HepG2ZC3H8
RALGAPBENSG00000170471.104494.661803334.978300.4304014.2367013.23690HepG2ZNF622
RALGAPBENSG00000170471.101710.089801285.460500.411704.079902.61310K562AARS
RALGAPBENSG00000170471.101530.671102141.71080-0.484605.601304.83830K562AGGF1
RALGAPBENSG00000170471.101649.768302228.49120-0.433804.913004.03260K562AKAP8L
RALGAPBENSG00000170471.101777.887902338.11810-0.395205.445704.11190K562ATP5C1
RALGAPBENSG00000170471.102426.306902981.32640-0.297203.118101.93680K562CPEB4
RALGAPBENSG00000170471.101682.390602217.45410-0.398404.717903.69690K562CPSF6
RALGAPBENSG00000170471.101073.919101297.60630-0.273002.306301.35790K562CSTF2
RALGAPBENSG00000170471.10989.225801266.97550-0.357002.860002.02490K562EIF4A3
RALGAPBENSG00000170471.104001.334903413.186400.229303.223802.21220K562EIF4G2
RALGAPBENSG00000170471.102002.987402578.82120-0.364603.490102.52860K562FIP1L1
RALGAPBENSG00000170471.102036.181601317.603500.6278013.3208012.09320K562FXR1
RALGAPBENSG00000170471.101740.955402117.02140-0.282202.308201.58260K562GPKOW
RALGAPBENSG00000170471.101924.075703028.38540-0.654405.145104.11100K562GRSF1
RALGAPBENSG00000170471.101621.400501933.05650-0.253602.556001.69620K562HNRNPU
RALGAPBENSG00000170471.102596.750403496.41900-0.429204.703903.67280K562HSPD1
RALGAPBENSG00000170471.101733.454402365.18220-0.448305.714904.43110K562KIF1C
RALGAPBENSG00000170471.101426.589901793.46780-0.330202.853101.99830K562MAGOH
RALGAPBENSG00000170471.101851.444102263.90240-0.290202.607901.57370K562MAK16
RALGAPBENSG00000170471.102236.725302649.57410-0.244402.299601.48410K562MBNL1
RALGAPBENSG00000170471.101597.022002066.49200-0.371803.627202.61730K562METAP2
RALGAPBENSG00000170471.101769.407402134.87360-0.270903.542602.63400K562MTPAP
RALGAPBENSG00000170471.101859.372702927.38480-0.654809.496807.72680K562PPIG
RALGAPBENSG00000170471.10938.211601261.19340-0.426803.487002.45620K562PSIP1
RALGAPBENSG00000170471.102066.092601742.443500.245702.067601.47820K562PTBP1
RALGAPBENSG00000170471.101698.403802210.45190-0.380203.631403.02130K562PUS1
RALGAPBENSG00000170471.101714.451302153.42080-0.328903.835403.15390K562RBM15
RALGAPBENSG00000170471.101293.485701613.12630-0.318602.459801.47690K562SRSF5
RALGAPBENSG00000170471.101315.290301728.82420-0.394403.331002.55270K562TARDBP
RALGAPBENSG00000170471.101350.210001667.62680-0.304602.665601.86390K562TIA1
RALGAPBENSG00000170471.102527.967802237.948800.175702.062501.32480K562WDR43
RALGAPBENSG00000170471.102464.974802953.40410-0.260802.161801.40970K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RALGAPB is not available on ENCORE database.





10 RBPs can affect the splicing of RALGAPB :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERALGAPBENSG00000170471.10chr20+371994113719949037195738371958753720279237202941-0.100000.005790.08489excludedHepG2U2AF1
SERALGAPBENSG00000170471.10chr20+371773313717743837174885371750733717971337179866-0.224000.001910.03506excludedHepG2U2AF1
SERALGAPBENSG00000170471.10chr20+371448343714501337137719371378513714614837146297-0.139000.000000.00002excludedHepG2U2AF1
SERALGAPBENSG00000170471.10chr20+371448343714501337137727371378513714614837146297-0.061000.000000.00011excludedHepG2U2AF2
SERALGAPBENSG00000170471.10chr20+371985303719863937195738371958753719941137199490-0.145000.000840.01054excludedK562AQR
SERALGAPBENSG00000170471.10chr20+371637283716385037161372371615023716841837168601-0.099000.008200.09032excludedK562PUS1
SERALGAPBENSG00000170471.10chr20+371985303719863937195738371958753720279237202941-0.521000.000160.00484excludedK562U2AF1
SERALGAPBENSG00000170471.10chr20+3719941137199490371957383719587537202792372029410.369000.000030.01469includedK562FXR2
SERALGAPBENSG00000170471.10chr20+371994113719949037195738371958753720279237202941-0.275000.000000.00159excludedK562SRSF7
SERALGAPBENSG00000170471.10chr20+371637163716385037161372371615023716841837168601-0.143000.004270.08142excludedK562RBM15
A3SSRALGAPBENSG00000170471.10chr20+371939983719412137194001371941213719115137191340-0.280000.000190.02142shorterHepG2HNRNPK
A3SSRALGAPBENSG00000170471.10chr20+3716371637163850371637283716385037161372371615020.375000.001080.02825longerHepG2U2AF2
A3SSRALGAPBENSG00000170471.10chr20+3718247737182719371825093718271937179713371798660.053000.001400.00938longerK562AQR
A3SSRALGAPBENSG00000170471.10chr20+371637163716385037163728371638503716137237161502-0.359000.000880.04450shorterK562PUS1
MXERALGAPBENSG00000170471.10chr20+3719853037198639371994113719949037195738371958753720279237202941-0.322000.000230.006152includedK562U2AF1
MXERALGAPBENSG00000170471.10chr20+37195738371958753719853037198639371869373718709637199411371994900.137000.002790.022031includedK562AQR
MXERALGAPBENSG00000170471.10chr20+37195738371958753719941137199490371869373718709637202792372029410.088000.007350.049351includedK562AQR
MXERALGAPBENSG00000170471.10chr20+3719853037198639371994113719949037195738371958753720279237202941-0.175000.002490.059382includedHepG2XRN2
MXERALGAPBENSG00000170471.10chr20+37137719371378513714483437145013371280893712827637146148371462970.082000.001220.026831includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RALGAPB is not avaliable on ENCORE database.