PSMC1

General Information

Gene Name : PSMC1
Gene ID : ENSG00000100764.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PSMC1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PSMC1	ENSG00000100764.13	253.31	194.69	224.00	ENCSR000AEF
HepG2	PSMC1	ENSG00000100764.13	144.30	202.32	173.31	ENCSR985KAT
K562	PSMC1	ENSG00000100764.13	164.40	154.08	159.24	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PSMC1 is not avaliable on ENCORE database.

Proteins bound to RNA

PSMC1 RNA is bound by 8 proteins.

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eCLIP assay for PSMC1 is not avaliable on ENCORE database.

8 proteins are bound to PSMC1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	90736450	90736552	+	CDS,intron-Proximal	5.85668	7.23238	HepG2	SF3A3
chr14	90731517	90731576	+	intron-Proximal	4.73520	7.01471	K562	TIA1
chr14	90726458	90726496	+	CDS,intron-Distal,intron-Proximal	3.74865	6.55026	K562	ZNF622
chr14	90730495	90730615	+	CDS,intron-Distal,intron-Proximal	3.66893	5.83621	K562	AQR
chr14	90736676	90736747	+	CDS,intron-Proximal	4.77248	5.60100	HepG2	PRPF8
chr14	90736117	90736174	+	intron-Distal	3.93830	5.18845	HepG2	U2AF2
chr14	90731491	90731560	+	CDS,intron-Proximal	4.97504	5.01842	HepG2	PRPF8
chr14	90726515	90726556	+	CDS,intron-Distal,intron-Proximal	4.38707	4.21675	K562	ZNF622
chr14	90729661	90729673	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.15233	3.87582	K562	ZNF622
chr14	90729661	90729675	+	5'-UTR,CDS,intron-Distal,intron-Proximal	3.78109	3.69481	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 13 entries

eCLIP assay for PSMC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PSMC1 is not available on ENCORE database.
86 RBPs can affect the levels of PSMC1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PSMC1 is not available on ENCORE database.

86 RBPs can affect the gene expression of PSMC1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PSMC1	ENSG00000100764.9	3565.69560	1736.94770	1.03750	63.76810	62.05450	HepG2	ZNF622
PSMC1	ENSG00000100764.9	2446.11040	1483.81360	0.72110	18.63550	17.17450	K562	FXR1
PSMC1	ENSG00000100764.9	947.67620	1792.02650	-0.91910	15.28770	13.81120	HepG2	TARDBP
PSMC1	ENSG00000100764.9	3342.69040	2405.26060	0.47470	13.14540	12.26950	HepG2	SRFBP1
PSMC1	ENSG00000100764.9	1328.63550	1970.70110	-0.56880	11.65400	10.31970	HepG2	HNRNPF
PSMC1	ENSG00000100764.9	1088.26240	1579.31710	-0.53730	10.74950	9.53730	HepG2	UPF1
PSMC1	ENSG00000100764.9	1504.39750	2105.13620	-0.48470	9.42330	8.38740	HepG2	RECQL
PSMC1	ENSG00000100764.9	2671.49340	1673.52000	0.67470	9.54080	8.14360	K562	PRPF8
PSMC1	ENSG00000100764.9	856.52340	1643.98360	-0.94060	9.92370	8.04520	HepG2	SMNDC1
PSMC1	ENSG00000100764.9	1285.78440	1940.58960	-0.59380	9.03890	7.79850	HepG2	IGF2BP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 98 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PSMC1 is not available on ENCORE database.

4 RBPs can affect the splicing of PSMC1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	PSMC1	ENSG00000100764.9	chr14	+	90731387	90731510			90731413	90731510	90730384	90730513	0.05100	0.00000	0.00005	longer	K562	AQR
RI	PSMC1	ENSG00000100764.9	chr14	+	90735740	90736696			90735740	90735892	90736541	90736696	0.07500	0.00000	0.00000	included	K562	AQR
SE	PSMC1	ENSG00000100764.9	chr14	+	90729972	90730191			90729661	90729786	90730384	90730513	-0.31400	0.00003	0.00245	excluded	K562	SF3B1
SE	PSMC1	ENSG00000100764.9	chr14	+	90730005	90730191			90729661	90729786	90730384	90730513	-0.06700	0.00003	0.00104	excluded	K562	HNRNPC
MXE	PSMC1	ENSG00000100764.9	chr14	+	90730005	90730191	90730384	90730513	90729661	90729786	90731413	90731510	-0.09900	0.00081	0.07370	2included	K562	NPM1

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PSMC1

General Information

Functions

Localization

Domains (AlphaFold: PSMC1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PSMC1 is not avaliable on ENCORE database.

8 proteins are bound to PSMC1 RNA:

eCLIP assay for PSMC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PSMC1 is not available on ENCORE database.

86 RBPs can affect the gene expression of PSMC1 :

The Knockdown/knockout RNA-Seq assay for PSMC1 is not available on ENCORE database.

4 RBPs can affect the splicing of PSMC1 :

The Knockdown/knockout RNA-Seq assay for PSMC1 is not avaliable on ENCORE database.