PAPD5

General Information

Gene Name       : PAPD5
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PAPD5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PAPD5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PAPD5 RNA is bound by 23 proteins.  







eCLIP assay for PAPD5 is not avaliable on ENCORE database.





23 proteins are bound to PAPD5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr165026459850264695+3'-UTR,intron-Distal3.070593.50680HepG2CSTF2
chr165026459350264682+3'-UTR,intron-Distal4.004725.98925HepG2FUBP3
chr165026546350265600+3'-UTR,intron-Distal4.094137.41225HepG2ZC3H11A
chr165026417250264226+3'-UTR,intron-Distal3.003845.30786HepG2U2AF2
chr165026538750265470+3'-UTR,intron-Distal3.829305.05351HepG2FUBP3
chr165025876350258821+CDS,intron-Proximal3.185135.12776HepG2U2AF2
chr165024531850245383+CDS,intron-Proximal4.194723.56019HepG2GRWD1
chr165024533450245397+CDS,intron-Proximal4.463794.97857HepG2AQR
chr165018814450188215+CDS,intron-Proximal5.1485115.13298HepG2PRPF8
chr165025898250259037+CDS,intron-Distal,intron-Proximal3.727574.77518HepG2U2AF2
chr165018802250188098+CDS,intron-Proximal3.607955.11891HepG2GRWD1
chr165025718550257271+CDS3.673843.57857HepG2BCLAF1
chr165024523150245318+CDS,intron-Proximal3.748335.31167HepG2GRWD1
chr165024998450250070+CDS,intron-Proximal3.570614.17155HepG2BCLAF1
chr165024998050250106+CDS,intron-Proximal3.667065.99043HepG2GRWD1
chr165024533250245412+CDS,intron-Proximal3.9137710.59445HepG2PRPF8
chr165020669550206756+intron-Distal4.639675.77028HepG2PCBP2
chr165018751150187533+intron-Distal3.669915.01580HepG2DDX3X
chr165018844250188512+intron-Distal4.293387.22863HepG2PCBP2
chr165018730250187377+intron-Distal3.050165.88293HepG2XRN2
chr165018844150188557+intron-Distal3.881903.34627K562HNRNPK
chr165018710350187140+intron-Distal3.478693.52528HepG2FAM120A
chr165021970350219775+intron-Distal4.771195.68967HepG2PCBP2
chr165018730350187402+intron-Distal3.8611020.45663HepG2PRPF4
chr165021961550219703+intron-Distal3.261783.34232HepG2PCBP2
chr165025367150253793+intron-Distal5.467288.93487K562PTBP1
chr165018746750187530+intron-Distal4.404675.59467HepG2PRPF4
chr165022011250220183+intron-Distal4.237003.45317HepG2HNRNPL
chr165018845650188551+intron-Distal3.8722114.74705HepG2DDX59
chr165019249950192601+intron-Distal3.358863.11000HepG2HNRNPM
chr165018839750188456+intron-Distal4.629029.07358HepG2DDX59
chr165018730450187389+intron-Distal4.5532116.63322HepG2GTF2F1
chr165019551950195574+intron-Distal4.255693.16986HepG2QKI
chr165019169150191779+intron-Distal3.934893.61897HepG2HNRNPC
chr165018833950188442+intron-Distal3.290464.82056HepG2PCBP2
chr165020502950205081+intron-Distal3.036633.20171HepG2ILF3
chr165018730450187406+intron-Distal3.9053019.36306HepG2DDX3X
chr165025367850253776+intron-Distal4.5023515.30908HepG2PTBP1
chr165018730550187414+intron-Distal3.742663.41960K562GTF2F1
chr165025940350259489+intron-Distal4.7485111.16135HepG2QKI
chr165018922650189268+intron-Distal4.525693.72755K562EIF4G2
chr165018834250188486+intron-Distal4.4140521.14508HepG2HNRNPK
chr165018848650188550+intron-Distal5.4640011.41931HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PAPD5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PAPD5 is not available on ENCORE database.

  • 96 RBPs can affect the levels of PAPD5.  








The Knockdown/knockout RNA-Seq assay for PAPD5 is not available on ENCORE database.





96 RBPs can affect the gene expression of PAPD5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PAPD5ENSG00000121274.8553.31630836.46760-0.596203.104202.46560HepG2ACO1
PAPD5ENSG00000121274.8755.444901404.59160-0.894809.838008.90190HepG2AKAP1
PAPD5ENSG00000121274.8404.23920840.59580-1.056206.740605.59820HepG2AKAP8L
PAPD5ENSG00000121274.8886.417101162.18920-0.390802.672801.90150HepG2ASCC1
PAPD5ENSG00000121274.8508.70870883.18890-0.795906.491605.02630HepG2BCCIP
PAPD5ENSG00000121274.8497.69670767.47170-0.624804.461503.34280HepG2BCLAF1
PAPD5ENSG00000121274.8854.169401691.45340-0.985707.108905.53330HepG2CCAR1
PAPD5ENSG00000121274.8598.18350961.14500-0.684204.128503.18730HepG2CNOT7
PAPD5ENSG00000121274.8710.070901122.94620-0.6613010.967209.85430HepG2CELF1
PAPD5ENSG00000121274.8772.444901207.49240-0.6445013.8993012.45270HepG2DAZAP1
PAPD5ENSG00000121274.81091.96240645.772000.7577010.671608.92210HepG2DDX24
PAPD5ENSG00000121274.8562.36700868.33220-0.626704.228203.29370HepG2DDX55
PAPD5ENSG00000121274.8609.322501155.78150-0.9236010.197009.09280HepG2DDX6
PAPD5ENSG00000121274.8681.39670899.59630-0.400804.054203.21570HepG2DNAJC21
PAPD5ENSG00000121274.8486.94720891.68140-0.8728019.2184017.64950HepG2DNAJC2
PAPD5ENSG00000121274.8703.131501111.11900-0.660106.292905.41800HepG2EIF2S1
PAPD5ENSG00000121274.8359.41790657.37720-0.871107.888306.43680HepG2EIF3D
PAPD5ENSG00000121274.8968.22010623.205700.635507.635906.00280HepG2EIF3G
PAPD5ENSG00000121274.8373.42470587.43470-0.653605.864304.12430HepG2FAM120A
PAPD5ENSG00000121274.8878.708901213.36270-0.465601.959301.30440HepG2FIP1L1
PAPD5ENSG00000121274.8503.38200721.06740-0.518503.378302.51380HepG2FUBP3
PAPD5ENSG00000121274.8871.598601238.87960-0.507304.254403.40980HepG2FXR1
PAPD5ENSG00000121274.8710.628201149.27190-0.693606.616905.61020HepG2G3BP1
PAPD5ENSG00000121274.8556.74370762.46600-0.453702.347901.41240HepG2GNB2L1
PAPD5ENSG00000121274.8400.03270908.21500-1.1829019.1580017.70750HepG2HNRNPA1
PAPD5ENSG00000121274.8639.504501010.23090-0.659707.129506.05600HepG2HNRNPC
PAPD5ENSG00000121274.8559.22710832.49660-0.574003.017501.43780HepG2HNRNPD
PAPD5ENSG00000121274.8677.442201163.67330-0.780509.482508.25210HepG2HNRNPK
PAPD5ENSG00000121274.8732.505301099.94810-0.5865011.029309.76080HepG2HNRNPL
PAPD5ENSG00000121274.8763.362901240.86350-0.700907.571006.58740HepG2HNRNPLL
PAPD5ENSG00000121274.8618.832701003.55110-0.6975012.4934011.28300HepG2HNRNPU
PAPD5ENSG00000121274.8444.909501025.09260-1.2042037.6339035.37680HepG2ILF2
PAPD5ENSG00000121274.8653.19510936.89790-0.520402.917601.55370HepG2ILF3
PAPD5ENSG00000121274.8787.020901175.01030-0.578204.091202.85280HepG2KHSRP
PAPD5ENSG00000121274.8508.48870746.80040-0.554503.972102.60650HepG2LARP7
PAPD5ENSG00000121274.8913.646801246.25720-0.447903.032702.37490HepG2MATR3
PAPD5ENSG00000121274.8434.13520688.03930-0.664303.596402.40190HepG2METAP2
PAPD5ENSG00000121274.81740.499801275.621000.448203.522402.81190HepG2NCBP2
PAPD5ENSG00000121274.8548.50670878.28850-0.679202.815701.91870HepG2PABPC1
PAPD5ENSG00000121274.8722.42620993.33180-0.459405.749404.59080HepG2PARN
PAPD5ENSG00000121274.8615.781301090.69280-0.8248017.0811015.77840HepG2PCBP1
PAPD5ENSG00000121274.8670.18150895.08580-0.417504.302103.40440HepG2PPIL4
PAPD5ENSG00000121274.81018.50950830.080600.295002.702601.93630HepG2PRPF4
PAPD5ENSG00000121274.8856.359601109.81530-0.374004.119803.48210HepG2PTBP1
PAPD5ENSG00000121274.8953.511201213.28230-0.347605.077804.32350HepG2PUM1
PAPD5ENSG00000121274.8966.140601212.40610-0.327602.946802.25390HepG2PUM2
PAPD5ENSG00000121274.8973.906301226.55750-0.332803.217402.30030HepG2RBM15
PAPD5ENSG00000121274.8796.754901090.85960-0.453304.398603.56440HepG2RBM25
PAPD5ENSG00000121274.8448.47330731.23170-0.705304.675003.29010HepG2RCC2
PAPD5ENSG00000121274.81964.130301068.085100.878808.641707.53840HepG2RPLP0
PAPD5ENSG00000121274.8610.38080847.74400-0.473902.982501.86680HepG2RPS5
PAPD5ENSG00000121274.8604.68830893.70100-0.563608.379007.34830HepG2SAFB2
PAPD5ENSG00000121274.82245.846701240.839600.855808.354107.13260HepG2SF3A3
PAPD5ENSG00000121274.8981.804101155.47060-0.235002.043901.52380HepG2SF3B4
PAPD5ENSG00000121274.8943.233801095.88370-0.216402.025901.40810HepG2SLBP
PAPD5ENSG00000121274.8772.782501042.19690-0.431506.507005.58660HepG2SMN1
PAPD5ENSG00000121274.81141.479601371.10100-0.264403.005502.49030HepG2SRFBP1
PAPD5ENSG00000121274.8931.682301128.48340-0.276502.765402.13960HepG2SRSF5
PAPD5ENSG00000121274.81681.587701190.415800.498309.312508.47920HepG2SSB
PAPD5ENSG00000121274.8676.513101057.43840-0.644404.478602.87740HepG2SSRP1
PAPD5ENSG00000121274.8661.663101283.41310-0.9558026.8066025.19620HepG2SUCLG1
PAPD5ENSG00000121274.8387.32300579.43700-0.581103.493202.38650HepG2TFIP11
PAPD5ENSG00000121274.8819.17210996.09700-0.282102.075501.34880HepG2TIA1
PAPD5ENSG00000121274.8745.81910975.10150-0.386703.595903.04150HepG2TIAL1
PAPD5ENSG00000121274.8580.85720983.85680-0.7603014.5709013.42050HepG2TRIM56
PAPD5ENSG00000121274.8378.69430510.68650-0.431402.256601.57050HepG2UCHL5
PAPD5ENSG00000121274.81330.900301100.434000.274203.169202.43220HepG2UPF1
PAPD5ENSG00000121274.8527.97680791.68140-0.584402.733701.73520HepG2UPF2
PAPD5ENSG00000121274.8893.249301131.09970-0.340603.659202.47170HepG2UTP18
PAPD5ENSG00000121274.8462.81680850.95720-0.878608.677107.40970HepG2XRN2
PAPD5ENSG00000121274.8257.36730392.68520-0.609504.080603.28550K562AKAP8L
PAPD5ENSG00000121274.8883.94060582.090500.602605.296504.52990K562AQR
PAPD5ENSG00000121274.8257.87320342.15810-0.408002.344501.46340K562BCLAF1
PAPD5ENSG00000121274.8353.53900473.65730-0.422002.204301.43150K562BOP1
PAPD5ENSG00000121274.8255.98970405.71280-0.664402.856501.55220K562CIRBP
PAPD5ENSG00000121274.8178.16180259.57790-0.543002.489001.49400K562CSTF2
PAPD5ENSG00000121274.81021.68460668.984200.610809.510408.38860K562DDX47
PAPD5ENSG00000121274.8547.54040422.596000.373602.613601.76630K562DKC1
PAPD5ENSG00000121274.8315.67130489.86790-0.634004.101703.25170K562EIF2S2
PAPD5ENSG00000121274.8292.90780173.517900.755302.864801.84070K562EIF3A
PAPD5ENSG00000121274.8841.35140703.595400.257902.194001.35290K562EIF4G2
PAPD5ENSG00000121274.8326.38770570.41320-0.805405.567804.34100K562FIP1L1
PAPD5ENSG00000121274.8371.90360512.45090-0.462502.822601.95950K562FMR1
PAPD5ENSG00000121274.8508.13550271.643000.9034010.652709.55160K562FXR1
PAPD5ENSG00000121274.8370.07170480.81640-0.377702.063001.37350K562GPKOW
PAPD5ENSG00000121274.8261.90670383.54460-0.550303.667002.42750K562HNRNPA1
PAPD5ENSG00000121274.8238.36660334.58540-0.489201.875801.37260K562HNRNPC
PAPD5ENSG00000121274.8454.56940604.57360-0.411402.862301.78370K562HNRNPL
PAPD5ENSG00000121274.8559.27630773.42080-0.467702.544901.77850K562HSPD1
PAPD5ENSG00000121274.8237.68290378.23330-0.670203.130002.01490K562IGF2BP2
PAPD5ENSG00000121274.8273.53730469.33620-0.778906.586905.20620K562METAP2
PAPD5ENSG00000121274.8343.15840446.58190-0.380102.524001.75050K562MTPAP
PAPD5ENSG00000121274.8217.38080315.97830-0.539602.734401.45270K562NONO
PAPD5ENSG00000121274.8200.96880329.28030-0.712302.876401.41430K562NUSAP1
PAPD5ENSG00000121274.8486.69820354.027100.459102.400301.49240K562PCBP2
PAPD5ENSG00000121274.8380.80040647.46840-0.765805.409104.20110K562PPIG
PAPD5ENSG00000121274.8443.40080311.854000.507602.650501.91610K562PRPF8
PAPD5ENSG00000121274.8173.42530299.96360-0.790503.637302.58100K562PSIP1
PAPD5ENSG00000121274.81130.06000767.699100.557705.830304.64920K562PUF60
PAPD5ENSG00000121274.8163.85480279.34280-0.769604.208802.51740K562RBM25
PAPD5ENSG00000121274.8158.64090273.54620-0.786003.896102.71780K562RCC2
PAPD5ENSG00000121274.8214.49010301.82890-0.492802.216801.31320K562SUPV3L1
PAPD5ENSG00000121274.8510.62380312.810800.706906.725405.43520K562SYNCRIP
PAPD5ENSG00000121274.8178.48720275.20510-0.624703.077701.31090K562TFIP11
PAPD5ENSG00000121274.8186.64340288.53080-0.628402.637601.72640K562TIAL1
PAPD5ENSG00000121274.8394.62010540.11770-0.452803.252901.87110K562TROVE2
PAPD5ENSG00000121274.8217.35300319.50530-0.555802.897701.85010K562UCHL5
PAPD5ENSG00000121274.8598.36010468.147600.354002.902802.03570K562WDR43
PAPD5ENSG00000121274.8211.11250325.43510-0.624403.658202.19690K562XRN2
PAPD5ENSG00000121274.8450.08410655.80900-0.543104.651403.48900K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PAPD5 is not available on ENCORE database.





2 RBPs can affect the splicing of PAPD5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXEPAPD5ENSG00000121274.8chr16+50256216502563455025708450257298502514665025157450258567502586940.083000.006050.081501includedHepG2FTO
MXEPAPD5ENSG00000121274.8chr16+50256216502563455025708450257298502514665025157450258567502586940.157000.002940.064731includedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PAPD5 is not avaliable on ENCORE database.