NUTF2

General Information

Gene Name       : NUTF2
Gene ID             : ENSG00000102898.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: NUTF2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NUTF2ENSG00000102898.1196.21125.71110.96ENCSR000AEF
HepG2NUTF2ENSG00000102898.11256.02188.58222.30ENCSR985KAT
K562NUTF2ENSG00000102898.11143.80158.50151.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NUTF2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NUTF2 RNA is bound by 17 proteins.  







eCLIP assay for NUTF2 is not avaliable on ENCORE database.





17 proteins are bound to NUTF2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr166789900367899027+3'-UTR,intron-Proximal4.464867.49943HepG2DDX3X
chr166790491867904936+3'-UTR5.0380427.20718HepG2STAU2
chr166790496067904984+3'-UTR5.7164027.82245HepG2STAU2
chr166790508567905145+3'-UTR3.7766323.32188HepG2LARP4
chr166790482267904885+3'-UTR5.1770143.68175HepG2STAU2
chr166790508467905133+3'-UTR3.351063.37783HepG2TIAL1
chr166790508667905120+3'-UTR3.6118526.27485HepG2STAU2
chr166790493767904947+3'-UTR4.8327524.24320HepG2STAU2
chr166790485567904912+3'-UTR3.4220313.94233HepG2LARP4
chr166790497667905018+3'-UTR4.2469611.58326K562UPF1
chr166790524567905278+3'-UTR3.656573.37083K562UPF1
chr166790488567904912+3'-UTR5.1648848.42629HepG2STAU2
chr166790484867904917+3'-UTR5.1642316.05326K562PCBP1
chr166790508567905118+3'-UTR3.8154735.15158K562UPF1
chr166790491867904972+3'-UTR3.462687.37102HepG2LARP4
chr166790498467905029+3'-UTR4.9763024.45458HepG2STAU2
chr166790481667904855+3'-UTR3.575987.59810HepG2LARP4
chr166790479467904847+3'-UTR,CDS3.854385.44251HepG2RPS3
chr166790508567905141+3'-UTR3.709269.81529HepG2UPF1
chr166790494767904960+3'-UTR5.0969133.28744HepG2STAU2
chr166790485667904935+3'-UTR4.5060112.07560HepG2PCBP1
chr166790484567904965+3'-UTR6.1405045.62056HepG2UPF1
chr166789900367899046+3'-UTR,CDS,intron-Proximal5.1226540.86922K562DDX3X
chr166790484767904981+3'-UTR3.1246315.63871HepG2RPS3
chr166788083867880892+5'-UTR,intron-Proximal4.5340320.52963HepG2DDX3X
chr166788084667880931+5'-UTR,intron-Proximal4.756275.68078HepG2AQR
chr166788082567880889+5'-UTR,intron-Proximal4.5599525.64778K562DDX3X
chr166790464767904707+CDS,intron-Proximal3.923117.09030K562SF3B4
chr166790246767902493+CDS3.6922913.18786K562YBX3
chr166790249367902502+CDS3.230298.60308K562YBX3
chr166789912667899207+CDS,intron-Proximal4.297196.95612HepG2PRPF8
chr166790250067902544+CDS,intron-Proximal5.027316.44303K562AQR
chr166790242067902467+CDS3.393798.86025K562YBX3
chr166790246667902580+CDS,intron-Proximal4.2900622.96265HepG2PRPF8
chr166789904667899117+CDS4.0502419.99482K562DDX3X
chr166790464367904734+CDS,intron-Proximal3.549938.16706HepG2U2AF2
chr166790241767902480+CDS4.759197.34329K562IGF2BP2
chr166788626367886287+intron-Distal3.132025.25853HepG2HNRNPC
chr166788628767886312+intron-Distal3.616296.46423HepG2HNRNPC
chr166789134967891409+intron-Distal4.522155.54796HepG2LIN28B
chr166789150967891630+intron-Distal4.1186510.28676HepG2QKI
chr166788905467889097+intron-Distal4.021413.62366HepG2HNRNPM
chr166789913267899178+intron-Proximal3.721834.49024K562AQR
chr166790463067904695+intron-Proximal3.223463.20886K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NUTF2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NUTF2 is not available on ENCORE database.

  • 81 RBPs can affect the levels of NUTF2.  








The Knockdown/knockout RNA-Seq assay for NUTF2 is not available on ENCORE database.





81 RBPs can affect the gene expression of NUTF2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NUTF2ENSG00000102898.72249.585201542.870800.5439013.5251012.39550HepG2ACO1
NUTF2ENSG00000102898.71352.909901861.72300-0.460603.373702.79460HepG2AKAP1
NUTF2ENSG00000102898.71933.107101549.972400.318604.325503.38170HepG2AKAP8L
NUTF2ENSG00000102898.72039.361002389.04300-0.228302.776202.09010HepG2AUH
NUTF2ENSG00000102898.7928.087101424.82190-0.618405.599504.36700HepG2BCLAF1
NUTF2ENSG00000102898.71636.276502512.02490-0.618408.585607.60100HepG2BOP1
NUTF2ENSG00000102898.71896.145202495.08650-0.396004.558103.16440HepG2CPSF7
NUTF2ENSG00000102898.71463.971001807.80210-0.304302.232301.32010HepG2YBX3
NUTF2ENSG00000102898.72564.120202250.872600.187901.941201.38420HepG2CELF1
NUTF2ENSG00000102898.71170.046101492.33320-0.351003.299602.29780HepG2DDX24
NUTF2ENSG00000102898.71178.900901476.06350-0.324302.815902.13270HepG2DKC1
NUTF2ENSG00000102898.71042.091301404.28860-0.430402.693401.60330HepG2AGO1
NUTF2ENSG00000102898.71145.672901440.07020-0.329902.985801.86800HepG2EIF3G
NUTF2ENSG00000102898.72366.463601584.634500.578504.306503.46080HepG2EIF4B
NUTF2ENSG00000102898.71584.738402287.24650-0.529403.901602.94420HepG2EIF4G2
NUTF2ENSG00000102898.72350.944702742.96340-0.222502.662702.07050HepG2ETF1
NUTF2ENSG00000102898.72063.940101507.503300.453105.433704.26300HepG2EWSR1
NUTF2ENSG00000102898.7959.287501189.46720-0.310302.390101.30690HepG2FAM120A
NUTF2ENSG00000102898.71018.974801341.95980-0.397202.875501.58080HepG2FKBP4
NUTF2ENSG00000102898.71290.219802310.08800-0.840303.946402.73040HepG2FTO
NUTF2ENSG00000102898.72166.176801642.225000.399403.215902.47140HepG2FXR1
NUTF2ENSG00000102898.72606.432103106.44430-0.253203.805502.97660HepG2HNRNPF
NUTF2ENSG00000102898.72523.912503058.94110-0.277403.163302.39310HepG2IGF2BP1
NUTF2ENSG00000102898.71220.432001410.26730-0.208602.253301.33090HepG2KIF1C
NUTF2ENSG00000102898.71664.322602318.95690-0.478503.135101.80160HepG2KRR1
NUTF2ENSG00000102898.74386.728402900.318800.596804.180103.15260HepG2LARP4
NUTF2ENSG00000102898.72012.866801642.799700.293001.888701.34180HepG2MAGOH
NUTF2ENSG00000102898.72552.230801651.942800.627506.352705.42800HepG2MATR3
NUTF2ENSG00000102898.71874.195102476.00240-0.401704.727003.68970HepG2MSI2
NUTF2ENSG00000102898.71882.149002544.28670-0.434902.309501.42900HepG2MTPAP
NUTF2ENSG00000102898.71621.486102079.17620-0.358703.500002.13070HepG2NAA15
NUTF2ENSG00000102898.71580.875702212.16430-0.484705.132804.12660HepG2NSUN2
NUTF2ENSG00000102898.71085.965801505.58750-0.471303.822602.98500HepG2PABPC4
NUTF2ENSG00000102898.71353.716301766.19910-0.383705.072604.10290HepG2PPIL4
NUTF2ENSG00000102898.7593.316201957.57010-1.7222066.5216064.26940HepG2QKI
NUTF2ENSG00000102898.73475.519802292.605200.6001014.6326013.63100HepG2RBM22
NUTF2ENSG00000102898.71312.645401776.65650-0.436704.846303.97620HepG2RBM25
NUTF2ENSG00000102898.71529.311301873.63400-0.293003.035702.39380HepG2RECQL
NUTF2ENSG00000102898.71079.157601704.55530-0.659504.566603.36200HepG2RPS10
NUTF2ENSG00000102898.72186.243301294.820200.7556013.4444012.21900HepG2RPS19
NUTF2ENSG00000102898.71753.748101374.394400.351502.337401.59770HepG2RPS2
NUTF2ENSG00000102898.71413.752401763.47050-0.318904.773703.96690HepG2SAFB2
NUTF2ENSG00000102898.73612.302102303.679300.648904.092003.26440HepG2SF3A3
NUTF2ENSG00000102898.71989.148102469.55450-0.312102.487201.81580HepG2SF3B1
NUTF2ENSG00000102898.71688.001002196.64360-0.380007.369706.30950HepG2SLBP
NUTF2ENSG00000102898.72037.414002747.79110-0.431502.330201.61590HepG2SNRNP70
NUTF2ENSG00000102898.72926.343502589.404900.176402.134401.67640HepG2SRFBP1
NUTF2ENSG00000102898.72629.315601964.281800.420608.676507.94500HepG2SRSF1
NUTF2ENSG00000102898.72610.440103052.04710-0.225503.256902.50900HepG2SRSF7
NUTF2ENSG00000102898.71278.005001598.07590-0.322404.324503.66330HepG2SRSF9
NUTF2ENSG00000102898.71543.194102248.20220-0.5429012.7236011.78250HepG2SSB
NUTF2ENSG00000102898.71147.562201620.80620-0.498102.880901.65430HepG2SUB1
NUTF2ENSG00000102898.72344.273001604.971600.546504.877404.01770HepG2SUPV3L1
NUTF2ENSG00000102898.71470.549101765.66350-0.263902.458901.92640HepG2TAF15
NUTF2ENSG00000102898.71853.359402431.51840-0.391702.454601.76640HepG2TARDBP
NUTF2ENSG00000102898.71180.923201622.30830-0.458105.548404.37890HepG2TIA1
NUTF2ENSG00000102898.71670.625201941.35980-0.216702.363701.83400HepG2TRIM56
NUTF2ENSG00000102898.73036.431701572.714000.949002.700901.72540HepG2U2AF2
NUTF2ENSG00000102898.72845.839601972.450200.5288013.5251012.35050HepG2UTP3
NUTF2ENSG00000102898.73128.863901928.935400.6977021.4010019.93500K562AGGF1
NUTF2ENSG00000102898.73057.369402007.118500.607104.476703.63860K562AKAP8L
NUTF2ENSG00000102898.71725.748702258.75440-0.388303.570502.92000K562AQR
NUTF2ENSG00000102898.71240.368101466.17840-0.241302.633001.69920K562BCLAF1
NUTF2ENSG00000102898.71495.211802222.97710-0.572103.887102.85210K562BOP1
NUTF2ENSG00000102898.72482.549603096.38310-0.318804.836903.34810K562CPEB4
NUTF2ENSG00000102898.71888.303402363.62920-0.323903.389002.51770K562CPSF6
NUTF2ENSG00000102898.72486.893803204.54600-0.365806.582805.63880K562DDX47
NUTF2ENSG00000102898.72827.528502159.967700.388405.682304.37210K562DKC1
NUTF2ENSG00000102898.71484.961202006.90430-0.434506.994205.92760K562EIF2S2
NUTF2ENSG00000102898.71206.89230967.115200.319403.192601.93410K562EIF4B
NUTF2ENSG00000102898.71296.94880937.414500.468305.571303.61390K562EWSR1
NUTF2ENSG00000102898.73545.803902650.438000.419804.603303.49010K562FIP1L1
NUTF2ENSG00000102898.71398.677002038.48340-0.543405.478104.14000K562FTO
NUTF2ENSG00000102898.71325.922101013.130900.388104.344902.05710K562FUBP3
NUTF2ENSG00000102898.71500.682901116.820900.426105.853705.02150K562FXR1
NUTF2ENSG00000102898.7681.199101011.29740-0.570103.910103.03440K562G3BP2
NUTF2ENSG00000102898.7946.560901395.53220-0.560005.446303.43900K562GEMIN5
NUTF2ENSG00000102898.71735.185902256.65750-0.379103.750602.83160K562GPKOW
NUTF2ENSG00000102898.71499.620201944.73950-0.375003.824703.13680K562HNRNPC
NUTF2ENSG00000102898.71454.607001926.97400-0.405702.471201.59330K562KRR1
NUTF2ENSG00000102898.73168.193002386.289000.408804.613903.37680K562MBNL1
NUTF2ENSG00000102898.72235.209701672.607700.418202.629501.77320K562NAA15
NUTF2ENSG00000102898.71941.534202754.09450-0.504404.875503.77430K562PCBP3
NUTF2ENSG00000102898.71508.423802112.47280-0.485906.738105.49890K562POLR2G
NUTF2ENSG00000102898.73507.115601990.698600.816906.642805.84320K562PUS1
NUTF2ENSG00000102898.72984.112301939.480200.6215013.1385011.84170K562RBM15
NUTF2ENSG00000102898.72219.284101177.132200.914702.511401.38690K562SF1
NUTF2ENSG00000102898.71671.738202146.25850-0.360502.525001.59750K562SF3B1
NUTF2ENSG00000102898.71917.714701508.225200.346403.014301.93190K562SRFBP1
NUTF2ENSG00000102898.71516.629301131.950500.422004.449903.55730K562SRSF1
NUTF2ENSG00000102898.72571.610603477.46330-0.435404.573602.77600K562SSRP1
NUTF2ENSG00000102898.72288.770901781.862600.361103.503102.41540K562TRIM56
NUTF2ENSG00000102898.71936.708603100.17680-0.678709.487006.84720K562TRIP6
NUTF2ENSG00000102898.71037.247901387.74870-0.420003.586702.41430K562UCHL5
NUTF2ENSG00000102898.72026.416902456.30900-0.277602.675601.84270K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NUTF2 is not available on ENCORE database.





3 RBPs can affect the splicing of NUTF2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENUTF2ENSG00000102898.7chr16+6788118067881359678808376788088867899004678991320.074000.000000.00000includedK562AQR
SENUTF2ENSG00000102898.7chr16+6788118067881359678808376788088867899004678991320.052000.000060.00213includedK562U2AF1
SENUTF2ENSG00000102898.7chr16+6788118067881359678808376788088867899004678991320.084000.000000.00010includedK562HNRNPC
A3SSNUTF2ENSG00000102898.7chr16+679047026790522667905101679052266790240367902502-0.083000.000000.00000shorterHepG2U2AF1
A3SSNUTF2ENSG00000102898.7chr16+679047026790522667905101679052266790240367902502-0.056000.001040.04722shorterK562U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NUTF2 is not avaliable on ENCORE database.