NTRK1

General Information

Gene Name       : NTRK1
Gene ID             : ENSG00000198400.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NTRK1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NTRK1ENSG00000198400.110.000.000.00ENCSR000AEF
HepG2NTRK1ENSG00000198400.110.000.000.00ENCSR985KAT
K562NTRK1ENSG00000198400.1111.655.288.46ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NTRK1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NTRK1 RNA is bound by 11 proteins.  







eCLIP assay for NTRK1 is not avaliable on ENCORE database.





11 proteins are bound to NTRK1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1156845927156845980+3'-UTR,CDS3.199873.26275K562BUD13
chr1156845456156845519+3'-UTR,CDS,intron-Proximal5.1311410.49968K562EIF4G2
chr1156845926156845984+3'-UTR,CDS3.483403.90826K562ZNF622
chr1156849121156849188+3'-UTR,CDS,intron-Proximal3.088683.26275K562BUD13
chr1156849803156849943+3'-UTR,CDS4.159137.58738K562SRSF1
chr1156851183156851277+3'-UTR,CDS,intron-Proximal3.365984.38107K562AQR
chr1156849925156850010+3'-UTR,CDS,intron-Proximal3.407394.17944K562BUD13
chr1156845904156845973+3'-UTR,CDS5.370766.53290K562DDX24
chr1156849731156849800+3'-UTR,CDS,intron-Proximal3.930434.22551K562SF3B4
chr1156851224156851275+3'-UTR,CDS,intron-Proximal3.376694.17944K562BUD13
chr1156849145156849224+3'-UTR,CDS,intron-Proximal6.6673618.58475K562AQR
chr1156849790156849826+3'-UTR,CDS,intron-Proximal5.9898512.46873K562AQR
chr1156838341156838432+CDS,intron-Distal4.490505.05122K562DDX24
chr1156833129156833241+intron-Distal5.588107.91717K562PTBP1
chr1156833888156834047+intron-Distal,intron-Proximal5.151397.78973K562TARDBP
chr1156834058156834119+intron-Distal,intron-Proximal4.984466.42318K562EIF4G2
chr1156845532156845723+intron-Distal,intron-Proximal3.298724.38724K562HNRNPK
chr1156845519156845583+intron-Distal,intron-Proximal4.522348.97537K562EIF4G2
chr1156833491156833541+intron-Distal5.067225.62492K562EIF4G2
chr1156850078156850178+intron-Distal,intron-Proximal3.611624.79909K562HNRNPK
chr1156838861156838903+intron-Distal4.289863.42734K562PTBP1
chr1156845078156845140+intron-Distal4.940734.19739K562EIF4G2
chr1156833699156833778+intron-Distal5.212098.34301K562TARDBP
chr1156845506156845599+intron-Distal,intron-Proximal3.810266.63711K562TARDBP
chr1156845506156845540+intron-Proximal5.015524.48364K562DDX24
chr1156846124156846175+intron-Proximal4.321663.49003K562PRPF8
chr1156849156156849224+intron-Proximal3.856865.25185K562PRPF8
chr1156849949156850017+intron-Proximal5.8659811.65826K562AQR
chr1156849765156849790+intron-Proximal4.4220211.31344K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NTRK1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NTRK1 is not available on ENCORE database.

  • 77 RBPs can affect the levels of NTRK1.  








The Knockdown/knockout RNA-Seq assay for NTRK1 is not available on ENCORE database.





77 RBPs can affect the gene expression of NTRK1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NTRK1ENSG00000198400.7435.29800609.40350-0.485403.677602.50530K562AKAP8
NTRK1ENSG00000198400.7509.44260918.61800-0.850509.914707.51480K562APOBEC3C
NTRK1ENSG00000198400.7322.72800893.95930-1.4699022.7713021.26830K562AQR
NTRK1ENSG00000198400.7422.59480605.49610-0.518804.883503.63200K562ATP5C1
NTRK1ENSG00000198400.71541.906301058.618200.542406.571003.56180K562AUH
NTRK1ENSG00000198400.7291.26940471.21270-0.694003.339402.15810K562CCAR1
NTRK1ENSG00000198400.7257.97970514.63430-0.996304.307701.99960K562YBX3
NTRK1ENSG00000198400.7986.833001280.29080-0.375603.966302.78790K562CELF1
NTRK1ENSG00000198400.7635.76050502.073200.340502.601701.42960K562DDX21
NTRK1ENSG00000198400.7558.92430349.640200.676705.866604.28450K562DDX3X
NTRK1ENSG00000198400.7332.49700683.56400-1.039707.698306.68570K562DDX47
NTRK1ENSG00000198400.7590.92570354.472400.737208.553605.96110K562DDX6
NTRK1ENSG00000198400.7355.54360621.06500-0.8047010.677708.72730K562DKC1
NTRK1ENSG00000198400.7278.14690537.08570-0.949304.440302.19520K562DNAJC2
NTRK1ENSG00000198400.71739.06930482.974901.8482026.3875024.55480K562EIF2S2
NTRK1ENSG00000198400.7156.05340479.28530-1.618809.387607.50980K562EIF3A
NTRK1ENSG00000198400.762.24330316.12130-2.344505.155703.68900K562EIF3D
NTRK1ENSG00000198400.7122.49190365.26120-1.5762017.0967014.91120K562EIF4A3
NTRK1ENSG00000198400.7593.057301041.09780-0.8119015.0202012.93510K562EIF4G2
NTRK1ENSG00000198400.7674.94680519.617800.377202.717901.46430K562EXOSC5
NTRK1ENSG00000198400.7166.00530318.61040-0.940606.109704.31300K562FKBP4
NTRK1ENSG00000198400.7186.22100379.85170-1.028408.955307.93900K562FXR1
NTRK1ENSG00000198400.716.64680103.41360-2.635108.916707.50100K562G3BP2
NTRK1ENSG00000198400.7444.77160653.58940-0.555303.705602.39480K562GLRX3
NTRK1ENSG00000198400.7413.32770238.723000.791803.191502.34120K562GPKOW
NTRK1ENSG00000198400.7141.26790366.55360-1.3756014.0508012.78850K562HNRNPC
NTRK1ENSG00000198400.7923.86490396.816501.219106.817905.57680K562HSPD1
NTRK1ENSG00000198400.7139.75740208.13220-0.574602.656401.49750K562IGF2BP3
NTRK1ENSG00000198400.7293.58440605.09070-1.043405.740103.65400K562ILF2
NTRK1ENSG00000198400.7420.84770612.48270-0.541404.384403.31480K562KIF1C
NTRK1ENSG00000198400.7546.46970355.278400.621103.182701.66830K562LARP7
NTRK1ENSG00000198400.7117.01770215.02590-0.877805.446104.25370K562MAGOH
NTRK1ENSG00000198400.7316.86810214.582400.562303.364302.33380K562MATR3
NTRK1ENSG00000198400.7386.68500687.17590-0.8295012.2685010.70430K562MTPAP
NTRK1ENSG00000198400.7498.98260291.645900.774702.678701.41470K562NONO
NTRK1ENSG00000198400.770.04180210.20980-1.5855013.0476010.21840K562PCBP1
NTRK1ENSG00000198400.7285.60870660.94960-1.210507.714506.32530K562PCBP3
NTRK1ENSG00000198400.7796.810301069.77040-0.425003.661102.01750K562PNPT1
NTRK1ENSG00000198400.7201.34620506.94900-1.3322014.3737012.61220K562POLR2G
NTRK1ENSG00000198400.7598.87550332.388100.849303.831802.84340K562PPIG
NTRK1ENSG00000198400.7104.11300287.51310-1.465503.090602.29740K562PRPF8
NTRK1ENSG00000198400.7578.01550328.683400.814305.114903.83530K562PSIP1
NTRK1ENSG00000198400.7633.471001135.89230-0.8425011.379409.71750K562PUF60
NTRK1ENSG00000198400.7618.308801208.37010-0.9667019.1874016.32320K562PUM1
NTRK1ENSG00000198400.71448.475401183.789500.291002.580501.65140K562PUM2
NTRK1ENSG00000198400.7302.62120200.298100.595303.186502.27810K562RBM22
NTRK1ENSG00000198400.752.4023097.93980-0.902302.923201.54880K562RBM25
NTRK1ENSG00000198400.7336.98910195.272400.787105.356703.22680K562RBM34
NTRK1ENSG00000198400.7312.09860210.787800.566102.933301.80320K562NELFE
NTRK1ENSG00000198400.7321.38310591.06580-0.879005.082802.85060K562RPS3A
NTRK1ENSG00000198400.7417.99250765.37780-0.872708.028105.09720K562SAFB2
NTRK1ENSG00000198400.7251.16820451.77260-0.846907.381505.63820K562SAFB
NTRK1ENSG00000198400.7276.60710467.04980-0.755706.076803.95490K562SDAD1
NTRK1ENSG00000198400.7280.36100497.57120-0.827602.629401.47100K562SF1
NTRK1ENSG00000198400.7616.81350753.42730-0.288602.042101.33400K562SF3A3
NTRK1ENSG00000198400.7305.05810518.90680-0.766403.675902.19800K562SLBP
NTRK1ENSG00000198400.7338.24160571.26380-0.756102.872501.61470K562SNRNP200
NTRK1ENSG00000198400.7356.40240204.811400.799104.149403.29100K562SRSF1
NTRK1ENSG00000198400.7408.42370243.549700.745805.254003.72070K562SRSF4
NTRK1ENSG00000198400.783.91560163.76710-0.964602.965101.63330K562SSB
NTRK1ENSG00000198400.7337.38700700.99230-1.055003.881501.56490K562SUGP2
NTRK1ENSG00000198400.7290.08800683.43470-1.236306.580304.11940K562SUPT6H
NTRK1ENSG00000198400.7245.47810508.51330-1.0507012.8967011.13220K562SYNCRIP
NTRK1ENSG00000198400.745.78770101.50080-1.148502.932101.41060K562TAF15
NTRK1ENSG00000198400.7143.70970207.27090-0.528402.170401.53860K562TARDBP
NTRK1ENSG00000198400.7363.39790199.939300.861907.307105.87370K562TIA1
NTRK1ENSG00000198400.7429.88940196.227301.131304.957003.41940K562TRA2A
NTRK1ENSG00000198400.748.41930100.08330-1.047503.400702.16110K562U2AF1
NTRK1ENSG00000198400.744.81160103.41600-1.206504.459603.44530K562U2AF2
NTRK1ENSG00000198400.7655.02320294.468501.153305.472203.99660K562UCHL5
NTRK1ENSG00000198400.7457.95470809.50440-0.8218013.7369012.28190K562UPF1
NTRK1ENSG00000198400.7304.83640686.18090-1.170609.057507.00300K562UTP3
NTRK1ENSG00000198400.7368.64260692.65860-0.9099011.785709.93040K562WDR3
NTRK1ENSG00000198400.7441.87150720.34430-0.705109.416407.95390K562WDR43
NTRK1ENSG00000198400.7782.253901059.05020-0.437104.123002.54140K562WRN
NTRK1ENSG00000198400.7318.66780582.12660-0.869303.641401.62700K562XPO5
NTRK1ENSG00000198400.7291.34760672.40960-1.206606.708903.66670K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NTRK1 is not available on ENCORE database.





11 RBPs can affect the splicing of NTRK1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENTRK1ENSG00000198400.7chr1+156843424156843751156841414156841547156844362156844418-0.101000.000240.00363excludedK562AQR
RINTRK1ENSG00000198400.7chr1+1568453111568460021568453111568454581568458711568460020.372000.000320.00698includedK562SF3B4
RINTRK1ENSG00000198400.7chr1+1568453111568460021568453111568454581568458711568460020.219000.000420.00343includedK562PUS1
RINTRK1ENSG00000198400.7chr1+1568453111568460021568453111568454581568458711568460020.186000.000270.00433includedK562AGGF1
RINTRK1ENSG00000198400.7chr1+1568453111568460021568453111568454581568458711568460020.232000.000010.00026includedK562AKAP8L
RINTRK1ENSG00000198400.7chr1+1568453111568460021568453111568454581568458711568460020.165000.003860.04233includedK562UTP18
RINTRK1ENSG00000198400.7chr1+1568453111568460021568453111568454581568458711568460020.258000.000410.00592includedK562EFTUD2
RINTRK1ENSG00000198400.7chr1+1568453111568460021568453111568454581568458711568460020.181000.000490.00356includedK562AQR
MXENTRK1ENSG00000198400.7chr1+156841414156841547156843424156843751156838296156838439156844362156844418-0.210000.011480.096542includedK562DROSHA
MXENTRK1ENSG00000198400.7chr1+1568414141568415471568434241568437511568367011568367701568443621568444180.054000.001220.010871includedK562AQR
MXENTRK1ENSG00000198400.7chr1+156841414156841547156843424156843751156838296156838439156844362156844418-0.259000.000380.065842includedK562SDAD1
MXENTRK1ENSG00000198400.7chr1+156841414156841547156843424156843751156838296156838439156844362156844418-0.240000.002120.071652includedK562SAFB
MXENTRK1ENSG00000198400.7chr1+156841414156841547156843424156843751156838296156838439156844362156844418-0.227000.007520.080322includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NTRK1 is not avaliable on ENCORE database.