NIPA2

General Information

Gene Name       : NIPA2
Gene ID             : ENSG00000140157.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NIPA2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NIPA2ENSG00000140157.1480.4062.9671.68ENCSR000AEF
HepG2NIPA2ENSG00000140157.1426.1237.8431.98ENCSR985KAT
K562NIPA2ENSG00000140157.1446.2054.9450.57ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NIPA2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NIPA2 RNA is bound by 11 proteins.  







eCLIP assay for NIPA2 is not avaliable on ENCORE database.





11 proteins are bound to NIPA2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr152300471523004792-3'-UTR,intron-Distal4.590536.21733K562PUM2
chr152300547123005557-3'-UTR,intron-Distal3.335314.00349K562FAM120A
chr152303424323034345-5'-UTR,intron-Distal3.103974.52821K562DDX3X
chr152303416723034327-5'-UTR,intron-Distal3.105633.60157HepG2GRWD1
chr152303414123034278-5'-UTR,intron-Distal4.0888710.47528HepG2GRSF1
chr152303428223034339-5'-UTR,intron-Distal4.1492918.70677HepG2DDX3X
chr152303414423034282-5'-UTR,intron-Distal4.6347149.47910HepG2DDX3X
chr152303434523034406-5'-UTR,intron-Distal,intron-Proximal5.199417.55366K562DDX3X
chr152303435623034383-5'-UTR,intron-Distal,intron-Proximal5.812795.29846HepG2DDX3X
chr152301448723014544-CDS,intron-Distal,intron-Proximal3.245664.35314HepG2U2AF2
chr152300681323006876-CDS,intron-Distal3.709314.36528HepG2U2AF2
chr152300671923006800-CDS,intron-Distal4.9329612.43595K562PUM2
chr152302113523021243-CDS,intron-Distal,intron-Proximal3.784594.00320K562AQR
chr152301195623012021-intron-Distal4.803357.58902K562KHSRP
chr152302246523022518-intron-Distal4.762054.22343HepG2XPO5
chr152301635123016439-intron-Distal3.832403.29026K562KHDRBS1
chr152302106223021159-intron-Distal,intron-Proximal4.712106.08021K562PRPF8
chr152301182723011883-intron-Distal3.831493.66668K562KHSRP
chr152301986723019955-intron-Distal,intron-Proximal3.827803.45805K562KHSRP
chr152303195423032063-intron-Distal3.827013.20552HepG2KHSRP
chr152301188323011910-intron-Distal4.290805.44709K562KHSRP
chr152300689523006975-intron-Distal3.805263.42844K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NIPA2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NIPA2 is not available on ENCORE database.

  • 84 RBPs can affect the levels of NIPA2.  








The Knockdown/knockout RNA-Seq assay for NIPA2 is not available on ENCORE database.





84 RBPs can affect the gene expression of NIPA2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NIPA2ENSG00000140157.10425.91650783.93610-0.8802010.058708.31940HepG2ADAR
NIPA2ENSG00000140157.10901.675401149.72990-0.350602.554801.97630HepG2BOP1
NIPA2ENSG00000140157.101176.72300947.665400.312202.307501.59800HepG2CALR
NIPA2ENSG00000140157.10886.694201259.55070-0.506403.320902.24490HepG2CCAR1
NIPA2ENSG00000140157.10419.375801055.53300-1.3317022.6911020.96030HepG2CPSF6
NIPA2ENSG00000140157.10624.27180782.38410-0.325703.341502.63710HepG2DNAJC2
NIPA2ENSG00000140157.10497.464201033.32590-1.0546013.7664012.51230HepG2EIF2S1
NIPA2ENSG00000140157.10477.79190638.25370-0.417703.140001.99430HepG2EIF3G
NIPA2ENSG00000140157.10647.545001111.84620-0.779906.167905.17040HepG2EIF4B
NIPA2ENSG00000140157.101157.58740864.931000.420402.313701.55080HepG2EWSR1
NIPA2ENSG00000140157.10448.47980644.13500-0.522304.288202.91100HepG2FASTKD2
NIPA2ENSG00000140157.10588.276701057.30420-0.845803.676402.49960HepG2FTO
NIPA2ENSG00000140157.10908.270701152.17830-0.343202.156701.54210HepG2FXR1
NIPA2ENSG00000140157.10398.75530796.97170-0.9990013.2407011.99870HepG2HNRNPA1
NIPA2ENSG00000140157.10715.93040886.46550-0.308201.925001.33490HepG2HNRNPC
NIPA2ENSG00000140157.10897.428701137.86410-0.342503.467202.67190HepG2HNRNPF
NIPA2ENSG00000140157.10715.815401108.79240-0.6313012.3908011.05890HepG2HNRNPL
NIPA2ENSG00000140157.10616.38130880.60610-0.514706.757005.84740HepG2HNRNPU
NIPA2ENSG00000140157.10693.06710899.51310-0.376104.664403.73350HepG2ILF2
NIPA2ENSG00000140157.101095.94810862.990600.344702.053201.35090HepG2MSI2
NIPA2ENSG00000140157.10937.090301206.98120-0.365103.713002.82720HepG2NOL12
NIPA2ENSG00000140157.10692.634601012.48780-0.547704.789103.81500HepG2NSUN2
NIPA2ENSG00000140157.10555.54830785.43350-0.499605.443404.44000HepG2PPIL4
NIPA2ENSG00000140157.10569.83260721.43330-0.340302.876402.09040HepG2PRPF4
NIPA2ENSG00000140157.10933.340301155.45190-0.308002.632802.02070HepG2QKI
NIPA2ENSG00000140157.101137.07130740.348900.618903.255602.49310HepG2RAVER1
NIPA2ENSG00000140157.101638.021501357.244000.271202.604102.09750HepG2RBM22
NIPA2ENSG00000140157.10846.414501105.87290-0.385704.410303.65520HepG2RECQL
NIPA2ENSG00000140157.10539.17020784.22940-0.540507.152706.18600HepG2SAFB2
NIPA2ENSG00000140157.101751.500901055.376900.730706.538405.47640HepG2SF3A3
NIPA2ENSG00000140157.101306.193901110.757900.233702.098301.57200HepG2SF3B4
NIPA2ENSG00000140157.10860.711801104.72710-0.360104.611903.74240HepG2SLBP
NIPA2ENSG00000140157.10745.19710914.56200-0.295503.148402.46930HepG2SMN1
NIPA2ENSG00000140157.101734.496501532.952200.178101.816801.38500HepG2SRFBP1
NIPA2ENSG00000140157.10801.758001330.95660-0.7312016.2213015.19190HepG2SSB
NIPA2ENSG00000140157.10534.07660889.73420-0.736305.818404.89390HepG2SUPV3L1
NIPA2ENSG00000140157.10842.247501042.14150-0.307202.595002.05030HepG2TAF15
NIPA2ENSG00000140157.10554.99070855.74150-0.624707.513106.76270HepG2TIAL1
NIPA2ENSG00000140157.10674.80420863.31810-0.355403.735103.10140HepG2TRIM56
NIPA2ENSG00000140157.101176.17680911.895200.367102.175801.61210HepG2U2AF1
NIPA2ENSG00000140157.10704.94870525.624600.423402.925202.14720HepG2UCHL5
NIPA2ENSG00000140157.101183.36020903.630300.389004.978804.21530HepG2UTP3
NIPA2ENSG00000140157.101104.47560814.162200.439902.365501.38590HepG2XRCC6
NIPA2ENSG00000140157.10547.89600875.84440-0.676805.475704.46650HepG2XRN2
NIPA2ENSG00000140157.101353.067001029.374400.394406.539105.79190HepG2ZNF622
NIPA2ENSG00000140157.101991.885601457.102100.450904.790603.18410K562AARS
NIPA2ENSG00000140157.102573.219303575.72540-0.474703.762402.31090K562ABCF1
NIPA2ENSG00000140157.101161.472901348.95940-0.215902.099801.59330K562AGGF1
NIPA2ENSG00000140157.101517.769801940.46460-0.354403.754602.17590K562BCCIP
NIPA2ENSG00000140157.101577.750901875.25600-0.249203.110402.09640K562BCLAF1
NIPA2ENSG00000140157.101294.972402010.43020-0.634607.738906.25040K562BOP1
NIPA2ENSG00000140157.101357.367601702.86080-0.327103.148601.53220K562CEBPZ
NIPA2ENSG00000140157.101781.779202655.62860-0.575705.665003.52550K562CKAP4
NIPA2ENSG00000140157.101006.270002137.64780-1.0870027.5792025.08730K562CPSF6
NIPA2ENSG00000140157.101051.934901422.66130-0.435505.154403.64930K562CSTF2
NIPA2ENSG00000140157.103582.046304449.51870-0.312903.696102.56380K562CELF1
NIPA2ENSG00000140157.101393.959201957.16690-0.489608.006505.92770K562DDX21
NIPA2ENSG00000140157.10897.588201210.68960-0.431703.450502.08620K562EIF2S1
NIPA2ENSG00000140157.101659.224302527.33180-0.607109.239608.04240K562EIF2S2
NIPA2ENSG00000140157.102985.477303619.00820-0.277603.469802.42090K562EIF4G2
NIPA2ENSG00000140157.101155.661901548.15030-0.421804.528502.85920K562EXOSC5
NIPA2ENSG00000140157.10979.739501413.13970-0.528406.181703.69700K562FASTKD2
NIPA2ENSG00000140157.101856.700902570.08230-0.469103.470402.51210K562FIP1L1
NIPA2ENSG00000140157.101697.311002175.03740-0.357803.056402.15350K562FMR1
NIPA2ENSG00000140157.101173.834501843.55400-0.651307.587605.99580K562FTO
NIPA2ENSG00000140157.102288.069601197.668600.9338023.3553021.71540K562FXR1
NIPA2ENSG00000140157.101508.352202078.91060-0.462907.208405.42330K562GLRX3
NIPA2ENSG00000140157.101381.578402040.91460-0.562907.287805.99940K562GPKOW
NIPA2ENSG00000140157.101198.354102030.92140-0.7611014.1706012.03870K562HNRNPA1
NIPA2ENSG00000140157.10924.758201424.09180-0.622903.979302.57920K562HNRNPF
NIPA2ENSG00000140157.102013.277201516.557000.408603.336601.96460K562HNRNPK
NIPA2ENSG00000140157.102055.121902661.03160-0.372803.865902.58940K562HNRNPL
NIPA2ENSG00000140157.101643.248902249.15760-0.452806.998805.57490K562HNRNPU
NIPA2ENSG00000140157.101131.598801742.72060-0.623005.059803.74940K562KRR1
NIPA2ENSG00000140157.101199.693401617.10200-0.430703.022801.49080K562LIN28B
NIPA2ENSG00000140157.101485.123301992.16590-0.423804.478203.34690K562METAP2
NIPA2ENSG00000140157.101646.704502185.70960-0.408507.299206.03880K562MTPAP
NIPA2ENSG00000140157.101480.477802428.48460-0.7140028.1055026.12890K562NSUN2
NIPA2ENSG00000140157.10865.272001303.33070-0.591002.533001.59720K562PABPN1
NIPA2ENSG00000140157.101519.295001969.24020-0.374202.835701.99300K562PCBP3
NIPA2ENSG00000140157.102286.172802917.33810-0.351702.666501.86490K562PPIG
NIPA2ENSG00000140157.101910.927501403.374300.445304.301103.36620K562PRPF8
NIPA2ENSG00000140157.10935.581001430.06750-0.612104.456303.26450K562PSIP1
NIPA2ENSG00000140157.102524.676401550.550200.7032013.2923011.89080K562PTBP1
NIPA2ENSG00000140157.104766.015903948.653400.271302.611301.81920K562PUF60
NIPA2ENSG00000140157.103405.721704115.19290-0.273003.414902.34670K562PUM2
NIPA2ENSG00000140157.101044.44270757.163700.464002.900901.87350K562RPS3
NIPA2ENSG00000140157.102033.477402396.34670-0.236902.711801.90490K562SF3A3
NIPA2ENSG00000140157.10676.80130926.69220-0.453402.876701.59050K562SLBP
NIPA2ENSG00000140157.101076.854501435.69380-0.414903.674502.43140K562SRSF5
NIPA2ENSG00000140157.101330.328801746.47080-0.392705.292403.65000K562SRSF7
NIPA2ENSG00000140157.101094.034601362.52250-0.316603.301201.88100K562SSB
NIPA2ENSG00000140157.10873.372601358.96800-0.637805.922904.39560K562SUPV3L1
NIPA2ENSG00000140157.102196.606701515.048200.535808.338106.90560K562SYNCRIP
NIPA2ENSG00000140157.101136.793201483.93860-0.384503.796302.81580K562TIA1
NIPA2ENSG00000140157.10821.637001375.53710-0.743405.424604.07160K562TIAL1
NIPA2ENSG00000140157.101042.464101460.85810-0.486803.247702.20450K562TRIM56
NIPA2ENSG00000140157.102094.518003007.28650-0.521804.056802.29360K562TRIP6
NIPA2ENSG00000140157.102146.899202574.97650-0.262303.906103.06500K562UPF1
NIPA2ENSG00000140157.101425.498802203.32150-0.6282010.015008.31000K562WDR3
NIPA2ENSG00000140157.102065.466301355.312200.607703.022401.35720K562XRCC6
NIPA2ENSG00000140157.102050.199303717.75290-0.858706.817105.36810K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NIPA2 is not available on ENCORE database.





14 RBPs can affect the splicing of NIPA2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENIPA2ENSG00000140157.10chr15-230298392302996623027800230279222303327723033413-0.148000.000190.00540excludedK562SRSF1
SENIPA2ENSG00000140157.10chr15-230197992301985623014437230145282302119723021429-0.254000.000000.00003excludedK562SF3B4
SENIPA2ENSG00000140157.10chr15-230278002302792223021197230214292303389323034006-0.469000.000110.00640excludedK562PRPF8
SENIPA2ENSG00000140157.10chr15-230278002302792223021402230214292303414623034378-0.159000.005850.06001excludedHepG2U2AF2
SENIPA2ENSG00000140157.10chr15-2303389323034006230332772303341323034146230344080.552000.000000.00000includedK562AQR
SENIPA2ENSG00000140157.10chr15-230144372301452823012278230124392301979923019856-0.088000.000000.00000excludedK562AQR
SENIPA2ENSG00000140157.10chr15-230278002302792223021402230214292303414623034378-0.274000.000290.03316excludedHepG2SRSF7
SENIPA2ENSG00000140157.10chr15-2302780023027922230211972302142923034120230344100.271000.000360.06926includedK562HNRNPA1
SENIPA2ENSG00000140157.10chr15-2302183423021909230211972302142923027800230279220.229000.000000.00000includedK562PUS1
SENIPA2ENSG00000140157.10chr15-2302983923029966230278002302792223033277230334130.179000.002540.08423includedHepG2MATR3
SENIPA2ENSG00000140157.10chr15-230278002302792223021402230214292303327723033413-0.229000.000350.03112excludedK562HNRNPUL1
SENIPA2ENSG00000140157.10chr15-230278002302792223021197230214292303412023034410-0.209000.000220.03958excludedK562ZC3H8
A3SSNIPA2ENSG00000140157.10chr15-2301979923020034230197992301985623021197230214290.201000.000000.00000longerK562AQR
A3SSNIPA2ENSG00000140157.10chr15-2302780023028019230278002302792223033277230334130.160000.000000.00000longerK562AQR
A3SSNIPA2ENSG00000140157.10chr15-230213412302147723021341230214292303389323034379-0.275000.010490.05507shorterK562AQR
MXENIPA2ENSG00000140157.10chr15-2301443723014528230197992301985623012278230124392302119723021429-0.183000.001400.041572includedK562UCHL5
MXENIPA2ENSG00000140157.10chr15-2301443723014528230211972302142923012278230124392302780023027922-0.218000.000140.004222includedK562PUS1
MXENIPA2ENSG00000140157.10chr15-23021197230214292302780023027945230122782301243923033277230334130.158000.000250.002721includedK562AQR
MXENIPA2ENSG00000140157.10chr15-23012278230124392301444223014528230046832300685523021197230214290.064000.000000.000061includedK562AQR
MXENIPA2ENSG00000140157.10chr15-23014437230145282301979923020034230122782301243923021197230214290.060000.000000.000011includedK562AQR
MXENIPA2ENSG00000140157.10chr15-23014437230145282301979923019917230122782301243923021197230214290.064000.000000.000001includedK562AQR
MXENIPA2ENSG00000140157.10chr15-23014437230145282301979923019901230122782301243923021197230214290.069000.000000.000001includedK562AQR
MXENIPA2ENSG00000140157.10chr15-23014437230145282301979923019899230122782301243923021197230214290.058000.000000.000011includedK562AQR
MXENIPA2ENSG00000140157.10chr15-23014437230145282301979923019891230122782301243923021197230214290.081000.000000.000001includedK562AQR
MXENIPA2ENSG00000140157.10chr15-23014437230145282301979923019881230122782301243923021197230214290.130000.000000.000001includedK562AQR
MXENIPA2ENSG00000140157.10chr15-23014437230145282302119723021429230122782301243923033277230334130.084000.002350.019041includedK562AQR
MXENIPA2ENSG00000140157.10chr15-23014437230145282302780023027945230122782301243923033277230334130.053000.000000.000031includedK562AQR
MXENIPA2ENSG00000140157.10chr15-23014437230145282302119723021429230122782301243923034146230343810.102000.000050.000681includedK562AQR
MXENIPA2ENSG00000140157.10chr15-2301227823012468230144422301452823004683230068552301979923019856-0.068000.004920.035422includedK562AQR
MXENIPA2ENSG00000140157.10chr15-2301979923019856230211972302142923012278230124392303327723033413-0.168000.005180.037022includedK562AQR
MXENIPA2ENSG00000140157.10chr15-2301979923019856230278002302792223012278230124392303327723033413-0.194000.000090.001132includedK562AQR
MXENIPA2ENSG00000140157.10chr15-2301227823012439230211972302142923006220230068552302780023027922-0.080000.000500.005002includedK562AQR
MXENIPA2ENSG00000140157.10chr15-2301227823012439230144422301452823004683230068552301979923019856-0.073000.002430.019602includedK562AQR
MXENIPA2ENSG00000140157.10chr15-2301444223014528230211972302142923004683230068552303327723033413-0.111000.016130.092822includedK562AQR
MXENIPA2ENSG00000140157.10chr15-23014437230145282302119723021429230122782301243923027800230279220.277000.000150.007911includedK562DHX30
MXENIPA2ENSG00000140157.10chr15-23012278230124392301444223014528230062202300685523021197230214290.086000.000380.012151includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NIPA2 is not avaliable on ENCORE database.