NDUFC1

General Information

Gene Name       : NDUFC1
Gene ID             : ENSG00000109390.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: NDUFC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDUFC1ENSG00000109390.117.5017.3712.44ENCSR000AEF
HepG2NDUFC1ENSG00000109390.1160.6549.2154.93ENCSR985KAT
K562NDUFC1ENSG00000109390.1186.2941.8664.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDUFC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDUFC1 RNA is bound by 10 proteins.  







eCLIP assay for NDUFC1 is not avaliable on ENCORE database.





10 proteins are bound to NDUFC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4140211178140211246-3'-UTR,intron-Distal,intron-Proximal3.088706.70818K562NOLC1
chr4140216884140216968-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.6234537.38231K562DDX3X
chr4140211139140211187-3'-UTR,intron-Distal,intron-Proximal4.8469813.73579HepG2SUB1
chr4140211133140211247-3'-UTR,intron-Distal,intron-Proximal4.8606727.34807HepG2LARP4
chr4140216883140216980-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.7443012.64203HepG2DDX3X
chr4140211154140211199-3'-UTR,intron-Distal,intron-Proximal5.4327250.25211K562IGF2BP1
chr4140211137140211240-3'-UTR,intron-Distal,intron-Proximal3.8663377.96670K562PUM2
chr4140211199140211245-3'-UTR,intron-Distal4.5881633.31192K562IGF2BP1
chr4140213682140213713-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.534228.30751HepG2LARP4
chr4140216883140216965-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.9452510.29584K562DROSHA
chr4140211187140211246-3'-UTR,intron-Distal4.5426124.54291HepG2SUB1
chr4140211132140211238-3'-UTR,intron-Distal,intron-Proximal3.100326.24245K562APOBEC3C
chr4140216195140216235-CDS,intron-Distal,intron-Proximal3.9897610.20165HepG2LARP4
chr4140216288140216300-CDS,intron-Distal3.009243.93348K562YBX3
chr4140216244140216292-CDS,intron-Distal,intron-Proximal3.046015.34396HepG2LARP4
chr4140216286140216300-CDS,intron-Distal3.4005118.16653K562DDX3X
chr4140216885140216945-CDS,intron-Distal,intron-Proximal3.482638.97074HepG2RPS3
chr4140216238140216288-CDS,intron-Distal,intron-Proximal3.036248.13949K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDUFC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDUFC1 is not available on ENCORE database.

  • 69 RBPs can affect the levels of NDUFC1.  








The Knockdown/knockout RNA-Seq assay for NDUFC1 is not available on ENCORE database.





69 RBPs can affect the gene expression of NDUFC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDUFC1ENSG00000109390.7527.39630728.33940-0.465705.305704.51690HepG2ACO1
NDUFC1ENSG00000109390.7215.64470301.53290-0.483702.279301.37350HepG2ADAR
NDUFC1ENSG00000109390.7677.86610956.57530-0.496903.359002.61510HepG2AUH
NDUFC1ENSG00000109390.7567.93520399.009900.509202.226801.54630HepG2CNOT7
NDUFC1ENSG00000109390.7548.71820696.82720-0.344702.796302.11580HepG2DKC1
NDUFC1ENSG00000109390.7398.34620303.615500.391702.388701.72950HepG2DNAJC21
NDUFC1ENSG00000109390.7687.87720915.20140-0.411902.654302.07370HepG2EIF2S1
NDUFC1ENSG00000109390.7426.07010551.64030-0.372602.542701.42570HepG2EIF2S2
NDUFC1ENSG00000109390.7283.03590392.87570-0.473102.269701.44400HepG2EIF3D
NDUFC1ENSG00000109390.7549.67290984.79510-0.841306.755405.71250HepG2EIF4B
NDUFC1ENSG00000109390.7803.454601098.39090-0.451102.956202.33820HepG2ETF1
NDUFC1ENSG00000109390.7462.93260351.212300.398402.455401.35800HepG2FAM120A
NDUFC1ENSG00000109390.7465.85410637.99150-0.453703.307002.45260HepG2FUBP3
NDUFC1ENSG00000109390.7747.97190946.64630-0.339801.919801.36090HepG2G3BP1
NDUFC1ENSG00000109390.7628.549301005.09810-0.677206.643905.25450HepG2G3BP2
NDUFC1ENSG00000109390.7567.21310695.36440-0.293902.341901.43770HepG2HDGF
NDUFC1ENSG00000109390.7481.11690338.707100.506204.377303.63010HepG2HNRNPU
NDUFC1ENSG00000109390.7617.84960962.21490-0.639105.851104.90610HepG2IGF2BP2
NDUFC1ENSG00000109390.7548.59690903.11960-0.719202.432201.51790HepG2IGF2BP3
NDUFC1ENSG00000109390.7688.34030967.88060-0.491702.967601.92280HepG2KHSRP
NDUFC1ENSG00000109390.7685.81160932.33540-0.443002.530101.73790HepG2LARP4
NDUFC1ENSG00000109390.7808.904901020.93070-0.335802.043901.47640HepG2MAGOH
NDUFC1ENSG00000109390.7719.884601026.61830-0.512103.575002.86560HepG2MATR3
NDUFC1ENSG00000109390.7594.75670935.68890-0.653705.766404.73740HepG2PABPC4
NDUFC1ENSG00000109390.7701.53070855.25300-0.285802.429001.85140HepG2PCBP1
NDUFC1ENSG00000109390.7418.02680302.097900.468502.073601.42800HepG2PPIL4
NDUFC1ENSG00000109390.7328.59730514.19530-0.646002.714401.50640HepG2PRPF6
NDUFC1ENSG00000109390.7552.58020870.25910-0.655309.242408.35960HepG2PTBP1
NDUFC1ENSG00000109390.7548.24160799.79890-0.544805.571704.63290HepG2PUM2
NDUFC1ENSG00000109390.7463.97580741.86300-0.6771010.128509.07580HepG2PUS1
NDUFC1ENSG00000109390.7628.70330402.999700.641504.230102.91510HepG2RCC2
NDUFC1ENSG00000109390.7689.63370968.50890-0.489905.802705.06470HepG2NELFE
NDUFC1ENSG00000109390.7647.56030902.04510-0.478205.600404.76150HepG2RECQL
NDUFC1ENSG00000109390.7273.88100382.32590-0.481302.802502.18400HepG2RPS19
NDUFC1ENSG00000109390.7642.17590467.212200.458802.793201.71390HepG2RPS5
NDUFC1ENSG00000109390.7271.09310385.68350-0.508602.076401.38640HepG2RRP9
NDUFC1ENSG00000109390.7464.67260301.627600.623306.172905.26940HepG2SAFB2
NDUFC1ENSG00000109390.7751.49630906.03930-0.269802.216101.67900HepG2SF3B4
NDUFC1ENSG00000109390.7724.41860945.71400-0.384604.007303.46440HepG2SRSF1
NDUFC1ENSG00000109390.7564.82210769.39320-0.445905.027204.32400HepG2SRSF9
NDUFC1ENSG00000109390.7582.34310850.05910-0.545706.410105.61760HepG2TAF15
NDUFC1ENSG00000109390.7288.66220474.12940-0.715903.130701.57200HepG2TRA2A
NDUFC1ENSG00000109390.7561.15020332.061800.756809.743208.78360HepG2TRIM56
NDUFC1ENSG00000109390.7441.73350628.18690-0.508002.821402.18710HepG2U2AF1
NDUFC1ENSG00000109390.7519.16170661.99980-0.350603.039502.41690HepG2UTP3
NDUFC1ENSG00000109390.7721.48870495.232800.542803.875603.02600HepG2XRN2
NDUFC1ENSG00000109390.71472.800501116.653500.399305.757904.98720K562AGGF1
NDUFC1ENSG00000109390.71644.904401227.064600.422704.315103.02890K562AKAP8
NDUFC1ENSG00000109390.71719.556701161.936200.565407.142606.05100K562AKAP8L
NDUFC1ENSG00000109390.71497.189801219.165300.296303.141702.16470K562ATP5C1
NDUFC1ENSG00000109390.7876.18940676.070700.374003.792102.65840K562BCLAF1
NDUFC1ENSG00000109390.71080.27710843.774100.356402.658201.40690K562CIRBP
NDUFC1ENSG00000109390.7849.98620592.843400.519706.691304.63590K562DDX27
NDUFC1ENSG00000109390.7749.09080973.62000-0.378203.772002.95430K562EIF2S2
NDUFC1ENSG00000109390.7669.18860850.99200-0.346702.271201.52520K562EIF4A3
NDUFC1ENSG00000109390.71042.62070819.796600.346802.491501.68790K562FIP1L1
NDUFC1ENSG00000109390.7625.55620466.321400.423702.836001.68020K562HNRNPF
NDUFC1ENSG00000109390.7998.23170674.288900.565903.672602.58710K562HNRNPM
NDUFC1ENSG00000109390.71595.047801233.077900.371203.963902.95400K562KIF1C
NDUFC1ENSG00000109390.7386.75620595.59360-0.622902.137701.32910K562KRR1
NDUFC1ENSG00000109390.71063.29870827.389200.361803.010002.13230K562MAGOH
NDUFC1ENSG00000109390.71034.95670825.748900.325702.622101.72540K562MATR3
NDUFC1ENSG00000109390.71074.572101294.93750-0.269103.413102.59320K562NSUN2
NDUFC1ENSG00000109390.71350.90360827.009000.707803.324402.21100K562PABPN1
NDUFC1ENSG00000109390.71351.11320930.623300.537805.488504.27000K562PPIG
NDUFC1ENSG00000109390.7764.16780533.582500.518103.995503.09410K562PRPF8
NDUFC1ENSG00000109390.71471.227401122.756100.389904.678903.92820K562RBM15
NDUFC1ENSG00000109390.7931.994701309.14520-0.490208.417306.88260K562SRPK2
NDUFC1ENSG00000109390.7987.98040788.004700.326202.458701.78540K562SRSF1
NDUFC1ENSG00000109390.7670.27990507.153900.402202.652201.62750K562SRSF4
NDUFC1ENSG00000109390.71079.55810797.572900.436703.518802.71740K562TARDBP
NDUFC1ENSG00000109390.71045.599901373.05160-0.393103.196502.42690K562UPF1
NDUFC1ENSG00000109390.7892.110001174.87380-0.397203.707102.69350K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDUFC1 is not available on ENCORE database.





7 RBPs can affect the splicing of NDUFC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENDUFC1ENSG00000109390.7chr4-1402185381402185971402168851402171141402217551402223640.331000.000210.02484includedHepG2G3BP1
SENDUFC1ENSG00000109390.7chr4-140221755140221858140216885140217114140223569140223705-0.313000.000000.00002excludedK562SRSF1
SENDUFC1ENSG00000109390.7chr4-1402217551402218581402168851402171141402235691402237050.282000.000280.01144includedK562AKAP8L
SENDUFC1ENSG00000109390.7chr4-1402185381402185971402168851402171141402217551402223640.199000.008160.07784includedHepG2U2AF2
SENDUFC1ENSG00000109390.7chr4-140221755140221858140216885140217114140223569140223705-0.304000.000050.00093excludedK562AQR
SENDUFC1ENSG00000109390.7chr4-1402185381402185971402168851402171141402217551402223640.602000.000050.00690includedHepG2HNRNPL
SENDUFC1ENSG00000109390.7chr4-1402185381402185971402168851402171141402217551402223640.387000.001050.02662includedHepG2SRSF1
SENDUFC1ENSG00000109390.7chr4-1402185381402185971402168851402171141402217551402223640.657000.000280.07219includedHepG2NOL12
A3SSNDUFC1ENSG00000109390.7chr4-1402111851402112671402111851402112461402136831402138750.066000.000000.00000longerK562AQR
MXENDUFC1ENSG00000109390.7chr4-140217485140217521140221755140221858140216885140217114140223569140223705-0.107000.013970.082762includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDUFC1 is not avaliable on ENCORE database.