LRWD1

General Information

Gene Name       : LRWD1
Gene ID             : ENSG00000161036.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: LRWD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LRWD1ENSG00000161036.123.8812.418.14ENCSR000AEF
HepG2LRWD1ENSG00000161036.1214.255.089.66ENCSR985KAT
K562LRWD1ENSG00000161036.1237.8322.3330.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LRWD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LRWD1 RNA is bound by 3 proteins.  







eCLIP assay for LRWD1 is not avaliable on ENCORE database.





3 proteins are bound to LRWD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7102106261102106370+3'-UTR,5'-UTR,CDS,intron-Proximal3.770923.08493K562DDX3X
chr7102108813102108963+3'-UTR,CDS,intron-Proximal3.140224.63145K562BUD13
chr7102105451102105604+5'-UTR,CDS3.392556.12311K562DDX3X
chr7102109511102109593+intron-Proximal4.672064.86944K562AQR
chr7102110329102110396+intron-Proximal4.721835.17615K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LRWD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LRWD1 is not available on ENCORE database.

  • 94 RBPs can affect the levels of LRWD1.  








The Knockdown/knockout RNA-Seq assay for LRWD1 is not available on ENCORE database.





94 RBPs can affect the gene expression of LRWD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LRWD1ENSG00000161036.6276.69200186.089100.572202.149201.31640HepG2ABCF1
LRWD1ENSG00000161036.6371.28520233.022900.672005.717604.90530HepG2ACO1
LRWD1ENSG00000161036.6410.02190133.695201.616709.977009.03310HepG2AKAP1
LRWD1ENSG00000161036.6218.87350128.033600.773502.593801.68850HepG2BCCIP
LRWD1ENSG00000161036.6277.85780203.013500.452701.980201.46610HepG2BOP1
LRWD1ENSG00000161036.6160.0595099.477100.686102.062701.40770HepG2CNOT7
LRWD1ENSG00000161036.6177.57040117.023000.601502.642502.01250HepG2CELF1
LRWD1ENSG00000161036.6192.3369086.144001.158706.699905.69320HepG2DDX21
LRWD1ENSG00000161036.6253.09960128.035000.983105.418904.56950HepG2DDX3X
LRWD1ENSG00000161036.6229.87850125.895400.868503.279302.44770HepG2DDX55
LRWD1ENSG00000161036.6121.10770211.64930-0.805402.766701.78780HepG2DDX59
LRWD1ENSG00000161036.6181.56130110.066800.722001.814801.30390HepG2DDX6
LRWD1ENSG00000161036.6151.0357077.912600.954905.159404.31350HepG2DNAJC2
LRWD1ENSG00000161036.6219.98240141.145100.640102.951301.74060HepG2EIF2S2
LRWD1ENSG00000161036.6281.36540117.968501.253907.596506.49340HepG2FXR1
LRWD1ENSG00000161036.6172.8566088.277500.969404.231303.38710HepG2HNRNPC
LRWD1ENSG00000161036.6189.85680110.893900.775602.623701.94210HepG2HNRNPK
LRWD1ENSG00000161036.6164.67030114.615700.522702.108501.51000HepG2HNRNPL
LRWD1ENSG00000161036.681.22880201.63950-1.311707.351406.38290HepG2HNRNPLL
LRWD1ENSG00000161036.6198.78650129.627900.616702.605501.68050HepG2HNRNPM
LRWD1ENSG00000161036.6143.1195087.694000.706602.737702.13350HepG2HNRNPU
LRWD1ENSG00000161036.6172.1598094.833100.860203.627702.23110HepG2KHDRBS1
LRWD1ENSG00000161036.6411.24040242.948300.759204.425603.36680HepG2LARP4
LRWD1ENSG00000161036.6146.0907088.388700.724802.341801.30350HepG2LARP7
LRWD1ENSG00000161036.6297.46640118.010301.3337010.102608.87200HepG2MAGOH
LRWD1ENSG00000161036.6434.25440118.651301.8717020.1303018.55690HepG2MATR3
LRWD1ENSG00000161036.6219.31420152.050200.528402.078101.37190HepG2MSI2
LRWD1ENSG00000161036.6314.99300121.430501.375109.680908.53670HepG2NCBP2
LRWD1ENSG00000161036.6233.09910124.767800.901603.958803.04600HepG2NOL12
LRWD1ENSG00000161036.6271.29440115.664401.229805.328803.78710HepG2NONO
LRWD1ENSG00000161036.686.25700178.78190-1.051504.743203.77360HepG2NSUN2
LRWD1ENSG00000161036.6195.96920134.131400.546902.470401.88930HepG2PCBP1
LRWD1ENSG00000161036.6121.5681078.216300.636102.180101.51810HepG2PPIL4
LRWD1ENSG00000161036.6217.05460136.488700.669203.515402.91460HepG2PTBP1
LRWD1ENSG00000161036.6190.86140119.102800.680202.974502.36010HepG2PUF60
LRWD1ENSG00000161036.6336.58610126.434101.4125018.7152017.45190HepG2PUM1
LRWD1ENSG00000161036.6277.08420126.341001.132902.432301.80380HepG2PUM2
LRWD1ENSG00000161036.6227.24730106.587801.092105.637404.20640HepG2RBM27
LRWD1ENSG00000161036.6327.98830151.894601.110509.993809.08400HepG2NELFE
LRWD1ENSG00000161036.6212.16100141.476800.584502.715202.10380HepG2RECQL
LRWD1ENSG00000161036.6221.4061083.960501.398804.558703.79020HepG2RPS19
LRWD1ENSG00000161036.6279.6742098.292901.5085011.302809.77870HepG2RPS2
LRWD1ENSG00000161036.6167.7964099.933700.747602.692401.90360HepG2RPS3A
LRWD1ENSG00000161036.6230.64320100.345701.200606.905105.21950HepG2RPS5
LRWD1ENSG00000161036.6133.5832078.096400.774303.142902.46520HepG2SAFB2
LRWD1ENSG00000161036.6338.14310169.007901.000406.705305.62480HepG2SF3A3
LRWD1ENSG00000161036.6253.82240142.093300.836905.353004.57610HepG2SF3B4
LRWD1ENSG00000161036.6181.7197091.075500.996506.022905.13100HepG2SMN1
LRWD1ENSG00000161036.6165.5710071.455201.212205.528904.14260HepG2SMNDC1
LRWD1ENSG00000161036.6276.50890117.598101.2334011.7282010.56490HepG2SRSF5
LRWD1ENSG00000161036.6156.2751086.946300.845803.546902.28780HepG2STIP1
LRWD1ENSG00000161036.6374.60410133.740201.4858020.2773018.84160HepG2SUCLG1
LRWD1ENSG00000161036.6396.4727085.218002.2179034.4041033.00040HepG2TIAL1
LRWD1ENSG00000161036.6170.0627085.972400.984005.758504.99860HepG2TRIM56
LRWD1ENSG00000161036.6279.37740116.360401.2635010.147408.27400HepG2TUFM
LRWD1ENSG00000161036.6270.61850123.166901.135504.202703.15930HepG2UBE2L3
LRWD1ENSG00000161036.6134.0547074.011000.856902.985502.19960HepG2UCHL5
LRWD1ENSG00000161036.6307.86570144.707201.0891010.106409.07490HepG2UTP3
LRWD1ENSG00000161036.6147.3599089.513300.719102.522201.48250HepG2XPO5
LRWD1ENSG00000161036.6175.9995076.873601.194903.528502.33090HepG2XRCC6
LRWD1ENSG00000161036.6237.10040164.843800.524302.874202.31940HepG2ZNF622
LRWD1ENSG00000161036.6512.18470380.948200.427002.535101.41190K562AARS
LRWD1ENSG00000161036.6871.60660581.527300.583707.761706.87910K562AGGF1
LRWD1ENSG00000161036.6852.89160639.001600.416402.341301.44940K562AKAP8
LRWD1ENSG00000161036.6759.82510605.103300.328402.073801.50570K562AKAP8L
LRWD1ENSG00000161036.61498.04180976.544500.617207.663105.50450K562APOBEC3C
LRWD1ENSG00000161036.6710.19720416.330900.770403.836402.69420K562BCLAF1
LRWD1ENSG00000161036.6951.18000694.964200.452704.380202.85790K562CCDC124
LRWD1ENSG00000161036.6374.16790231.833300.690502.541201.31650K562CIRBP
LRWD1ENSG00000161036.6591.08150315.849200.904002.653101.61960K562CSTF2
LRWD1ENSG00000161036.6539.73610364.911700.564604.378502.69750K562DDX27
LRWD1ENSG00000161036.61056.11690754.059800.485906.519805.57920K562DDX47
LRWD1ENSG00000161036.6554.34000378.396800.550802.258001.43390K562EFTUD2
LRWD1ENSG00000161036.6317.24980173.993500.866506.520105.31420K562EIF3G
LRWD1ENSG00000161036.6841.22030505.841600.7337010.812609.70110K562FXR1
LRWD1ENSG00000161036.628.25660101.98710-1.851707.486906.20590K562G3BP2
LRWD1ENSG00000161036.61468.838601092.931300.426403.364802.53340K562GRSF1
LRWD1ENSG00000161036.6535.54240394.972400.439102.363801.50640K562HNRNPM
LRWD1ENSG00000161036.6409.03620216.476900.917903.172802.04850K562IGF2BP2
LRWD1ENSG00000161036.6512.18080227.338701.1717015.2298013.14460K562MAGOH
LRWD1ENSG00000161036.6467.33590226.851701.042606.972805.42040K562MATR3
LRWD1ENSG00000161036.6796.35230545.124700.546704.752403.63490K562PPIG
LRWD1ENSG00000161036.6574.49210368.229100.641602.392401.69330K562PRPF8
LRWD1ENSG00000161036.6661.87080220.886501.5831030.7506028.63170K562PTBP1
LRWD1ENSG00000161036.6806.84020600.112300.427003.056602.49040K562PUS1
LRWD1ENSG00000161036.6748.02880584.705900.355302.777902.18340K562RBM15
LRWD1ENSG00000161036.6403.95440211.710900.932008.560806.96070K562RBM22
LRWD1ENSG00000161036.6396.22810206.448800.940402.703601.34590K562RBM34
LRWD1ENSG00000161036.6478.27430340.945800.488202.977001.94710K562RCC2
LRWD1ENSG00000161036.6450.19670222.813601.014604.270002.87600K562NELFE
LRWD1ENSG00000161036.6544.08570374.928500.537102.094901.38830K562RPS19
LRWD1ENSG00000161036.6346.09860221.135500.646202.631001.65700K562RPS3
LRWD1ENSG00000161036.6161.55150106.133400.606002.574401.75230K562SF3B4
LRWD1ENSG00000161036.697.20980159.77380-0.716902.952101.31670K562SND1
LRWD1ENSG00000161036.6542.60460216.561501.3250018.4507016.64860K562SRSF1
LRWD1ENSG00000161036.6322.03020213.465400.593102.882001.80210K562SRSF4
LRWD1ENSG00000161036.6384.91760204.573300.911807.793505.92550K562SRSF5
LRWD1ENSG00000161036.6465.54210629.99570-0.436402.749001.39650K562SSRP1
LRWD1ENSG00000161036.636.21860100.11950-1.466904.710602.62110K562TAF15
LRWD1ENSG00000161036.6532.15080219.133301.2799010.369508.85840K562TARDBP
LRWD1ENSG00000161036.6488.55250211.389601.2085015.2338013.19720K562TIA1
LRWD1ENSG00000161036.6442.14330207.533401.091109.457107.07120K562TRA2A
LRWD1ENSG00000161036.6769.68010917.61100-0.253602.026101.40540K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LRWD1 is not available on ENCORE database.





12 RBPs can affect the splicing of LRWD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELRWD1ENSG00000161036.6chr7+102107785102107926102106600102106717102108165102108270-0.077000.002830.07988excludedK562PRPF8
SELRWD1ENSG00000161036.6chr7+102107785102107926102106600102106717102108165102108270-0.097000.000000.00001excludedK562AQR
SELRWD1ENSG00000161036.6chr7+102109000102109101102108709102108824102109301102109509-0.074000.012640.09768excludedK562AQR
SELRWD1ENSG00000161036.6chr7+102107785102107926102106600102106717102108165102108270-0.219000.000000.00000excludedK562HNRNPC
MXELRWD1ENSG00000161036.6chr7+102107785102107926102108111102108270102106600102106717102108508102108634-0.272000.000000.000002includedK562UCHL5
MXELRWD1ENSG00000161036.6chr7+102107785102107926102108165102108270102106600102106717102108508102108634-0.288000.000000.000002includedK562UCHL5
MXELRWD1ENSG00000161036.6chr7+102107785102107926102108165102108270102106600102106717102108508102108634-0.240000.000000.000012includedK562XRN2
MXELRWD1ENSG00000161036.6chr7+102107785102107926102108165102108270102106600102106717102108508102108634-0.169000.000080.012322includedK562NONO
MXELRWD1ENSG00000161036.6chr7+102109000102109101102109301102109509102108709102108824102110020102110093-0.126000.015090.087972includedK562AQR
MXELRWD1ENSG00000161036.6chr7+102107785102107926102108165102108270102106600102106717102108508102108634-0.288000.001480.056622includedHepG2BCCIP
MXELRWD1ENSG00000161036.6chr7+102107785102107926102108165102108270102106600102106717102108508102108634-0.178000.000030.002032includedK562EFTUD2
MXELRWD1ENSG00000161036.6chr7+102107785102107926102108165102108270102106600102106717102108508102108634-0.193000.000960.031932includedK562SBDS
MXELRWD1ENSG00000161036.6chr7+102107785102107926102108165102108270102106600102106717102108508102108634-0.190000.001210.024122includedK562HNRNPC
MXELRWD1ENSG00000161036.6chr7+102107785102107926102108165102108270102106600102106717102108508102108634-0.216000.000360.010572includedK562PRPF8
MXELRWD1ENSG00000161036.6chr7+102107785102107926102108165102108270102106600102106717102108508102108634-0.280000.000000.000042includedK562SUPV3L1
MXELRWD1ENSG00000161036.6chr7+102107785102107926102108165102108270102106600102106717102108508102108634-0.169000.000380.035622includedK562SERBP1
MXELRWD1ENSG00000161036.6chr7+102107785102107926102108165102108270102106600102106717102108508102108634-0.165000.000180.042382includedK562GEMIN5

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LRWD1 is not avaliable on ENCORE database.