LCLAT1

General Information

Gene Name       : LCLAT1
Gene ID             : ENSG00000172954.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LCLAT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LCLAT1ENSG00000172954.137.537.347.44ENCSR000AEF
HepG2LCLAT1ENSG00000172954.139.4114.3611.88ENCSR985KAT
K562LCLAT1ENSG00000172954.137.448.638.04ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LCLAT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LCLAT1 RNA is bound by 20 proteins.  







eCLIP assay for LCLAT1 is not avaliable on ENCORE database.





20 proteins are bound to LCLAT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr23086386030863981+3'-UTR3.9527710.17836HepG2IGF2BP1
chr23078509430785186+3'-UTR,CDS,intron-Distal,intron-Proximal3.496765.11891HepG2GRWD1
chr23086329030863333+3'-UTR,CDS4.367224.06516HepG2SND1
chr23086317730863277+3'-UTR,CDS4.139953.54264K562SND1
chr23086667930866792+3'-UTR3.541053.37207K562FAM120A
chr23086513830865192+3'-UTR3.965543.83024HepG2IGF2BP1
chr23086303830863141+3'-UTR,CDS4.848966.43734HepG2SND1
chr23079092330790989+3'-UTR,CDS,intron-Proximal3.791043.56019HepG2GRWD1
chr23086385930863985+3'-UTR4.235266.36332HepG2UPF1
chr23086390930863972+3'-UTR3.930613.14501HepG2IGF2BP3
chr23086538930865480+3'-UTR3.857628.53392K562FAM120A
chr23086460230864700+3'-UTR4.191533.19668HepG2UPF1
chr23086367630863717+3'-UTR3.918385.81202K562PUM2
chr23086540530865501+3'-UTR5.148939.35471HepG2FAM120A
chr23086376930863859+3'-UTR4.514525.17229HepG2UPF1
chr23086379330863860+3'-UTR4.576745.86239HepG2IGF2BP1
chr23067015430670245+5'-UTR3.128735.52272HepG2DDX3X
chr23067011530670266+5'-UTR,intron-Proximal3.783904.60537HepG2NCBP2
chr23067015030670258+5'-UTR,intron-Proximal3.614456.98150K562DDX3X
chr23068007930680142+intron-Distal3.079153.11000HepG2HNRNPM
chr23084014030840216+intron-Distal3.667993.24603K562KHSRP
chr23080819030808294+intron-Distal3.258237.46148HepG2SUGP2
chr23083193630832020+intron-Distal3.996863.90026K562KHSRP
chr23080846530808584+intron-Distal3.106954.86294HepG2PTBP1
chr23080854130808642+intron-Distal4.913465.72657HepG2MATR3
chr23068913830689181+intron-Distal4.764595.41368HepG2PTBP1
chr23070771830707845+intron-Distal3.214373.51696K562KHSRP
chr23083222030832301+intron-Distal3.892643.55754HepG2U2AF2
chr23075710230757184+intron-Distal4.913164.67055K562EIF4G2
chr23084423230844335+intron-Distal3.778013.19638K562SAFB2
chr23080503230805112+intron-Distal3.608514.61945HepG2HNRNPK
chr23080861830808659+intron-Distal4.224053.79098HepG2SUGP2
chr23084542330845432+intron-Distal5.4274616.27577K562NSUN2
chr23076625830766378+intron-Distal3.920213.79098HepG2SUGP2
chr23080301130803134+intron-Distal3.851463.45805K562KHSRP
chr23070789130707952+intron-Distal3.576523.35377HepG2QKI
chr23083225030832371+intron-Distal3.961023.73609HepG2KHSRP
chr23084543230845448+intron-Distal5.4274616.27577K562NSUN2
chr23080820130808288+intron-Distal4.639244.66737HepG2MATR3
chr23083227930832412+intron-Distal4.459325.25174K562KHSRP
chr23080220230802301+intron-Distal4.651065.46313K562KHSRP
chr23077027530770355+intron-Distal3.833805.09669HepG2QKI
chr23079624830796328+intron-Distal3.321564.08528HepG2SUGP2
chr23080995530810067+intron-Distal4.222135.81617HepG2QKI
chr23082039930820544+intron-Distal4.390494.60209HepG2MATR3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LCLAT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LCLAT1 is not available on ENCORE database.

  • 83 RBPs can affect the levels of LCLAT1.  








The Knockdown/knockout RNA-Seq assay for LCLAT1 is not available on ENCORE database.





83 RBPs can affect the gene expression of LCLAT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LCLAT1ENSG00000172954.9594.580101018.70840-0.776807.173005.75300HepG2ABCF1
LCLAT1ENSG00000172954.91573.693201156.039200.444902.870402.32900HepG2AKAP1
LCLAT1ENSG00000172954.9801.430201329.90540-0.730706.284004.78950HepG2CCAR1
LCLAT1ENSG00000172954.91194.54710908.803800.394302.335101.61960HepG2CIRBP
LCLAT1ENSG00000172954.9695.94140462.916600.588102.985202.18730HepG2CNOT7
LCLAT1ENSG00000172954.9618.33830962.93770-0.639002.726302.04430HepG2CPSF6
LCLAT1ENSG00000172954.9533.13770702.98740-0.399003.402602.27380HepG2YBX3
LCLAT1ENSG00000172954.91139.19470865.667500.396003.355502.55290HepG2DAZAP1
LCLAT1ENSG00000172954.9846.26650603.240500.488304.373403.21570HepG2DDX24
LCLAT1ENSG00000172954.91541.207501107.531200.476603.217702.54940HepG2DDX3X
LCLAT1ENSG00000172954.9463.33140588.50650-0.345002.492001.84390HepG2DKC1
LCLAT1ENSG00000172954.9482.37370690.30490-0.517105.322104.37380HepG2DNAJC21
LCLAT1ENSG00000172954.9560.24730684.17440-0.288302.493301.86810HepG2DNAJC2
LCLAT1ENSG00000172954.9710.085201010.89780-0.509601.952201.41150HepG2EIF4A3
LCLAT1ENSG00000172954.9633.74750818.03410-0.368302.433701.66740HepG2EIF4G2
LCLAT1ENSG00000172954.9815.73520601.087700.440403.732502.76320HepG2EWSR1
LCLAT1ENSG00000172954.9731.01580587.268000.315802.789201.80850HepG2HDGF
LCLAT1ENSG00000172954.9577.21450775.18070-0.425403.009302.29000HepG2HNRNPC
LCLAT1ENSG00000172954.9577.29550818.18120-0.503102.360501.69410HepG2HNRNPF
LCLAT1ENSG00000172954.9626.91200788.59130-0.331003.524702.77080HepG2HNRNPL
LCLAT1ENSG00000172954.9520.53540770.05650-0.565007.313206.36450HepG2HNRNPU
LCLAT1ENSG00000172954.9571.81190805.69070-0.494701.999001.37640HepG2IGF2BP1
LCLAT1ENSG00000172954.9682.46740961.64670-0.494701.955301.37860HepG2IGF2BP2
LCLAT1ENSG00000172954.9554.14560967.09290-0.803403.406802.27860HepG2KHSRP
LCLAT1ENSG00000172954.9332.36740643.16650-0.9524011.123409.00120HepG2LARP7
LCLAT1ENSG00000172954.9409.104901025.63410-1.326007.846806.82650HepG2MATR3
LCLAT1ENSG00000172954.9915.31440762.238600.263902.179601.41990HepG2PARN
LCLAT1ENSG00000172954.9513.56650800.29330-0.640003.977602.74040HepG2PCBP2
LCLAT1ENSG00000172954.9401.95650617.12670-0.618503.924701.93140HepG2PHF6
LCLAT1ENSG00000172954.91031.80710846.231800.285902.178701.48520HepG2PRPF4
LCLAT1ENSG00000172954.9963.48960626.542700.6208010.378709.31640HepG2PUS1
LCLAT1ENSG00000172954.9336.72060772.37810-1.197809.013207.78790HepG2RAVER1
LCLAT1ENSG00000172954.9372.99770881.14570-1.2402010.281709.10850HepG2RPLP0
LCLAT1ENSG00000172954.9392.77790540.31410-0.460103.099402.45350HepG2RPS19
LCLAT1ENSG00000172954.9532.30190715.26770-0.426202.733401.93730HepG2RPS2
LCLAT1ENSG00000172954.9514.76640685.77620-0.413804.167203.40460HepG2SAFB2
LCLAT1ENSG00000172954.91275.59700944.288600.433802.273701.66160HepG2SF3A3
LCLAT1ENSG00000172954.9718.818901031.11920-0.520504.615103.72190HepG2SF3B1
LCLAT1ENSG00000172954.91300.76460953.554800.447906.344705.70000HepG2SRSF1
LCLAT1ENSG00000172954.9485.57290775.77350-0.6759010.174709.23290HepG2SRSF9
LCLAT1ENSG00000172954.9424.18260966.77930-1.1885029.9164028.63830HepG2SSB
LCLAT1ENSG00000172954.9449.62250636.82570-0.502202.469501.82620HepG2SUPV3L1
LCLAT1ENSG00000172954.91048.58220857.111300.290802.453001.92110HepG2TAF15
LCLAT1ENSG00000172954.9438.748201015.28300-1.2104019.7626018.14940HepG2TARDBP
LCLAT1ENSG00000172954.9187.19660426.87110-1.189209.839408.18770HepG2TFIP11
LCLAT1ENSG00000172954.9638.10620787.54820-0.303602.064201.33940HepG2TIA1
LCLAT1ENSG00000172954.9473.65560748.29720-0.659807.497206.74760HepG2TIAL1
LCLAT1ENSG00000172954.91187.88360880.105300.432503.546402.84010HepG2U2AF1
LCLAT1ENSG00000172954.9625.54070837.43820-0.420904.757003.88330HepG2UPF1
LCLAT1ENSG00000172954.91034.25580860.779600.264802.264801.30360HepG2UTP18
LCLAT1ENSG00000172954.91072.22680808.515800.407205.079704.30930HepG2UTP3
LCLAT1ENSG00000172954.9502.14290345.176600.540703.750402.35440K562AARS
LCLAT1ENSG00000172954.9952.490201307.13410-0.456604.132402.61280K562ABCF1
LCLAT1ENSG00000172954.9491.98170634.79630-0.367702.485901.56270K562AKAP8
LCLAT1ENSG00000172954.9418.80900601.15490-0.521404.078303.28370K562AKAP8L
LCLAT1ENSG00000172954.91369.62710733.574700.9007012.2780011.16880K562AQR
LCLAT1ENSG00000172954.9509.56960630.72960-0.307702.259801.44180K562ATP5C1
LCLAT1ENSG00000172954.9495.28800724.66040-0.549004.151203.07710K562BOP1
LCLAT1ENSG00000172954.9362.38340770.51700-1.0883017.0369015.06510K562CPSF6
LCLAT1ENSG00000172954.9422.04010591.33460-0.486604.258602.73720K562DDX21
LCLAT1ENSG00000172954.9350.55480230.155400.606902.245001.35080K562EIF3A
LCLAT1ENSG00000172954.9516.28340342.834600.590604.468203.42520K562EIF4A3
LCLAT1ENSG00000172954.9557.15520939.54220-0.753908.964207.34420K562FIP1L1
LCLAT1ENSG00000172954.9539.89680783.99240-0.538204.538903.44050K562FMR1
LCLAT1ENSG00000172954.9378.79980664.50840-0.810907.534505.94760K562FTO
LCLAT1ENSG00000172954.9633.13290356.530900.8284010.691809.58710K562FXR1
LCLAT1ENSG00000172954.9498.48110362.684300.458702.219401.59680K562G3BP2
LCLAT1ENSG00000172954.9476.61150735.65010-0.626205.909604.75180K562GPKOW
LCLAT1ENSG00000172954.9628.35440849.46580-0.435001.974701.32990K562GRSF1
LCLAT1ENSG00000172954.9264.88050377.87620-0.512602.806402.20540K562HNRNPC
LCLAT1ENSG00000172954.9596.37410772.74830-0.373802.110501.30460K562HNRNPM
LCLAT1ENSG00000172954.9371.79910498.95640-0.424403.107602.16400K562HNRNPU
LCLAT1ENSG00000172954.9348.55830461.46850-0.404802.454401.35110K562IGF2BP3
LCLAT1ENSG00000172954.9251.92250365.68350-0.537603.147301.64380K562LARP7
LCLAT1ENSG00000172954.9638.56730476.843700.421203.138902.24230K562MAGOH
LCLAT1ENSG00000172954.9322.46860475.88390-0.561504.332103.15420K562MATR3
LCLAT1ENSG00000172954.9537.79020714.74210-0.410403.415002.38690K562MBNL1
LCLAT1ENSG00000172954.9447.12330718.07830-0.683506.823905.41500K562METAP2
LCLAT1ENSG00000172954.9483.55610603.17630-0.318902.393301.64030K562MTPAP
LCLAT1ENSG00000172954.9470.17490670.23580-0.511504.300303.39220K562NSUN2
LCLAT1ENSG00000172954.9609.237101066.51070-0.8078010.385508.50630K562PPIG
LCLAT1ENSG00000172954.9565.18380402.623200.489202.996402.21580K562PRPF8
LCLAT1ENSG00000172954.9578.38570463.279800.320002.001501.42000K562PTBP1
LCLAT1ENSG00000172954.9384.26860596.28120-0.633905.105304.39650K562PUS1
LCLAT1ENSG00000172954.9696.82210481.808700.532203.757602.49040K562SAFB
LCLAT1ENSG00000172954.9519.89070699.64380-0.428402.485601.56590K562SF3B1
LCLAT1ENSG00000172954.9674.41920454.163100.570305.222004.25560K562SRSF1
LCLAT1ENSG00000172954.9309.85850428.90900-0.469102.778501.72800K562SRSF5
LCLAT1ENSG00000172954.9913.50800542.395100.7520010.496908.89400K562SYNCRIP
LCLAT1ENSG00000172954.9218.45600355.34560-0.701904.226702.17250K562TFIP11
LCLAT1ENSG00000172954.9844.839101099.28440-0.379802.716001.34890K562TRIP6
LCLAT1ENSG00000172954.9517.02300682.51230-0.400603.524902.08230K562TROVE2
LCLAT1ENSG00000172954.9392.13700710.66100-0.8578012.9064011.49350K562UPF1
LCLAT1ENSG00000172954.9770.79800632.303500.285602.381201.59160K562WDR43
LCLAT1ENSG00000172954.9536.15790826.54910-0.624403.045902.13620K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LCLAT1 is not available on ENCORE database.





1 RBPs can affect the splicing of LCLAT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELCLAT1ENSG00000172954.9chr2+3077535830775515307559813075618030785011307851580.236000.004390.04177includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LCLAT1 is not avaliable on ENCORE database.