KXD1

General Information

Gene Name       : KXD1
Gene ID             : ENSG00000105700.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KXD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KXD1ENSG00000105700.1057.72102.6280.17ENCSR000AEF
HepG2KXD1ENSG00000105700.1071.2043.6357.42ENCSR985KAT
K562KXD1ENSG00000105700.10137.87140.92139.39ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KXD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KXD1 RNA is bound by 23 proteins.  







eCLIP assay for KXD1 is not avaliable on ENCORE database.





23 proteins are bound to KXD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191867964218679686+3'-UTR3.2037620.01271K562YBX3
chr191867277318672889+3'-UTR,5'-UTR,CDS,intron-Proximal3.338964.77481HepG2BUD13
chr191867951718679600+3'-UTR,intron-Proximal4.4536312.72717K562METAP2
chr191867976218679820+3'-UTR5.389966.31573K562METAP2
chr191867986218679924+3'-UTR4.092754.28455K562PCBP1
chr191867973918679754+3'-UTR3.269707.79660K562YBX3
chr191867961818679710+3'-UTR,intron-Proximal5.053977.39978HepG2UPF1
chr191867992418680020+3'-UTR4.3389232.79602K562UPF1
chr191867930418679328+3'-UTR,CDS3.395609.62035K562YBX3
chr191867953218679591+3'-UTR,intron-Proximal3.095148.90707K562UPF1
chr191867275618672897+3'-UTR,5'-UTR,CDS,intron-Proximal4.6919831.90918K562AQR
chr191867968618679739+3'-UTR4.2457428.78582K562YBX3
chr191867951518679528+3'-UTR,intron-Proximal3.540357.86995K562YBX3
chr191867994618680009+3'-UTR3.147953.79722K562LIN28B
chr191867954818679677+3'-UTR,intron-Proximal4.521625.31599HepG2AKAP1
chr191868011018680160+3'-UTR5.154215.61461HepG2SUB1
chr191867984418679911+3'-UTR3.364005.60676K562DDX55
chr191867961718679746+3'-UTR,intron-Proximal3.3587724.36882K562UPF1
chr191867989318679928+3'-UTR4.032828.40205K562PABPC4
chr191867811818678176+3'-UTR,intron-Distal3.881165.29272K562BUD13
chr191867929318679364+3'-UTR,CDS3.126826.90288K562UPF1
chr191867988018679924+3'-UTR3.5271510.96329K562UPF1
chr191867811418678181+3'-UTR,intron-Distal3.786597.16774K562AQR
chr191868002018680096+3'-UTR4.2236819.42884K562UPF1
chr191867990118679993+3'-UTR4.446554.60160HepG2LARP4
chr191867983518680006+3'-UTR3.807005.91795HepG2UPF1
chr191867951418679596+3'-UTR,intron-Proximal4.426084.44583HepG2UPF1
chr191867961918679681+3'-UTR,intron-Proximal3.768383.79142K562AKAP1
chr191867991818679999+3'-UTR3.071406.07920K562FAM120A
chr191867952818679544+3'-UTR,intron-Proximal3.239858.26212K562YBX3
chr191867974718679836+3'-UTR3.9490217.35952K562UPF1
chr191867987418679893+3'-UTR4.539539.63547K562PABPC4
chr191867961818679712+3'-UTR,intron-Proximal3.614287.28897K562METAP2
chr191867069818670813+5'-UTR,intron-Distal,intron-Proximal5.7345240.84952K562PTBP1
chr191866875518668869+5'-UTR,intron-Distal,intron-Proximal3.701297.91460K562DDX51
chr191866874818668811+5'-UTR,intron-Proximal4.2738014.00166K562PRPF8
chr191866872218668743+5'-UTR,intron-Proximal3.3900211.26716K562AQR
chr191867075618670832+5'-UTR,intron-Distal,intron-Proximal4.3318815.47148HepG2PTBP1
chr191866875018668873+5'-UTR,intron-Distal,intron-Proximal3.6795219.21493K562BUD13
chr191867081318670865+5'-UTR,intron-Distal,intron-Proximal5.3525215.04840K562PTBP1
chr191866874918668900+5'-UTR,intron-Distal,intron-Proximal3.530444.59965HepG2PRPF4
chr191866860718668726+5'-UTR,intron-Proximal3.9670811.25896K562DDX3X
chr191866875518668897+5'-UTR,intron-Distal,intron-Proximal4.651508.20356HepG2SUPV3L1
chr191866874318668766+5'-UTR,intron-Proximal4.1968620.63639K562AQR
chr191866870218668757+5'-UTR,intron-Proximal3.521674.50321HepG2PRPF8
chr191866875218668895+5'-UTR,intron-Distal,intron-Proximal5.5641517.29805HepG2EFTUD2
chr191866932818669374+5'-UTR,intron-Distal4.796765.05386K562PTBP1
chr191866938318669424+5'-UTR,intron-Distal,intron-Proximal4.193545.63677K562PTBP1
chr191866875318668873+5'-UTR,intron-Distal,intron-Proximal3.950888.84538HepG2RBM22
chr191866953918669572+5'-UTR,intron-Distal3.600603.76275K562PTBP1
chr191866868218668722+5'-UTR4.307513.35417K562METAP2
chr191867069418670756+5'-UTR,intron-Distal4.6549112.97146HepG2PTBP1
chr191867798118678008+CDS,intron-Distal,intron-Proximal5.4471614.59371K562AQR
chr191867800818678034+CDS,intron-Distal,intron-Proximal5.3197914.99196K562AQR
chr191867581618675829+CDS3.124143.26789K562YBX3
chr191867571518675729+CDS3.085378.86662K562YBX3
chr191867572918675750+CDS3.0793511.37641K562YBX3
chr191867794318677972+CDS,intron-Distal3.429715.65632K562UPF1
chr191867579018675831+CDS3.365344.89070K562UCHL5
chr191867292118672929+CDS3.572808.99267K562YBX3
chr191867292918672952+CDS3.5122910.46880K562YBX3
chr191866876618668873+intron-Distal,intron-Proximal4.0547633.33960K562AQR
chr191866876418668873+intron-Distal,intron-Proximal3.295014.56392K562DDX52
chr191867583118675874+intron-Proximal3.973855.47926K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KXD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KXD1 is not available on ENCORE database.

  • 84 RBPs can affect the levels of KXD1.  








The Knockdown/knockout RNA-Seq assay for KXD1 is not available on ENCORE database.





84 RBPs can affect the gene expression of KXD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KXD1ENSG00000105700.6556.389301047.35680-0.9126010.451809.07800HepG2AKAP8L
KXD1ENSG00000105700.6369.95840633.70290-0.776403.870302.82380HepG2BCLAF1
KXD1ENSG00000105700.6939.379101165.93860-0.311702.475101.74240HepG2CALR
KXD1ENSG00000105700.6588.343901041.76540-0.824309.442508.08640HepG2CIRBP
KXD1ENSG00000105700.6781.130201186.94640-0.603602.018501.37060HepG2CNOT7
KXD1ENSG00000105700.61856.272401492.490700.314602.560301.49690HepG2CPSF7
KXD1ENSG00000105700.61247.511201040.392400.261802.437801.82660HepG2CELF1
KXD1ENSG00000105700.6445.54410695.30120-0.642106.367004.98650HepG2DDX24
KXD1ENSG00000105700.6892.331001269.40560-0.508504.123603.37280HepG2DDX3X
KXD1ENSG00000105700.6702.17840997.45050-0.506405.710104.80080HepG2DKC1
KXD1ENSG00000105700.6715.91390949.62160-0.407602.150801.33750HepG2EEF2
KXD1ENSG00000105700.6480.54860654.25730-0.445202.349001.33470HepG2AGO1
KXD1ENSG00000105700.6410.89310770.79230-0.907609.028307.48930HepG2EIF3D
KXD1ENSG00000105700.6852.884201128.02330-0.403402.073001.47350HepG2EIF4B
KXD1ENSG00000105700.6928.773601103.64020-0.248902.117001.36920HepG2EIF4G1
KXD1ENSG00000105700.6917.960501463.94850-0.6734013.3263012.17020HepG2ETF1
KXD1ENSG00000105700.61559.480202180.88210-0.483803.487602.77500HepG2GPKOW
KXD1ENSG00000105700.6444.49370812.41330-0.8701010.479109.34380HepG2HNRNPA1
KXD1ENSG00000105700.6696.38860903.65510-0.375902.605901.93080HepG2HNRNPC
KXD1ENSG00000105700.61467.556402081.24100-0.504003.714502.99590HepG2HNRNPLL
KXD1ENSG00000105700.6738.49500897.68100-0.281602.525301.94610HepG2HNRNPU
KXD1ENSG00000105700.61143.30390916.952200.318204.340403.44270HepG2ILF2
KXD1ENSG00000105700.6823.485801108.64160-0.429002.448701.51600HepG2KHSRP
KXD1ENSG00000105700.61266.501601823.91780-0.526203.052401.73710HepG2KRR1
KXD1ENSG00000105700.6894.841401169.46750-0.386102.578101.94360HepG2MAGOH
KXD1ENSG00000105700.61251.268602122.23480-0.762205.577804.17560HepG2MTPAP
KXD1ENSG00000105700.6836.074001203.61390-0.525704.248903.46950HepG2NCBP2
KXD1ENSG00000105700.6811.035701157.25780-0.512907.187306.38650HepG2PTBP1
KXD1ENSG00000105700.6793.657601061.94240-0.420104.844204.07100HepG2PUS1
KXD1ENSG00000105700.6899.893301253.24630-0.477805.608104.76490HepG2QKI
KXD1ENSG00000105700.61460.967401223.590900.255702.442301.94720HepG2RBM22
KXD1ENSG00000105700.6760.213101137.43650-0.581306.685105.67670HepG2RBM25
KXD1ENSG00000105700.6334.66390644.33430-0.945109.159307.25370HepG2RCC2
KXD1ENSG00000105700.6998.350801287.88080-0.367404.212203.57000HepG2NELFE
KXD1ENSG00000105700.6764.806301199.55130-0.6493011.2319010.11810HepG2RECQL
KXD1ENSG00000105700.6622.411501192.83990-0.938504.606103.57650HepG2RPS3A
KXD1ENSG00000105700.61043.46550799.427300.384204.887304.07210HepG2SAFB2
KXD1ENSG00000105700.6533.078202060.11270-1.9503023.6626021.83420HepG2SF3B1
KXD1ENSG00000105700.6645.864601204.77690-0.8995019.6758018.33170HepG2SF3B4
KXD1ENSG00000105700.61664.480002292.20240-0.461702.540301.79220HepG2SNRNP70
KXD1ENSG00000105700.62080.425901382.002300.5900014.4544013.54700HepG2SRFBP1
KXD1ENSG00000105700.6685.428101257.55800-0.8755019.6401018.62230HepG2SRSF1
KXD1ENSG00000105700.61173.979201023.117800.198301.820801.35560HepG2SRSF9
KXD1ENSG00000105700.6636.777101199.90780-0.9141022.2292021.08150HepG2SSB
KXD1ENSG00000105700.6835.785401130.43030-0.435704.929704.21550HepG2TAF15
KXD1ENSG00000105700.61425.856402028.12830-0.508302.618301.91000HepG2TARDBP
KXD1ENSG00000105700.61163.296601786.42250-0.618902.711401.65430HepG2TBRG4
KXD1ENSG00000105700.6842.380201038.61790-0.302102.309201.54380HepG2TIA1
KXD1ENSG00000105700.62536.946101337.618300.923302.786901.79280HepG2U2AF2
KXD1ENSG00000105700.61011.624001223.05870-0.273802.981702.26080HepG2UPF1
KXD1ENSG00000105700.61623.070701180.814500.458808.121907.18330HepG2UTP3
KXD1ENSG00000105700.6899.494701146.73810-0.350304.426503.60800HepG2ZC3H8
KXD1ENSG00000105700.61593.642201345.129900.244503.201102.62640HepG2ZNF622
KXD1ENSG00000105700.64915.639303582.180300.4564012.0280010.93680K562AGGF1
KXD1ENSG00000105700.64726.366503936.272100.263802.335201.44460K562AKAP8
KXD1ENSG00000105700.64412.608202941.425100.585008.720507.77460K562AQR
KXD1ENSG00000105700.62653.695002098.383700.338602.504701.51090K562CCAR1
KXD1ENSG00000105700.63435.642804192.49400-0.287203.143002.30580K562CPSF6
KXD1ENSG00000105700.64779.557304010.975200.252802.392001.58580K562DKC1
KXD1ENSG00000105700.62003.712902350.07240-0.230002.330901.66220K562EIF2S2
KXD1ENSG00000105700.61102.293601667.89410-0.597505.379903.87480K562EIF3D
KXD1ENSG00000105700.63047.642604025.20390-0.401407.190605.69040K562EIF4G2
KXD1ENSG00000105700.63995.043902909.768500.457205.317204.11520K562FIP1L1
KXD1ENSG00000105700.63353.519904265.61050-0.347102.065101.32240K562FMR1
KXD1ENSG00000105700.6450.535301076.40560-1.2565015.5420013.54550K562G3BP2
KXD1ENSG00000105700.61983.953102333.17360-0.233901.859701.35980K562HNRNPC
KXD1ENSG00000105700.62984.339002393.230600.318402.157001.33960K562HNRNPM
KXD1ENSG00000105700.62323.849702820.08940-0.279203.269802.30140K562HNRNPU
KXD1ENSG00000105700.62238.247201534.580300.544404.679003.20240K562IGF2BP2
KXD1ENSG00000105700.63189.906102366.713600.430504.063302.20660K562LIN28B
KXD1ENSG00000105700.62636.186702080.827700.341203.599701.79250K562LSM11
KXD1ENSG00000105700.64705.514103786.602100.313302.896201.79000K562MAK16
KXD1ENSG00000105700.65505.537204431.412900.313003.279602.27580K562MBNL1
KXD1ENSG00000105700.63155.489203907.21450-0.308302.069201.31100K562METAP2
KXD1ENSG00000105700.63972.021803531.120900.169602.957102.18990K562NSUN2
KXD1ENSG00000105700.61133.530201434.14850-0.339402.364601.46410K562PCBP2
KXD1ENSG00000105700.63047.646002278.026500.419804.966302.98230K562PHF6
KXD1ENSG00000105700.62604.124503327.46600-0.353602.449901.69870K562POLR2G
KXD1ENSG00000105700.64613.267703303.025000.481905.376704.17150K562PPIG
KXD1ENSG00000105700.62936.454302091.979600.489105.993004.58430K562PSIP1
KXD1ENSG00000105700.63516.605904671.51110-0.409706.494504.79960K562PUM1
KXD1ENSG00000105700.63854.530204576.98620-0.247803.263102.22090K562PUM2
KXD1ENSG00000105700.65209.481603696.583000.494802.448001.93010K562PUS1
KXD1ENSG00000105700.64935.856503601.759300.454508.597307.57830K562RBM15
KXD1ENSG00000105700.61836.380501501.401600.290502.211701.46400K562RBM22
KXD1ENSG00000105700.62133.871803806.63510-0.8350011.900809.80460K562SF3B1
KXD1ENSG00000105700.62829.375501809.542400.644809.869707.60390K562SRFBP1
KXD1ENSG00000105700.62784.360302204.881000.336503.508902.30320K562SRSF4
KXD1ENSG00000105700.61820.133201450.389400.327502.329001.37920K562SRSF5
KXD1ENSG00000105700.62159.991201553.850200.475104.790603.85010K562TARDBP
KXD1ENSG00000105700.61878.543601498.913100.325603.127602.24900K562TIA1
KXD1ENSG00000105700.62712.639602012.108200.430903.816002.71120K562TIAL1
KXD1ENSG00000105700.61840.420601471.322500.322802.322901.34040K562TRA2A
KXD1ENSG00000105700.63158.756702137.847100.563107.985406.18260K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KXD1 is not available on ENCORE database.





10 RBPs can affect the splicing of KXD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKXD1ENSG00000105700.6chr19+186712291867136018668571186687241867284518672967-0.077000.000140.00423excludedK562SRSF1
SEKXD1ENSG00000105700.6chr19+186712291867136018668571186687241867284518672967-0.104000.000000.00025excludedK562PRPF8
SEKXD1ENSG00000105700.6chr19+186778571867798818675678186758311867921118680120-0.052000.000010.00044excludedHepG2U2AF1
SEKXD1ENSG00000105700.6chr19+1867122918671360186685711866872418672845186729670.081000.000750.02124includedHepG2HNRNPK
SEKXD1ENSG00000105700.6chr19+186759431867600018675678186758311867921118680120-0.166000.001900.02424excludedHepG2U2AF2
SEKXD1ENSG00000105700.6chr19+1867827518678394186779411867798818679211186801970.074000.000000.00002includedK562HNRNPK
SEKXD1ENSG00000105700.6chr19+186712291867136018668571186687241867284518672967-0.091000.000000.00018excludedK562PTBP1
A5SSKXD1ENSG00000105700.6chr19+186685971866872418668597186686241867284518672967-0.075000.002370.03896shorterK562AQR
MXEKXD1ENSG00000105700.6chr19+18672845186729671867567818675831186686881866872418677941186781280.125000.004230.089541includedHepG2MATR3
MXEKXD1ENSG00000105700.6chr19+1867284518672967186756781867583118668697186687241867794118677988-0.087000.013050.078442includedK562AQR
MXEKXD1ENSG00000105700.6chr19+1867284518672967186756781867583118668688186687241867794118678128-0.085000.000050.026072includedK562WDR3
MXEKXD1ENSG00000105700.6chr19+1867284518672967186756781867583118668688186687241867794118678128-0.063000.000030.002212includedK562DDX55
MXEKXD1ENSG00000105700.6chr19+18672845186729671867567818675831186686881866872418677941186781280.138000.000030.001361includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KXD1 is not avaliable on ENCORE database.