KCTD7

General Information

Gene Name       : KCTD7
Gene ID             : ENSG00000243335.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KCTD7)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KCTD7ENSG00000243335.96.947.517.22ENCSR000AEF
HepG2KCTD7ENSG00000243335.97.097.837.46ENCSR985KAT
K562KCTD7ENSG00000243335.97.637.967.79ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KCTD7 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KCTD7 RNA is bound by 48 proteins.  







eCLIP assay for KCTD7 is not avaliable on ENCORE database.





48 proteins are bound to KCTD7 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr76610588766105955+3'-UTR,intron-Distal4.8079814.13271K562UPF1
chr76626049766260588+3'-UTR,CDS,intron-Proximal3.904324.51739HepG2BCLAF1
chr76624025866240374+3'-UTR,CDS3.022407.36535K562ZNF622
chr76610533966105395+3'-UTR,intron-Distal,intron-Proximal4.096414.23889K562TIA1
chr76610491566104949+3'-UTR,intron-Distal3.545376.48866K562UPF1
chr76610781166107930+3'-UTR,intron-Distal3.322594.95687K562CSTF2T
chr76627409166274258+3'-UTR,CDS3.562088.20757HepG2BCLAF1
chr76627505466275120+3'-UTR3.136673.06830K562UPF1
chr76627411466274216+3'-UTR,CDS3.140494.05316K562GRWD1
chr76610624566106277+3'-UTR,intron-Distal5.371418.80636K562UPF1
chr76627450066274568+3'-UTR3.662933.91876HepG2U2AF2
chr76627028866270356+3'-UTR,CDS3.094594.03389K562ZNF622
chr76610782666107967+3'-UTR,intron-Distal5.8605534.23608K562UPF1
chr76624021366240246+3'-UTR,CDS,intron-Proximal4.395834.16170K562UCHL5
chr76610594966106014+3'-UTR,intron-Distal3.682175.11562K562XRCC6
chr76610538266105472+3'-UTR,intron-Distal3.9092116.78492K562UPF1
chr76610635966106464+3'-UTR,intron-Distal5.7096222.55010K562UPF1
chr76627412066274219+3'-UTR,CDS3.320097.21479K562UCHL5
chr76627472466274768+3'-UTR5.3923111.85613K562PUM2
chr76610725366107293+3'-UTR,intron-Distal4.465227.12652K562UPF1
chr76627027266270337+3'-UTR,CDS3.743863.05875K562RBM15
chr76610583866105887+3'-UTR,intron-Distal5.7614323.76045K562UPF1
chr76610590866105975+3'-UTR,intron-Distal3.946833.54208HepG2SUGP2
chr76610595566105995+3'-UTR,intron-Distal4.4867613.57997K562UPF1
chr76610533466105382+3'-UTR,intron-Distal,intron-Proximal4.4922612.41920K562UPF1
chr76627421666274278+3'-UTR,CDS3.372623.07653K562ZNF622
chr76610560866105697+3'-UTR,intron-Distal4.1366722.55100K562UPF1
chr76610575866105803+3'-UTR,intron-Distal3.312216.18673K562UPF1
chr76624023766240374+3'-UTR,CDS4.686164.66217K562ZNF800
chr76610683366106936+3'-UTR,intron-Distal4.4645219.37622K562UPF1
chr76627391066274049+3'-UTR,CDS3.961886.28172K562RBM15
chr76620568766205785+5'-UTR,intron-Distal,intron-Proximal4.281364.94878HepG2GRWD1
chr76623686766236969+3'-UTR,5'-UTR,CDS,intron-Proximal3.065016.29223K562UCHL5
chr76620567466205737+5'-UTR,intron-Distal3.420156.59225HepG2CSTF2T
chr76620569066205732+5'-UTR,intron-Distal3.917833.05875K562RBM15
chr76610413366104167+CDS,intron-Distal4.367284.82934K562RBM15
chr76610391466103960+CDS,intron-Proximal4.036356.04229K562RBM15
chr76623700166237069+CDS,intron-Proximal4.726575.58500K562UCHL5
chr76610397566104013+CDS,intron-Proximal4.109064.80676K562RBM15
chr76610403066104080+CDS,intron-Distal5.2160513.84893K562RBM15
chr76610408066104127+CDS,intron-Distal4.626538.37444K562RBM15
chr76610401366104030+CDS,intron-Distal,intron-Proximal3.284143.04831K562RBM15
chr76615985166159914+intron-Distal3.161813.50009K562CSTF2T
chr76611965966119727+intron-Distal,intron-Proximal3.850973.71918HepG2XRN2
chr76617234666172382+intron-Distal3.082313.28806K562KHSRP
chr76617723466177370+intron-Distal,intron-Proximal3.363884.70224K562KHSRP
chr76614713166147173+5'-UTR,intron-Distal4.423814.57471HepG2SFPQ
chr76612007966120125+intron-Distal3.073874.98353HepG2CSTF2T
chr76613122766131324+intron-Distal4.514944.70168K562CSTF2T
chr76616575666165861+intron-Distal3.522013.61570K562SRSF1
chr76612776066127863+intron-Distal4.316053.77538K562SRSF7
chr76612192566121997+intron-Distal4.680396.58136K562KHDRBS1
chr76617925966179338+intron-Distal3.855033.71397K562KHSRP
chr76618228566182381+intron-Distal3.573485.35459K562KHSRP
chr76617481966174925+intron-Distal3.503724.26114HepG2HNRNPL
chr76616577566165864+intron-Distal3.167934.69671HepG2PPIG
chr76627281766272874+intron-Distal,intron-Proximal3.849783.25055K562U2AF2
chr76612775866127797+intron-Distal5.3301121.17818K562TARDBP
chr76623671166236789+intron-Distal,intron-Proximal4.484724.29034K562U2AF2
chr76611965366119749+intron-Distal,intron-Proximal3.670416.75693K562NONO
chr76616735666167435+intron-Distal3.264934.98641K562TARDBP
chr76618164766181714+intron-Distal3.492744.05280K562CSTF2T
chr76623291966232991+intron-Distal4.301123.62366HepG2HNRNPM
chr76618004966180119+intron-Distal5.1390111.02443K562PTBP1
chr76612788866127970+intron-Distal5.7343224.00716K562EIF4G2
chr76611954666119664+intron-Distal,intron-Proximal5.035557.26684K562SRSF1
chr76619426366194413+intron-Distal4.415747.70131HepG2PCBP2
chr76611953066119644+intron-Distal,intron-Proximal5.2696610.23711K562NONO
chr76612790866127968+intron-Distal3.646853.57062K562IGF2BP1
chr76620583966205903+intron-Distal,intron-Proximal3.174513.67992HepG2XRN2
chr76616190866161961+intron-Distal3.678595.56645HepG2CSTF2T
chr76626445066264551+intron-Distal,intron-Proximal4.132514.76003K562KHSRP
chr76623670966236789+intron-Distal,intron-Proximal4.7942723.00157HepG2U2AF2
chr76620187966201959+intron-Distal3.433163.51804HepG2HNRNPL
chr76612780166127838+intron-Distal4.635044.47773K562AATF
chr76617228766172313+intron-Distal3.443046.80241K562KHSRP
chr76613184866131944+intron-Distal5.3905310.82858HepG2CSTF2T
chr76612786866127965+intron-Distal4.113173.14726K562SRSF7
chr76611952766119676+intron-Distal,intron-Proximal3.6835912.42333HepG2SRSF1
chr76619450766194651+intron-Distal4.5441319.08588HepG2PTBP1
chr76612832866128429+intron-Distal4.7715315.67544HepG2CSTF2
chr76612010266120148+intron-Distal4.120644.08332K562NONO
chr76615984666159918+intron-Distal3.302597.81475HepG2CSTF2T
chr76612749666127580+intron-Distal3.902073.38244K562NOLC1
chr76616256866162648+intron-Distal4.941274.33458HepG2XPO5
chr76613494666135013+intron-Distal3.204833.70624HepG2HNRNPK
chr76615843066158577+intron-Distal4.203897.56829HepG2HNRNPK
chr76614730066147431+intron-Distal,intron-Proximal5.5890513.22562K562NONO
chr76614712266147224+5'-UTR,intron-Distal3.736976.99195K562NONO
chr76617222166172287+intron-Distal3.369727.21887K562KHSRP
chr76612769366127786+intron-Distal3.255913.85040HepG2IGF2BP1
chr76612779766127815+intron-Distal4.7827813.47559K562TARDBP
chr76616210066162161+intron-Distal3.420114.46248HepG2FAM120A
chr76612834566128407+intron-Distal3.418063.10946HepG2SFPQ
chr76627131466271419+intron-Distal3.799445.86177HepG2U2AF2
chr76616685666166910+intron-Distal4.260483.89294K562KHSRP
chr76612771866127790+intron-Distal3.783983.28089HepG2SRSF7
chr76619372166193835+intron-Distal5.224639.00303HepG2PCBP2
chr76612765866127744+intron-Distal3.851063.10582HepG2TIAL1
chr76611998666120061+intron-Distal5.446489.80174K562NONO
chr76619775866197819+intron-Distal3.201823.99165HepG2PTBP1
chr76616752466167539+intron-Distal3.326093.84371HepG2HNRNPC
chr76613471466134778+intron-Distal,intron-Proximal3.567285.09665HepG2HNRNPK
chr76614712366147244+5'-UTR,intron-Distal3.990985.97159K562SRSF1
chr76616272766162764+intron-Distal3.863973.38470HepG2NKRF
chr76619770666197758+intron-Distal3.792114.19039HepG2PTBP1
chr76611952666119648+intron-Distal,intron-Proximal3.6002814.38745HepG2NCBP2
chr76617366566173746+intron-Distal3.843993.37208HepG2ILF3
chr76616753966167607+intron-Distal3.376065.97391HepG2HNRNPC
chr76620583566205907+intron-Distal,intron-Proximal3.237463.00054HepG2PRPF4
chr76616037066160419+intron-Distal3.493754.45183HepG2CSTF2T
chr76614745166147514+intron-Distal3.510126.99195K562NONO
chr76612495166125067+intron-Distal3.596676.13096K562SAFB2
chr76611992366119986+intron-Distal5.079228.56957K562NONO
chr76611978066119839+intron-Distal4.044645.61877K562NONO
chr76616573066165801+intron-Distal3.867625.09028HepG2U2AF2
chr76616576366165845+intron-Distal4.096353.32766HepG2SRSF7
chr76616930366169396+intron-Distal3.867993.43813HepG2HNRNPC
chr76616695366167051+intron-Distal3.046163.17661HepG2HNRNPL
chr76610292666103048+intron-Distal4.182273.16986HepG2QKI
chr76617514166175238+intron-Distal3.954688.11145K562KHSRP
chr76615710066157172+intron-Distal3.719749.85321HepG2CSTF2
chr76615771166157774+intron-Distal4.174134.36307HepG2HNRNPK
chr76612769966127758+intron-Distal6.7802933.08759K562TARDBP
chr76620584566205934+intron-Distal,intron-Proximal4.445639.23607HepG2EFTUD2
chr76612017166120266+intron-Distal3.003548.69592K562NONO
chr76616228366162322+intron-Distal3.062853.04847HepG2CSTF2T
chr76615994566159978+intron-Distal4.305574.86859HepG2CSTF2T
chr76612497566125061+intron-Distal3.293805.11909HepG2HLTF
chr76612781566127908+intron-Distal6.2809141.49379K562TARDBP
chr76618001766180158+intron-Distal5.1688315.99351HepG2PTBP1
chr76619449666194645+intron-Distal5.073039.53330K562PTBP1
chr76616682266166856+intron-Distal3.101553.28806K562KHSRP
chr76619435266194446+intron-Distal4.122803.76275K562PTBP1
chr76627044266270511+intron-Distal,intron-Proximal4.184103.50322HepG2CDC40
chr76612789866127968+intron-Distal4.219023.98448HepG2IGF2BP1
chr76610869366108816+intron-Distal4.657255.20135HepG2QKI
chr76619772766197825+intron-Distal4.399074.22415K562PTBP1
chr76620550866205580+5'-UTR,intron-Distal4.630086.13673K562RBM15
chr76612786166127967+intron-Distal4.867304.36861HepG2SRSF7
chr76612769766127751+intron-Distal5.135046.02937K562AATF
chr76619031166190390+intron-Distal3.184514.91534HepG2HNRNPK
chr76613154966131574+intron-Distal4.075234.10339HepG2CSTF2T
chr76617579666175864+intron-Distal3.025273.33460HepG2ILF3
chr76611956966119640+intron-Distal,intron-Proximal3.406514.77136HepG2PPIG
chr76612790866127977+intron-Distal5.6518425.51407K562TARDBP
chr76619435066194458+intron-Distal3.800268.26814HepG2PTBP1
chr76622482866224908+intron-Distal3.953144.02199K562HNRNPL
chr76612779166127863+intron-Distal6.183276.69377HepG2DKC1
chr76620753066207597+intron-Distal3.465323.12625HepG2QKI
chr76612833766128399+intron-Distal5.192958.53601K562FMR1
chr76612769366127762+intron-Distal4.970725.90843HepG2DKC1
chr76618011966180170+intron-Distal5.215016.90462K562PTBP1
chr76615972466159785+intron-Distal4.386924.41148HepG2GTF2F1
chr76625926866259357+intron-Distal3.920606.39777K562PTBP1
chr76612769866127794+intron-Distal5.6938622.54839K562EIF4G2
chr76616352766163594+intron-Distal3.765495.16644HepG2FAM120A
chr76623585866236085+intron-Distal3.875226.19377K562KHSRP
chr76616702066167096+intron-Distal4.4142310.43576HepG2HNRNPK
chr76616246066162539+intron-Distal4.399085.31936HepG2HNRNPK
chr76623434066234388+intron-Distal4.325704.03915HepG2SUGP2
chr76614754466147592+intron-Distal4.307924.58989K562NONO
chr76620639166206449+intron-Distal4.447524.69805HepG2NKRF
chr76623524966235401+3'-UTR,intron-Distal,intron-Proximal3.590664.16402K562TARDBP
chr76612015566120254+intron-Distal3.742508.69267HepG2NKRF
chr76612779466127867+intron-Distal6.4496910.98400K562EIF4G2
chr76615983466159906+intron-Distal3.280924.36184HepG2PRPF4
chr76620610366206219+intron-Distal4.421664.23759K562NONO
chr76612833866128403+intron-Distal3.332797.22358HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KCTD7 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KCTD7 is not available on ENCORE database.

  • 58 RBPs can affect the levels of KCTD7.  








The Knockdown/knockout RNA-Seq assay for KCTD7 is not available on ENCORE database.





58 RBPs can affect the gene expression of KCTD7 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KCTD7ENSG00000243335.4553.22170784.27110-0.503503.649902.96930HepG2ACO1
KCTD7ENSG00000243335.4613.23450966.67320-0.656605.082204.38840HepG2AKAP1
KCTD7ENSG00000243335.4342.28380559.10490-0.707902.991002.37130HepG2BOP1
KCTD7ENSG00000243335.4495.78890722.47280-0.543202.664601.91540HepG2CNOT7
KCTD7ENSG00000243335.4553.13370725.41600-0.391202.464001.67270HepG2DDX19B
KCTD7ENSG00000243335.4522.29440750.37850-0.522803.682802.92200HepG2DKC1
KCTD7ENSG00000243335.4585.42130822.79540-0.491102.580501.91470HepG2EIF4B
KCTD7ENSG00000243335.4617.48160840.08710-0.444102.323201.61380HepG2FIP1L1
KCTD7ENSG00000243335.4658.17570839.70700-0.351402.084301.31850HepG2G3BP2
KCTD7ENSG00000243335.4612.79110471.185300.379002.333901.73600HepG2HNRNPA1
KCTD7ENSG00000243335.4888.04110667.428700.411903.019802.31820HepG2HNRNPL
KCTD7ENSG00000243335.4452.10010579.56930-0.358302.333901.45930HepG2HNRNPM
KCTD7ENSG00000243335.4551.26220857.71780-0.637804.855304.03760HepG2MATR3
KCTD7ENSG00000243335.4771.483101080.56170-0.486104.693602.62570HepG2NUP35
KCTD7ENSG00000243335.4588.54680781.82770-0.409702.487701.79950HepG2PABPC4
KCTD7ENSG00000243335.4595.76930736.15560-0.305303.057102.44080HepG2PUM1
KCTD7ENSG00000243335.4947.33820741.827100.352702.454501.86000HepG2QKI
KCTD7ENSG00000243335.41103.82940673.204700.713309.170707.99810HepG2RBM25
KCTD7ENSG00000243335.4799.662701014.47510-0.343303.905403.34050HepG2SRFBP1
KCTD7ENSG00000243335.4358.91580591.35670-0.720402.486001.54280HepG2SRSF3
KCTD7ENSG00000243335.4515.91420684.70040-0.408303.964003.23820HepG2SRSF5
KCTD7ENSG00000243335.41064.04470880.801800.272602.693302.18510HepG2SSB
KCTD7ENSG00000243335.4456.96120668.86830-0.549703.964203.31200HepG2TAF15
KCTD7ENSG00000243335.4595.16730781.29160-0.392602.826501.76950HepG2UTP18
KCTD7ENSG00000243335.42562.295602051.802900.320404.844304.12750K562AGGF1
KCTD7ENSG00000243335.42668.579602134.973200.321802.866702.20160K562AKAP8L
KCTD7ENSG00000243335.41402.284201005.477200.479802.917301.93350K562BCLAF1
KCTD7ENSG00000243335.41391.98140852.341500.707508.245006.70230K562BOP1
KCTD7ENSG00000243335.41536.573801055.112500.542207.853705.34690K562CEBPZ
KCTD7ENSG00000243335.41647.16900906.187600.8620014.5160012.68690K562CPSF6
KCTD7ENSG00000243335.41620.323101212.660900.418006.275704.42080K562DDX21
KCTD7ENSG00000243335.41542.837101266.247000.284902.359501.40120K562DDX3X
KCTD7ENSG00000243335.41501.32090922.210100.703008.816407.24750K562FMR1
KCTD7ENSG00000243335.4967.176801375.77630-0.508407.532706.60050K562FXR1
KCTD7ENSG00000243335.41424.298501161.916200.293602.863701.70210K562GLRX3
KCTD7ENSG00000243335.41359.24290865.109300.651707.932106.58130K562GPKOW
KCTD7ENSG00000243335.41821.942701504.728000.275902.346901.36250K562HNRNPA1
KCTD7ENSG00000243335.4978.14350771.512600.342302.494901.42190K562HNRNPF
KCTD7ENSG00000243335.41294.402901652.85660-0.352703.171002.03220K562HNRNPL
KCTD7ENSG00000243335.41980.345601666.358200.249002.394901.56320K562HNRNPU
KCTD7ENSG00000243335.41321.60270738.896700.838707.871906.20520K562KRR1
KCTD7ENSG00000243335.41630.644201321.010800.303702.740201.51900K562NCBP2
KCTD7ENSG00000243335.41910.494001357.298400.4931012.3452010.92490K562NSUN2
KCTD7ENSG00000243335.41240.261501476.02240-0.251101.965501.38880K562PTBP1
KCTD7ENSG00000243335.42323.500502825.39000-0.282203.810602.68070K562PUM2
KCTD7ENSG00000243335.43592.592402117.455900.7626010.830609.80400K562PUS1
KCTD7ENSG00000243335.42596.128002063.018900.331504.125603.41790K562RBM15
KCTD7ENSG00000243335.41117.084801415.16070-0.341202.715601.88320K562RBM22
KCTD7ENSG00000243335.41102.118401489.26960-0.434303.783302.48170K562NELFE
KCTD7ENSG00000243335.41344.76690985.328100.448604.004102.23830K562SDAD1
KCTD7ENSG00000243335.41773.412601339.330600.404905.844504.69340K562SF3A3
KCTD7ENSG00000243335.41230.60100823.029300.580204.875603.56040K562SF3B1
KCTD7ENSG00000243335.41758.031301372.175200.357402.281001.42250K562SRPK2
KCTD7ENSG00000243335.41086.347701447.02870-0.413604.286003.41130K562SRSF1
KCTD7ENSG00000243335.41686.910701082.072100.6405013.2100010.62000K562SRSF7
KCTD7ENSG00000243335.41229.80780745.013600.723002.802401.77990K562SUPV3L1
KCTD7ENSG00000243335.41044.22080745.092700.486803.813802.70950K562TIAL1
KCTD7ENSG00000243335.41072.61730791.508700.438402.731501.79280K562TRIM56
KCTD7ENSG00000243335.41724.216401439.173500.260603.212302.44110K562UPF1
KCTD7ENSG00000243335.41823.284201231.453300.566106.564705.18270K562WDR3
KCTD7ENSG00000243335.43222.077002226.447900.533105.787204.46530K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KCTD7 is not available on ENCORE database.





5 RBPs can affect the splicing of KCTD7 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKCTD7ENSG00000243335.4chr7+6623381766234012662057196620577966236869662370650.296000.000010.00403includedK562MATR3
SEKCTD7ENSG00000243335.4chr7+6621406466214177662057196620577966236869662370650.053000.006870.06030includedK562AQR
SEKCTD7ENSG00000243335.4chr7+662352236623545466233817662340126623686966237065-0.142000.008480.07125excludedK562AQR
SEKCTD7ENSG00000243335.4chr7+662486616624882866240213662403806626049766260579-0.084000.000140.00226excludedK562AQR
SEKCTD7ENSG00000243335.4chr7+6623381766234012662057196620577966236869662370650.368000.000000.00016includedHepG2MATR3
SEKCTD7ENSG00000243335.4chr7+6623530966235454662338176623401266236869662370650.423000.000680.08293includedK562HNRNPM
SEKCTD7ENSG00000243335.4chr7+6624866166248828662402136624038066260497662605790.100000.000100.07599includedHepG2PPIG
SEKCTD7ENSG00000243335.4chr7+6623381766234012662057196620577966236869662370650.143000.003870.07537includedK562RBM15
MXEKCTD7ENSG00000243335.4chr7+66214050662141776623381766234012662057196620577966236869662370650.161000.006240.043331includedK562AQR
MXEKCTD7ENSG00000243335.4chr7+66214064662141776623381766234012662057196620577966236869662370650.186000.002620.020871includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KCTD7 is not avaliable on ENCORE database.