IGBP1

General Information

Gene Name       : IGBP1
Gene ID             : ENSG00000089289.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: IGBP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878IGBP1ENSG00000089289.1563.2052.0657.63ENCSR000AEF
HepG2IGBP1ENSG00000089289.1536.0147.3041.66ENCSR985KAT
K562IGBP1ENSG00000089289.1539.7339.3039.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for IGBP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • IGBP1 RNA is bound by 11 proteins.  







eCLIP assay for IGBP1 is not avaliable on ENCORE database.





11 proteins are bound to IGBP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX6938581969385933+3'-UTR,CDS4.616304.74403K562PUM1
chrX6938597369386059+3'-UTR6.7184434.26611HepG2SUB1
chrX6938608069386169+3'-UTR6.2356911.07978K562PABPC4
chrX6938580769385916+3'-UTR,CDS3.884813.50564HepG2YBX3
chrX6938596769386069+3'-UTR4.356909.38189K562NOLC1
chrX6935378369353861+5'-UTR,CDS3.914943.45994HepG2NCBP2
chrX6935446169354477+CDS3.650635.32768K562YBX3
chrX6938574069385798+CDS3.630113.87469HepG2BCLAF1
chrX6938571869385819+CDS3.176093.25529K562PUM1
chrX6935396369353985+CDS4.322819.80049K562YBX3
chrX6936868469368689+CDS3.366024.70209K562YBX3
chrX6935447769354504+CDS3.388056.56666K562YBX3
chrX6935455769354586+CDS3.6888811.08616K562YBX3
chrX6935458669354641+CDS3.7392911.92769K562YBX3
chrX6938568369385733+CDS3.388995.76403K562UCHL5
chrX6935453169354557+CDS3.371378.26212K562YBX3
chrX6938575069385804+CDS4.299963.33639K562METAP2
chrX6936861969368670+CDS3.2723012.00793K562YBX3
chrX6935437269354420+CDS,intron-Proximal3.850833.30425K562LIN28B
chrX6935437269354377+CDS,intron-Proximal3.619445.73361K562YBX3
chrX6936867069368684+CDS3.187365.95282K562YBX3
chrX6935840669358675+intron-Distal3.484324.76825K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for IGBP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for IGBP1 is not available on ENCORE database.

  • 95 RBPs can affect the levels of IGBP1.  








The Knockdown/knockout RNA-Seq assay for IGBP1 is not available on ENCORE database.





95 RBPs can affect the gene expression of IGBP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
IGBP1ENSG00000089289.111277.047401003.947500.347002.731501.66570HepG2AATF
IGBP1ENSG00000089289.111274.16220991.295300.362104.906104.14020HepG2ACO1
IGBP1ENSG00000089289.111711.005002924.52530-0.773407.353406.53140HepG2AKAP1
IGBP1ENSG00000089289.111190.24020991.060000.264102.934602.25400HepG2CKAP4
IGBP1ENSG00000089289.111292.668101829.99250-0.501502.770302.00520HepG2CNOT7
IGBP1ENSG00000089289.111916.602501495.971600.357405.284304.44870HepG2CELF1
IGBP1ENSG00000089289.111112.98420916.797000.279703.209802.31620HepG2DDX19B
IGBP1ENSG00000089289.11810.759302801.67810-1.7889022.5379020.93340HepG2DDX3X
IGBP1ENSG00000089289.111585.258802406.21880-0.602004.378403.61540HepG2DDX6
IGBP1ENSG00000089289.11732.53370862.61010-0.235802.059701.48120HepG2DNAJC2
IGBP1ENSG00000089289.11681.29810955.09030-0.487403.668202.61870HepG2EEF2
IGBP1ENSG00000089289.111153.693302313.63350-1.0039010.641809.52550HepG2EIF2S1
IGBP1ENSG00000089289.11590.70340775.29950-0.392302.239301.41810HepG2EIF3D
IGBP1ENSG00000089289.111144.906202557.06780-1.1593011.6050010.32280HepG2EIF4A3
IGBP1ENSG00000089289.111492.600202489.22390-0.737906.549105.52260HepG2EIF4B
IGBP1ENSG00000089289.111853.447901586.890000.223902.735001.90230HepG2EIF4G1
IGBP1ENSG00000089289.111713.746302206.84580-0.364805.709304.89760HepG2ETF1
IGBP1ENSG00000089289.111432.743502579.27600-0.848209.071807.88400HepG2FXR1
IGBP1ENSG00000089289.111097.713302393.02400-1.1243011.9850010.64850HepG2G3BP1
IGBP1ENSG00000089289.111774.174702540.02180-0.517704.283703.16480HepG2G3BP2
IGBP1ENSG00000089289.11681.27710878.58430-0.366902.601701.97270HepG2HNRNPA1
IGBP1ENSG00000089289.11756.43480977.27860-0.369602.660801.98000HepG2HNRNPC
IGBP1ENSG00000089289.111276.121802422.29610-0.9246011.082009.76760HepG2HNRNPK
IGBP1ENSG00000089289.111136.873502432.58720-1.0974011.7432010.45630HepG2IGF2BP2
IGBP1ENSG00000089289.111223.71640991.653900.303304.043903.17490HepG2ILF2
IGBP1ENSG00000089289.111752.661802446.52270-0.481203.317702.20780HepG2KHSRP
IGBP1ENSG00000089289.11967.127401607.49360-0.733006.696705.38950HepG2LARP4
IGBP1ENSG00000089289.111077.619602580.17330-1.2596015.4576013.96610HepG2MAGOH
IGBP1ENSG00000089289.111043.923402594.72780-1.3136014.9810013.59910HepG2MATR3
IGBP1ENSG00000089289.11718.88790878.13230-0.288702.009901.31570HepG2MSI2
IGBP1ENSG00000089289.11572.914402655.94050-2.2128031.3728029.42820HepG2NCBP2
IGBP1ENSG00000089289.11380.89980802.28290-1.074707.447605.64310HepG2NONO
IGBP1ENSG00000089289.111356.902002365.71240-0.802007.309006.14640HepG2PABPC4
IGBP1ENSG00000089289.111186.65640960.921900.304302.386301.59450HepG2PARN
IGBP1ENSG00000089289.111623.579602422.45460-0.577308.386607.42350HepG2PCBP1
IGBP1ENSG00000089289.111198.396801004.771900.254102.440501.70860HepG2PRPF4
IGBP1ENSG00000089289.111330.324002464.79500-0.8897014.6656013.60000HepG2PTBP1
IGBP1ENSG00000089289.111222.617601522.43820-0.316402.407501.84580HepG2PUF60
IGBP1ENSG00000089289.111358.231801616.21390-0.250902.148701.61290HepG2PUM1
IGBP1ENSG00000089289.111221.175902669.73900-1.1284020.2224018.75650HepG2QKI
IGBP1ENSG00000089289.111437.591801167.604600.300002.653201.81100HepG2RBM15
IGBP1ENSG00000089289.112401.054101844.521800.380305.602904.93110HepG2RBM22
IGBP1ENSG00000089289.111046.368002422.84440-1.2113024.9312023.02710HepG2RBM25
IGBP1ENSG00000089289.111295.518502743.19910-1.0823021.2418020.01850HepG2NELFE
IGBP1ENSG00000089289.111688.995702554.70140-0.597008.841707.83340HepG2RECQL
IGBP1ENSG00000089289.11709.136201062.86940-0.583803.504902.44250HepG2RPS10
IGBP1ENSG00000089289.11432.52270754.42400-0.802609.740208.67360HepG2RPS19
IGBP1ENSG00000089289.11618.246901179.38270-0.9318012.6029010.99140HepG2RPS2
IGBP1ENSG00000089289.11829.183901838.05420-1.1484014.4873012.71870HepG2RPS3A
IGBP1ENSG00000089289.111510.019302566.42650-0.7652012.2612011.15600HepG2SF3B4
IGBP1ENSG00000089289.112880.086602083.331900.4671011.5001010.66740HepG2SRFBP1
IGBP1ENSG00000089289.111217.752802678.68880-1.1373022.6840021.61080HepG2SRSF1
IGBP1ENSG00000089289.111198.493101503.28000-0.326903.690202.98670HepG2SRSF5
IGBP1ENSG00000089289.111396.311702179.16580-0.642209.942509.00910HepG2SRSF9
IGBP1ENSG00000089289.111338.983101808.84710-0.433907.566306.79970HepG2SSB
IGBP1ENSG00000089289.111418.584601709.56300-0.269203.185302.52740HepG2SUCLG1
IGBP1ENSG00000089289.111785.627202407.41910-0.431105.678504.92460HepG2TAF15
IGBP1ENSG00000089289.111574.356802212.39880-0.490805.213404.08020HepG2TIA1
IGBP1ENSG00000089289.11488.17120943.26940-0.9503016.3911015.35650HepG2TIAL1
IGBP1ENSG00000089289.111037.924601487.48580-0.519203.248202.29410HepG2TUFM
IGBP1ENSG00000089289.11752.75620928.22110-0.302301.876901.34830HepG2U2AF1
IGBP1ENSG00000089289.11650.67560821.89160-0.337003.275402.52650HepG2UPF1
IGBP1ENSG00000089289.112085.897601728.187300.271303.465102.84280K562AGGF1
IGBP1ENSG00000089289.112323.107701899.003300.290702.444401.52940K562AKAP8
IGBP1ENSG00000089289.112179.459501798.254000.277302.228001.63930K562AKAP8L
IGBP1ENSG00000089289.112340.537201808.730600.371803.452002.81150K562AQR
IGBP1ENSG00000089289.111010.26380666.504600.599905.449704.21330K562BOP1
IGBP1ENSG00000089289.11799.197301332.72950-0.7378015.4811014.05440K562DDX47
IGBP1ENSG00000089289.112279.085001935.070600.236002.525501.69330K562DKC1
IGBP1ENSG00000089289.111145.31860891.998400.360502.409001.55850K562EFTUD2
IGBP1ENSG00000089289.11212.68830501.08180-1.236308.958807.11140K562EIF3A
IGBP1ENSG00000089289.11722.97440954.80160-0.401302.532801.54790K562EIF3D
IGBP1ENSG00000089289.11571.370401017.39850-0.8324014.0503012.21160K562EIF3G
IGBP1ENSG00000089289.111531.772901222.449100.325302.672101.86560K562EIF4A3
IGBP1ENSG00000089289.111743.612402071.81150-0.248802.901401.94070K562EIF4G2
IGBP1ENSG00000089289.111225.95410854.738800.520203.415002.46520K562FIP1L1
IGBP1ENSG00000089289.11858.467301271.30070-0.566508.605807.60990K562FXR1
IGBP1ENSG00000089289.11907.02710676.578900.422803.305002.43900K562GPKOW
IGBP1ENSG00000089289.111727.081301425.649400.276602.008801.35900K562GRSF1
IGBP1ENSG00000089289.11962.79700703.118600.453403.158902.15850K562HNRNPM
IGBP1ENSG00000089289.112015.193501518.534200.408105.598204.31340K562HNRNPU
IGBP1ENSG00000089289.111652.176401158.726900.511705.460104.35890K562HSPD1
IGBP1ENSG00000089289.112298.060601908.408400.267902.365101.61100K562KIF1C
IGBP1ENSG00000089289.11851.31630577.763500.559103.430802.37860K562KRR1
IGBP1ENSG00000089289.112340.186201826.807100.357203.266902.07210K562MAK16
IGBP1ENSG00000089289.111275.098001571.84100-0.301802.604501.71050K562MATR3
IGBP1ENSG00000089289.112079.092301498.510500.472303.279602.30390K562NAA15
IGBP1ENSG00000089289.111374.897701163.030900.241302.878302.11890K562NSUN2
IGBP1ENSG00000089289.111356.59040970.418400.483203.783702.80270K562PPIG
IGBP1ENSG00000089289.111101.72890868.023700.343902.094201.43750K562PRPF8
IGBP1ENSG00000089289.11919.529101530.33210-0.7349012.4149011.05820K562PTBP1
IGBP1ENSG00000089289.112683.987301783.398100.589607.760306.89760K562PUS1
IGBP1ENSG00000089289.112299.127001737.633200.403905.746504.91830K562RBM15
IGBP1ENSG00000089289.111102.446001430.39660-0.375702.838101.44280K562RBM34
IGBP1ENSG00000089289.111099.278001544.03790-0.490204.192102.81360K562NELFE
IGBP1ENSG00000089289.11455.30700883.99230-0.9572010.565408.94090K562RPS19
IGBP1ENSG00000089289.11628.408201326.25690-1.0776015.9774013.45970K562RPS3
IGBP1ENSG00000089289.11604.12610790.88680-0.388602.330301.34340K562SAFB
IGBP1ENSG00000089289.112115.419501381.222700.614902.472801.33940K562SNRNP200
IGBP1ENSG00000089289.11990.690101175.68140-0.247002.549801.64600K562SRPK2
IGBP1ENSG00000089289.111032.848401280.42350-0.310002.393301.42380K562SRSF4
IGBP1ENSG00000089289.111328.685501049.463800.340203.063101.70540K562SSB
IGBP1ENSG00000089289.111469.597501233.182800.252902.679401.97180K562UPF1
IGBP1ENSG00000089289.111316.040401055.201400.318602.211101.42910K562WDR3
IGBP1ENSG00000089289.11807.245501097.24700-0.442806.513605.26700K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for IGBP1 is not available on ENCORE database.





4 RBPs can affect the splicing of IGBP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEIGBP1ENSG00000089289.11chrX+693686106936869069366482693666786938568269386174-0.056000.000040.00070excludedK562AQR
SEIGBP1ENSG00000089289.11chrX+6938219569382314693700596937017269385682693861740.073000.000000.00040includedK562EXOSC5
SEIGBP1ENSG00000089289.11chrX+6936841869368500693664826936667869368610693686900.058000.000080.02548includedK562SAFB
MXEIGBP1ENSG00000089289.11chrX+6936648269366678693821956938231469354372693546666938568269386174-0.056000.000110.033932includedK562PUM2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for IGBP1 is not avaliable on ENCORE database.