GTF3C3

General Information

Gene Name       : GTF3C3
Gene ID             : ENSG00000119041.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: GTF3C3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GTF3C3ENSG00000119041.1024.1524.5724.36ENCSR000AEF
HepG2GTF3C3ENSG00000119041.1023.3836.0229.70ENCSR985KAT
K562GTF3C3ENSG00000119041.1023.3723.3123.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GTF3C3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GTF3C3 RNA is bound by 17 proteins.  







eCLIP assay for GTF3C3 is not avaliable on ENCORE database.





17 proteins are bound to GTF3C3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2197654638197654795-3'-UTR,CDS,intron-Distal,intron-Proximal3.804586.15582K562GRWD1
chr2197656060197656121-3'-UTR,CDS,intron-Distal,intron-Proximal4.436508.92108K562UCHL5
chr2197657781197657858-3'-UTR,CDS,intron-Distal3.860959.16086K562UCHL5
chr2197654744197654797-3'-UTR,CDS,intron-Distal,intron-Proximal3.255786.92192K562UCHL5
chr2197657678197657767-3'-UTR,CDS,intron-Distal,intron-Proximal4.4714917.32470HepG2BCLAF1
chr2197657679197657717-3'-UTR,CDS,intron-Distal,intron-Proximal3.309004.39623HepG2PPIG
chr2197656053197656144-3'-UTR,CDS,intron-Distal,intron-Proximal3.341715.65791K562ZNF622
chr2197657690197657835-3'-UTR,CDS,intron-Distal3.491444.77403HepG2SRSF1
chr2197657677197657781-3'-UTR,CDS,intron-Distal,intron-Proximal4.7664322.85738K562UCHL5
chr2197657679197657727-3'-UTR,CDS,intron-Distal,intron-Proximal5.022076.03821HepG2GRWD1
chr2197656058197656130-3'-UTR,CDS,intron-Distal,intron-Proximal3.393148.47761HepG2BCLAF1
chr2197656060197656184-3'-UTR,CDS,intron-Distal,intron-Proximal3.152346.30955HepG2GRWD1
chr2197629056197629176-3'-UTR,intron-Distal6.351517.88033K562PUM2
chr2197657727197657860-3'-UTR,CDS,intron-Distal3.6647410.44743HepG2GRWD1
chr2197657834197657876-3'-UTR,CDS,intron-Distal3.463083.31745K562ZNF622
chr2197657681197657822-3'-UTR,CDS,intron-Distal4.7017523.17584K562ZNF622
chr2197657679197657715-3'-UTR,CDS,intron-Distal,intron-Proximal3.382403.85473K562GRWD1
chr2197657687197657798-3'-UTR,CDS,intron-Distal4.780566.05328HepG2TRA2A
chr2197656134197656186-3'-UTR,CDS,intron-Distal,intron-Proximal3.726576.98424K562UCHL5
chr2197657678197657752-3'-UTR,CDS,intron-Distal,intron-Proximal3.4989610.47180K562ZNF800
chr2197662521197662598-5'-UTR,CDS,intron-Distal4.7584910.80414HepG2BCLAF1
chr2197664234197664384-5'-UTR,CDS,intron-Distal,intron-Proximal4.533956.30252K562DDX3X
chr2197662518197662626-5'-UTR,CDS,intron-Distal,intron-Proximal4.5528310.62705HepG2GRWD1
chr2197664034197664096-5'-UTR,intron-Distal,intron-Proximal5.176887.27507HepG2U2AF2
chr2197664135197664211-5'-UTR,intron-Distal3.489954.06531HepG2GRWD1
chr2197662519197662560-5'-UTR,CDS,intron-Distal,intron-Proximal3.963085.47804K562ZNF622
chr2197664119197664185-5'-UTR,intron-Distal3.660113.62357HepG2U2AF2
chr2197654630197654722-CDS,intron-Distal,intron-Proximal4.6328010.74095K562UCHL5
chr2197650202197650259-CDS,intron-Distal3.002303.84692K562UCHL5
chr2197634648197634693-CDS,intron-Distal3.221643.69775K562YBX3
chr2197636545197636607-CDS,intron-Distal3.076283.41665HepG2GRWD1
chr2197654008197654093-CDS,intron-Distal3.493946.18332HepG2GRWD1
chr2197649595197649652-CDS,intron-Distal3.851589.93259HepG2BCLAF1
chr2197650165197650196-CDS,intron-Distal,intron-Proximal3.761626.67313HepG2BCLAF1
chr2197634609197634678-CDS,intron-Distal,intron-Proximal4.800773.70131HepG2PRPF8
chr2197631333197631409-CDS,intron-Distal3.050538.13949K562YBX3
chr2197650228197650313-CDS,intron-Distal,intron-Proximal3.351885.44868K562ZNF622
chr2197631288197631333-CDS,intron-Distal,intron-Proximal4.0683818.00982K562YBX3
chr2197645286197645317-CDS,intron-Distal4.457783.45943HepG2BCLAF1
chr2197639856197639914-CDS,intron-Distal4.4741310.68105HepG2BCLAF1
chr2197654008197654089-CDS,intron-Distal3.461898.57930HepG2BCLAF1
chr2197640696197640755-CDS,intron-Distal,intron-Proximal5.311104.75655HepG2PRPF8
chr2197654625197654721-CDS,intron-Distal,intron-Proximal5.1670914.17165HepG2BCLAF1
chr2197650207197650281-CDS,intron-Distal,intron-Proximal4.3694711.87770HepG2BCLAF1
chr2197654027197654084-CDS,intron-Distal3.199224.44630K562ZNF622
chr2197640691197640742-CDS,intron-Distal,intron-Proximal4.089696.71940K562PRPF8
chr2197653933197654002-CDS,intron-Distal3.851995.79114K562LIN28B
chr2197631362197631451-CDS,intron-Distal,intron-Proximal3.227574.02686HepG2U2AF2
chr2197641194197641256-CDS,intron-Distal,intron-Proximal3.869845.73400HepG2PPIG
chr2197639864197639907-CDS,intron-Distal3.760343.34184HepG2GRWD1
chr2197654627197654728-CDS,intron-Distal,intron-Proximal3.141267.26251HepG2GRWD1
chr2197641200197641260-CDS,intron-Distal,intron-Proximal3.309687.66871HepG2BCLAF1
chr2197654652197654729-CDS,intron-Distal,intron-Proximal4.070586.94741K562ZNF622
chr2197643663197643709-CDS,intron-Distal,intron-Proximal3.305355.00751HepG2BCLAF1
chr2197631252197631321-CDS,intron-Distal,intron-Proximal3.291215.34140HepG2PRPF8
chr2197641148197641194-CDS,intron-Distal,intron-Proximal3.398693.59112HepG2PPIG
chr2197640347197640428-intron-Distal4.179073.73609HepG2KHSRP
chr2197647952197648013-intron-Distal3.686236.19545HepG2PCBP2
chr2197649009197649049-intron-Distal4.008313.16986HepG2QKI
chr2197633714197633777-intron-Distal3.455413.91876HepG2U2AF2
chr2197634786197634903-intron-Distal,intron-Proximal4.062554.14103K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GTF3C3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GTF3C3 is not available on ENCORE database.

  • 72 RBPs can affect the levels of GTF3C3.  








The Knockdown/knockout RNA-Seq assay for GTF3C3 is not available on ENCORE database.





72 RBPs can affect the gene expression of GTF3C3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GTF3C3ENSG00000119041.61369.469501714.78530-0.324402.464301.57450HepG2ABCF1
GTF3C3ENSG00000119041.61669.262901428.397300.224702.557801.96930HepG2ACO1
GTF3C3ENSG00000119041.61216.780301435.10890-0.238102.366101.65100HepG2AKAP8L
GTF3C3ENSG00000119041.61776.766702398.38540-0.432803.742502.83320HepG2ASCC1
GTF3C3ENSG00000119041.62222.342901331.802800.7386011.6914010.57480HepG2BOP1
GTF3C3ENSG00000119041.61780.118402278.61650-0.356202.767801.99520HepG2CIRBP
GTF3C3ENSG00000119041.61775.434101428.087600.314004.940304.09920HepG2CKAP4
GTF3C3ENSG00000119041.61117.796501321.06320-0.241002.746401.91550HepG2DDX19B
GTF3C3ENSG00000119041.61351.033402385.03590-0.819909.859008.77050HepG2DDX6
GTF3C3ENSG00000119041.6985.812302293.02190-1.2179022.9395021.33770HepG2EIF2S1
GTF3C3ENSG00000119041.61706.250502534.16950-0.570705.148204.27710HepG2EIF4A3
GTF3C3ENSG00000119041.62454.261302982.48670-0.281203.882803.19100HepG2ETF1
GTF3C3ENSG00000119041.61906.319102556.53560-0.423403.667402.87930HepG2FXR1
GTF3C3ENSG00000119041.62005.042402517.67350-0.328502.471601.63110HepG2G3BP2
GTF3C3ENSG00000119041.6779.39320997.88240-0.356502.483701.64020HepG2GEMIN5
GTF3C3ENSG00000119041.6789.779801386.07240-0.811509.008807.89700HepG2GPKOW
GTF3C3ENSG00000119041.61079.253801487.86620-0.463204.747003.93130HepG2HNRNPA1
GTF3C3ENSG00000119041.61268.327001654.95160-0.383903.464602.69430HepG2HNRNPC
GTF3C3ENSG00000119041.61653.049701901.93330-0.202302.697902.03200HepG2HNRNPL
GTF3C3ENSG00000119041.61652.435702410.88250-0.545005.635204.70390HepG2IGF2BP2
GTF3C3ENSG00000119041.61441.818002010.89190-0.479903.151201.81220HepG2KRR1
GTF3C3ENSG00000119041.61585.070702356.18560-0.571904.707503.61690HepG2LARP4
GTF3C3ENSG00000119041.61669.927402557.42670-0.614906.826905.81090HepG2MAGOH
GTF3C3ENSG00000119041.61793.790802571.79480-0.519804.566403.77340HepG2MATR3
GTF3C3ENSG00000119041.61677.286402632.41930-0.650307.278206.27430HepG2NCBP2
GTF3C3ENSG00000119041.61290.225901821.34170-0.497402.463501.63570HepG2PABPC1
GTF3C3ENSG00000119041.61727.627302344.54470-0.440503.721702.89250HepG2PABPC4
GTF3C3ENSG00000119041.61789.715702433.40140-0.443208.649407.67400HepG2PCBP1
GTF3C3ENSG00000119041.61213.469401466.33150-0.273102.673901.94770HepG2PPIL4
GTF3C3ENSG00000119041.61524.755702476.10440-0.6995019.6225018.41410HepG2PTBP1
GTF3C3ENSG00000119041.61244.819201976.23220-0.6668010.436109.37780HepG2PUF60
GTF3C3ENSG00000119041.63348.023502492.800800.425407.550106.79270HepG2RBM22
GTF3C3ENSG00000119041.61858.394402755.64370-0.5683013.7031012.66890HepG2NELFE
GTF3C3ENSG00000119041.61890.714602566.54900-0.440908.685307.68540HepG2RECQL
GTF3C3ENSG00000119041.6907.069901090.48620-0.265701.811701.30370HepG2RPS19
GTF3C3ENSG00000119041.61269.368501633.10840-0.363502.560801.78920HepG2RPS2
GTF3C3ENSG00000119041.61548.239702000.58970-0.369802.078201.38460HepG2RPS3A
GTF3C3ENSG00000119041.61199.856601464.07970-0.287103.650102.92860HepG2SAFB2
GTF3C3ENSG00000119041.62240.907502577.89510-0.202102.254201.71400HepG2SF3B4
GTF3C3ENSG00000119041.61401.710101707.38860-0.284604.316203.54440HepG2SMN1
GTF3C3ENSG00000119041.63865.565402815.515800.4572012.3703011.51260HepG2SRFBP1
GTF3C3ENSG00000119041.62215.446102690.78440-0.280404.221803.66790HepG2SRSF1
GTF3C3ENSG00000119041.61735.279102189.11380-0.335205.492804.76100HepG2SRSF9
GTF3C3ENSG00000119041.61614.923602444.51510-0.5981015.6542014.63850HepG2SSB
GTF3C3ENSG00000119041.6990.487301289.11420-0.380202.959402.21270HepG2TARDBP
GTF3C3ENSG00000119041.6931.924601597.55650-0.7776014.9331013.93610HepG2TIAL1
GTF3C3ENSG00000119041.61178.454201611.73900-0.451707.800206.93180HepG2TRIM56
GTF3C3ENSG00000119041.61600.609401930.59460-0.270402.392801.58430HepG2TUFM
GTF3C3ENSG00000119041.61249.425201502.80850-0.266403.126602.39300HepG2UPF1
GTF3C3ENSG00000119041.6844.017701189.24370-0.494702.317901.40480HepG2UPF2
GTF3C3ENSG00000119041.61202.826601450.89710-0.270502.982602.36510HepG2UTP3
GTF3C3ENSG00000119041.6872.488901278.17280-0.550904.162803.28090HepG2XRN2
GTF3C3ENSG00000119041.62491.093402030.988600.294502.535201.90900K562AKAP8L
GTF3C3ENSG00000119041.62304.983602948.33980-0.355103.562002.91280K562AQR
GTF3C3ENSG00000119041.61429.190501701.46050-0.251602.798101.83260K562BCLAF1
GTF3C3ENSG00000119041.6556.29970788.95550-0.504103.968002.65760K562CCAR1
GTF3C3ENSG00000119041.62176.977402568.14350-0.238402.769301.66460K562CPEB4
GTF3C3ENSG00000119041.62173.238602657.32210-0.290104.038203.27110K562DDX47
GTF3C3ENSG00000119041.62633.739102185.481800.269103.326202.35530K562DKC1
GTF3C3ENSG00000119041.61301.034301644.61840-0.338104.073102.58730K562EIF2S1
GTF3C3ENSG00000119041.61402.532101821.56660-0.377105.129804.19330K562EIF2S2
GTF3C3ENSG00000119041.6934.287201465.47350-0.649405.785904.21440K562EIF3D
GTF3C3ENSG00000119041.61275.346301522.15340-0.255202.343901.60820K562EIF3G
GTF3C3ENSG00000119041.62781.376003528.35940-0.343205.585004.27160K562EIF4G2
GTF3C3ENSG00000119041.62408.527901830.941400.395502.461801.80110K562G3BP2
GTF3C3ENSG00000119041.61870.751602427.41140-0.375804.149503.22700K562GRSF1
GTF3C3ENSG00000119041.61688.589202129.88970-0.335002.990801.73820K562IGF2BP3
GTF3C3ENSG00000119041.61831.788702201.00600-0.264902.195701.44180K562MAGOH
GTF3C3ENSG00000119041.61453.405001836.25130-0.337304.935903.88000K562MTPAP
GTF3C3ENSG00000119041.62450.207901692.441400.533704.163303.02020K562NAA15
GTF3C3ENSG00000119041.6922.055101356.57080-0.557004.088902.96030K562PSIP1
GTF3C3ENSG00000119041.61607.578102138.37840-0.411604.929404.06670K562PTBP1
GTF3C3ENSG00000119041.63120.305603849.68100-0.303102.821101.99690K562PUF60
GTF3C3ENSG00000119041.63142.484704012.02690-0.352405.824304.41600K562PUM2
GTF3C3ENSG00000119041.62940.677602014.175100.545906.439605.65060K562PUS1
GTF3C3ENSG00000119041.62499.141401962.517100.348604.625103.87850K562RBM15
GTF3C3ENSG00000119041.6881.752601173.09330-0.411903.414402.24620K562SRFBP1
GTF3C3ENSG00000119041.61726.700602096.26870-0.279802.484901.80840K562SRSF1
GTF3C3ENSG00000119041.61601.289401979.63150-0.306002.443001.46380K562SRSF5
GTF3C3ENSG00000119041.61482.089702121.67940-0.517605.567104.54490K562TARDBP
GTF3C3ENSG00000119041.61430.667402046.56820-0.516507.151105.73630K562TIA1
GTF3C3ENSG00000119041.61020.239001304.82420-0.354902.324501.47200K562TIAL1
GTF3C3ENSG00000119041.61709.695702163.26960-0.339505.287404.32900K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GTF3C3 is not available on ENCORE database.





2 RBPs can affect the splicing of GTF3C3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGTF3C3ENSG00000119041.6chr2-197639839197640002197637639197637877197640733197640835-0.080000.002570.02698excludedK562AQR
A3SSGTF3C3ENSG00000119041.6chr2-1976407331976408801976407331976408351976411501976413420.053000.000100.00090longerK562AQR
A3SSGTF3C3ENSG00000119041.6chr2-1976547561976548261976547561976547941976560601976562280.081000.000000.00000longerK562AQR
A5SSGTF3C3ENSG00000119041.6chr2-1976494911976496531976495801976496531976452821976453860.125000.000000.00000longerK562AQR
A5SSGTF3C3ENSG00000119041.6chr2-1976494911976496531976495801976496531976452821976453860.053000.000590.07799longerHepG2TIAL1
MXEGTF3C3ENSG00000119041.6chr2-197640733197640835197641150197641353197637639197637877197643619197643791-0.065000.000480.004792includedK562AQR
MXEGTF3C3ENSG00000119041.6chr2-197640733197640880197641150197641353197637639197637877197643619197643791-0.056000.001100.009962includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GTF3C3 is not avaliable on ENCORE database.