GPR35

General Information

Gene Name : GPR35
Gene ID : ENSG00000178623.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GPR35)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GPR35	ENSG00000178623.11	0.00	0.12	0.06	ENCSR000AEF
HepG2	GPR35	ENSG00000178623.11	21.95	8.45	15.20	ENCSR985KAT
K562	GPR35	ENSG00000178623.11	0.06	0.02	0.04	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GPR35 is not avaliable on ENCORE database.

Proteins bound to RNA

GPR35 RNA is bound by 45 proteins.

CanvasJS.com

eCLIP assay for GPR35 is not avaliable on ENCORE database.

45 proteins are bound to GPR35 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	241553528	241553577	+	intron-Distal	9.06602	219.24894	HepG2	QKI
chr2	241553270	241553316	+	intron-Distal	8.51624	217.65174	HepG2	QKI
chr2	241553577	241553619	+	intron-Distal	9.82440	203.20396	HepG2	QKI
chr2	241553456	241553484	+	intron-Distal	8.14195	186.95559	HepG2	QKI
chr2	241553068	241553139	+	intron-Distal	7.98821	178.79580	HepG2	QKI
chr2	241553446	241553456	+	intron-Distal	8.53929	166.06623	HepG2	QKI
chr2	241553317	241553337	+	intron-Distal	8.13026	165.65780	HepG2	QKI
chr2	241553139	241553194	+	intron-Distal	8.36057	157.18967	HepG2	QKI
chr2	241553246	241553269	+	intron-Distal	8.50609	151.20559	HepG2	QKI
chr2	241553413	241553440	+	intron-Distal	9.34272	148.53347	HepG2	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 256 entries

eCLIP assay for GPR35 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GPR35 is not available on ENCORE database.
75 RBPs can affect the levels of GPR35.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GPR35 is not available on ENCORE database.

75 RBPs can affect the gene expression of GPR35 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GPR35	ENSG00000178623.7	583.17720	1718.49070	-1.55910	66.07740	64.46460	HepG2	SRSF1
GPR35	ENSG00000178623.7	732.49060	1759.92250	-1.26460	44.14310	42.56850	HepG2	NELFE
GPR35	ENSG00000178623.7	791.64170	1544.73640	-0.96440	23.44010	22.02990	HepG2	TAF15
GPR35	ENSG00000178623.7	922.37110	1639.19550	-0.82960	21.03900	19.61060	HepG2	RECQL
GPR35	ENSG00000178623.7	681.76660	1560.71970	-1.19490	18.06580	16.44290	HepG2	EIF4A3
GPR35	ENSG00000178623.7	850.44210	1785.63080	-1.07010	14.57570	13.45330	HepG2	AKAP1
GPR35	ENSG00000178623.7	973.24100	1581.41170	-0.70030	14.45670	13.39780	HepG2	PTBP1
GPR35	ENSG00000178623.7	809.54750	1575.71560	-0.96080	13.60140	12.19320	HepG2	MAGOH
GPR35	ENSG00000178623.7	870.73930	562.00400	0.63160	9.84010	8.87630	HepG2	TRIM56
GPR35	ENSG00000178623.7	1090.06560	1712.61340	-0.65180	9.54430	8.48440	HepG2	QKI
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 77 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GPR35 is not available on ENCORE database.

18 RBPs can affect the splicing of GPR35 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GPR35	ENSG00000178623.7	chr2	+	241557858	241557913	241556620	241556810	241558304	241558448	0.22000	0.00000	0.00003	included	HepG2	NKRF
SE	GPR35	ENSG00000178623.7	chr2	+	241557858	241557913	241556620	241556810	241558304	241558448	-0.28800	0.00000	0.00006	excluded	HepG2	DDX59
SE	GPR35	ENSG00000178623.7	chr2	+	241557858	241557913	241556620	241556810	241558304	241558448	0.44400	0.00000	0.00000	included	HepG2	HNRNPA1
SE	GPR35	ENSG00000178623.7	chr2	+	241557858	241557913	241556620	241556810	241558304	241558448	0.23100	0.00000	0.00001	included	HepG2	MATR3
SE	GPR35	ENSG00000178623.7	chr2	+	241557858	241557913	241556620	241556810	241558304	241558448	-0.13700	0.00000	0.00051	excluded	HepG2	DDX6
SE	GPR35	ENSG00000178623.7	chr2	+	241557858	241557913	241556506	241556810	241558304	241558448	0.35400	0.00000	0.00000	included	HepG2	IGF2BP3
SE	GPR35	ENSG00000178623.7	chr2	+	241557858	241557913	241556506	241556810	241558304	241558448	0.15900	0.00000	0.00284	included	HepG2	GRSF1
SE	GPR35	ENSG00000178623.7	chr2	+	241557858	241557913	241556620	241556810	241558304	241558448	0.19500	0.00000	0.00066	included	HepG2	KHSRP
SE	GPR35	ENSG00000178623.7	chr2	+	241557858	241557913	241556506	241556810	241558304	241558448	-0.38300	0.00001	0.00015	excluded	HepG2	U2AF2
SE	GPR35	ENSG00000178623.7	chr2	+	241567076	241567257	241558304	241558448	241569365	241570587	0.07100	0.00001	0.00106	included	HepG2	HNRNPC

Showing 1 to 10 of 20 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GPR35

General Information

Functions

Localization

Domains (AlphaFold: GPR35)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GPR35 is not avaliable on ENCORE database.

45 proteins are bound to GPR35 RNA:

eCLIP assay for GPR35 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GPR35 is not available on ENCORE database.

75 RBPs can affect the gene expression of GPR35 :

The Knockdown/knockout RNA-Seq assay for GPR35 is not available on ENCORE database.

18 RBPs can affect the splicing of GPR35 :

The Knockdown/knockout RNA-Seq assay for GPR35 is not avaliable on ENCORE database.