GPATCH8

General Information

Gene Name       : GPATCH8
Gene ID             : ENSG00000186566.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GPATCH8)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GPATCH8ENSG00000186566.1219.8022.9121.36ENCSR000AEF
HepG2GPATCH8ENSG00000186566.1217.5721.4619.52ENCSR985KAT
K562GPATCH8ENSG00000186566.1216.0516.7116.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GPATCH8 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GPATCH8 RNA is bound by 40 proteins.  







eCLIP assay for GPATCH8 is not avaliable on ENCORE database.





40 proteins are bound to GPATCH8 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174247499442475076-3'-UTR,CDS,intron-Distal3.779753.55864HepG2IGF2BP3
chr174250178342501856-3'-UTR,CDS,intron-Distal3.252986.36421K562ZNF622
chr174247657242476640-3'-UTR,CDS,intron-Distal3.314704.06531HepG2GRWD1
chr174247515042475176-3'-UTR,CDS,intron-Distal3.9901412.30329HepG2PCBP2
chr174248331842483366-3'-UTR,CDS,intron-Distal3.676665.15500HepG2BCLAF1
chr174248328742483334-3'-UTR,CDS,intron-Distal,intron-Proximal3.163693.19733K562ZNF622
chr174247513542475230-3'-UTR,CDS,intron-Distal3.743227.83741HepG2DDX59
chr174247588742475934-3'-UTR,CDS,intron-Distal3.241505.39683HepG2HLTF
chr174255108242551151-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.569465.55825HepG2U2AF2
chr174247624842476288-3'-UTR,CDS,intron-Distal3.919383.39686HepG2G3BP1
chr174248328942483343-3'-UTR,CDS,intron-Distal4.475664.69071HepG2GRWD1
chr174247608142476150-3'-UTR,CDS,intron-Distal5.453028.43384K562UCHL5
chr174247545842475568-3'-UTR,CDS,intron-Distal3.265336.05977K562UCHL5
chr174247713442477304-3'-UTR,CDS,intron-Distal3.501898.05461K562PUM1
chr174247527442475353-3'-UTR,CDS,intron-Distal3.895603.66655K562YBX3
chr174250178742501863-3'-UTR,CDS,intron-Distal,intron-Proximal4.141604.26679K562GRWD1
chr174247876542478819-3'-UTR,CDS,intron-Distal,intron-Proximal3.412983.60157HepG2GRWD1
chr174247500542475098-3'-UTR,CDS,intron-Distal4.0463917.93994HepG2PCBP2
chr174247763142477704-3'-UTR,CDS,intron-Distal3.351887.28841K562ZNF622
chr174247607842476167-3'-UTR,CDS,intron-Distal3.385595.79905HepG2BCLAF1
chr174247827242478351-3'-UTR,CDS,intron-Distal3.561454.51027K562BUD13
chr174247800442478049-3'-UTR,CDS,intron-Distal4.856376.46917K562ZNF622
chr174251604042516099-3'-UTR,intron-Distal,intron-Proximal4.800993.77802HepG2U2AF2
chr174255097342551060-3'-UTR,intron-Distal,intron-Proximal4.260294.25353HepG2TIA1
chr174247629342476364-3'-UTR,CDS,intron-Distal3.219874.48452HepG2FXR2
chr174247716042477202-3'-UTR,CDS,intron-Distal3.768545.42720K562UCHL5
chr174247762642477649-3'-UTR,CDS,intron-Distal3.432603.73423K562UCHL5
chr174255087442550952-3'-UTR,intron-Distal3.904414.49647HepG2RBFOX2
chr174250172042501858-3'-UTR,CDS,intron-Distal,intron-Proximal4.4423521.58303HepG2BCLAF1
chr174247511642475175-3'-UTR,CDS,intron-Distal4.219099.18194HepG2HNRNPK
chr174247722842477299-3'-UTR,CDS,intron-Distal4.580349.14010HepG2BCLAF1
chr174247793142477975-3'-UTR,CDS,intron-Distal3.706116.81385HepG2BCLAF1
chr174247876442478819-3'-UTR,CDS,intron-Distal,intron-Proximal4.113666.29174K562ZNF622
chr174247507642475157-3'-UTR,CDS,intron-Distal3.620753.14501HepG2IGF2BP3
chr174247722842477291-3'-UTR,CDS,intron-Distal5.8005213.64346K562UCHL5
chr174247509842475150-3'-UTR,CDS,intron-Distal4.6295717.54811HepG2PCBP2
chr174247722042477292-3'-UTR,CDS,intron-Distal3.764104.45064HepG2GRWD1
chr174247517642475263-3'-UTR,CDS,intron-Distal4.2946014.77913HepG2PCBP2
chr174254181142541940-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.9669011.30378HepG2BUD13
chr174247659742476660-3'-UTR,CDS,intron-Distal3.096653.69775K562YBX3
chr174247873842478818-3'-UTR,CDS,intron-Distal,intron-Proximal4.0689812.82496HepG2BCLAF1
chr174247787442477916-3'-UTR,CDS,intron-Distal4.744674.71804HepG2HLTF
chr174247837942478432-3'-UTR,CDS,intron-Distal5.194757.73487HepG2BCLAF1
chr174247762342477659-3'-UTR,CDS,intron-Distal3.229625.79905HepG2BCLAF1
chr174247712942477218-3'-UTR,CDS,intron-Distal4.026573.33101HepG2AGGF1
chr174247579342475841-3'-UTR,CDS,intron-Distal3.227143.12654K562SLTM
chr174247517542475237-3'-UTR,CDS,intron-Distal3.023553.89734HepG2HNRNPK
chr174248329642483327-3'-UTR,CDS,intron-Distal4.120823.36385K562UCHL5
chr174247499442475094-3'-UTR,CDS,intron-Distal3.499407.34603K562HNRNPK
chr174251244742512520-3'-UTR,CDS,intron-Distal,intron-Proximal3.825099.42776K562ZNF622
chr174247843342478490-3'-UTR,CDS,intron-Distal3.936563.51664K562RBM15
chr174250176242501861-3'-UTR,CDS,intron-Distal,intron-Proximal3.891168.94272HepG2GRWD1
chr174247573642475780-3'-UTR,CDS,intron-Distal3.383984.41784HepG2GRWD1
chr174247744042477537-3'-UTR,CDS,intron-Distal3.233273.81194K562TRA2A
chr174247499242475135-3'-UTR,CDS,intron-Distal3.9299915.34184HepG2DDX59
chr174247792342478004-3'-UTR,CDS,intron-Distal3.765886.09767K562UCHL5
chr174247508742475116-3'-UTR,CDS,intron-Distal4.470094.87774HepG2HNRNPK
chr174247503042475087-3'-UTR,CDS,intron-Distal5.3745111.12473HepG2HNRNPK
chr174254182942541854-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.8956111.26363K562PRPF8
chr174247499842475051-3'-UTR,CDS,intron-Distal5.007784.55547K562PCBP1
chr174254181042541885-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.7006843.99499HepG2PRPF8
chr174247714042477169-3'-UTR,CDS,intron-Distal3.928553.12746HepG2GRWD1
chr174251384442513903-3'-UTR,CDS,intron-Distal,intron-Proximal4.710026.33775HepG2GRWD1
chr174255099742551061-3'-UTR,intron-Distal,intron-Proximal4.251307.76172HepG2TIAL1
chr174247836342478419-3'-UTR,CDS,intron-Distal3.388995.76403K562UCHL5
chr174250178142501841-3'-UTR,CDS,intron-Distal3.467593.63681K562RBM15
chr174247766842477712-3'-UTR,CDS,intron-Distal3.919027.89209HepG2BCLAF1
chr174247858842478697-3'-UTR,CDS,intron-Distal,intron-Proximal3.198327.65887HepG2GRWD1
chr174247787342477905-3'-UTR,CDS,intron-Distal3.306924.74886HepG2BCLAF1
chr174258061642580724-5'-UTR,CDS,intron-Distal6.2680815.65693K562PRPF8
chr174258068242580721-5'-UTR,CDS,intron-Distal5.1252025.65328HepG2PRPF8
chr174258065442580785-5'-UTR,CDS,intron-Distal,intron-Proximal3.132874.17822HepG2PPIG
chr174255220442552272-5'-UTR,CDS,intron-Distal,intron-Proximal3.551124.52024HepG2PPIG
chr174258076042580799-5'-UTR,intron-Distal,intron-Proximal3.537123.94360HepG2GTF2F1
chr174247295042473025-intron-Distal4.058203.76686K562IGF2BP1
chr174251158442511697-intron-Distal4.8130211.90381HepG2PTBP1
chr174249543842495536-intron-Distal5.7473512.28789HepG2PTBP1
chr174252885842528914-intron-Distal3.885546.59336K562KHSRP
chr174251160942511686-intron-Distal4.706308.05592K562PTBP1
chr174255746542557632-intron-Distal3.492464.70224K562KHSRP
chr174254266642542698-intron-Distal3.198485.47831HepG2QKI
chr174258064942580682-intron-Distal6.2172625.39729HepG2PRPF8
chr174254397942544005-intron-Distal5.0460514.74070HepG2QKI
chr174254168742541741-intron-Distal,intron-Proximal4.425215.07255HepG2KHSRP
chr174251588242515981-intron-Distal,intron-Proximal4.340599.21479HepG2PTBP1
chr174253074542530909-intron-Distal3.045285.89729K562HNRNPL
chr174253640942536438-intron-Distal5.095258.32953HepG2QKI
chr174258015442580340-intron-Distal4.3288610.68324K562PTBP1
chr174253540842535459-intron-Distal3.192537.88986HepG2HNRNPC
chr174253646242536495-intron-Distal3.160075.01093HepG2QKI
chr174254387942543945-intron-Distal4.5538813.94699HepG2QKI
chr174248918442489294-intron-Distal4.018373.58660HepG2ILF3
chr174253389742533991-intron-Distal3.504364.53895HepG2ILF3
chr174254261542542666-intron-Distal5.0544923.37528HepG2QKI
chr174253985842539909-intron-Distal4.185133.45799HepG2U2AF2
chr174252355142523621-intron-Distal3.434274.35223HepG2ILF3
chr174253643842536462-intron-Distal3.606616.82524HepG2QKI
chr174254401642544033-intron-Distal5.296308.71243HepG2QKI
chr174253081842530857-intron-Distal3.768423.64859K562AGGF1
chr174247344242473518-intron-Distal5.400869.20661K562UPF1
chr174258061242580660-intron-Distal3.762053.60408HepG2XPO5
chr174247363542473730-intron-Distal4.1727410.50859K562UPF1
chr174251585142515920-intron-Distal4.395765.07255HepG2KHSRP
chr174247398042474044-intron-Distal4.7535514.69153K562PUM2
chr174256343742563506-intron-Distal3.960699.89654K562CSTF2T
chr174254168042541747-intron-Distal,intron-Proximal4.176913.02181K562PRPF8
chr174254179942541829-intron-Distal,intron-Proximal3.817559.84724K562PRPF8
chr174257114742571229-intron-Distal3.707585.32632HepG2QKI
chr174252875342528858-intron-Distal3.195188.43260K562KHSRP
chr174252005042520142-intron-Distal4.184273.31709K562ILF3
chr174247283942472882-intron-Distal3.801447.06274K562PUM2
chr174254422042544266-intron-Distal6.9128425.49867HepG2QKI
chr174252006442520137-intron-Distal4.081605.68627HepG2ILF3
chr174256344742563502-intron-Distal5.6842310.20949K562FMR1
chr174247453342474571-intron-Distal5.059039.34312K562PUM2
chr174247458442474614-intron-Distal4.203497.70131HepG2PCBP2
chr174256335242563408-intron-Distal3.842653.41398HepG2CSTF2
chr174254283742542904-intron-Distal6.0310512.21592HepG2QKI
chr174252582342525867-intron-Distal4.258554.27936HepG2PTBP1
chr174253074342530857-intron-Distal4.7313120.69843HepG2HNRNPL
chr174258028942580377-intron-Distal3.112183.11118HepG2PRPF4
chr174253661342536689-intron-Distal4.491728.84799HepG2QKI
chr174254328742543353-intron-Distal,intron-Proximal5.0882812.88973HepG2QKI
chr174254348042543536-intron-Distal3.2215210.08112HepG2QKI
chr174254216642542202-intron-Distal4.610344.12401HepG2U2AF2
chr174247289042472938-intron-Distal4.242538.68778K562PUM2
chr174254257442542615-intron-Distal4.6421415.60046HepG2QKI
chr174254248142542534-intron-Distal6.6774226.54039HepG2QKI
chr174249542742495544-intron-Distal5.640089.27567K562PTBP1
chr174257522842575311-intron-Distal3.284584.07077HepG2HNRNPC
chr174254433442544383-intron-Distal,intron-Proximal4.7450316.72652HepG2QKI
chr174256340842563502-intron-Distal4.7356033.95153HepG2CSTF2
chr174253715842537250-intron-Distal4.431894.50052K562HNRNPL
chr174254426642544288-intron-Distal5.6183318.16415HepG2QKI
chr174251905642519109-intron-Distal5.1265210.22952HepG2HNRNPC
chr174254174042541830-intron-Distal,intron-Proximal4.431834.76003K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GPATCH8 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GPATCH8 is not available on ENCORE database.

  • 56 RBPs can affect the levels of GPATCH8.  








The Knockdown/knockout RNA-Seq assay for GPATCH8 is not available on ENCORE database.





56 RBPs can affect the gene expression of GPATCH8 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GPATCH8ENSG00000186566.71771.725102569.63600-0.536404.602303.93880HepG2AKAP1
GPATCH8ENSG00000186566.72715.486403159.87730-0.218702.807002.11670HepG2AUH
GPATCH8ENSG00000186566.71584.465001922.75610-0.279203.133802.04940HepG2YBX3
GPATCH8ENSG00000186566.71226.203301951.06400-0.670109.835008.64000HepG2DDX21
GPATCH8ENSG00000186566.71703.848302217.55130-0.380206.231305.29290HepG2DKC1
GPATCH8ENSG00000186566.71214.540601871.34200-0.6237017.5032015.99620HepG2DNAJC2
GPATCH8ENSG00000186566.71938.293302417.26200-0.318602.553401.76900HepG2EIF4G2
GPATCH8ENSG00000186566.73048.638303628.08700-0.251003.671902.99540HepG2ETF1
GPATCH8ENSG00000186566.72062.308801612.637700.354703.268202.41850HepG2FUBP3
GPATCH8ENSG00000186566.72738.712602232.064600.295002.107401.33680HepG2G3BP2
GPATCH8ENSG00000186566.71472.318901906.06580-0.372503.644102.91690HepG2HNRNPA1
GPATCH8ENSG00000186566.73111.258102681.472500.214402.519601.83410HepG2HNRNPF
GPATCH8ENSG00000186566.71976.947802329.93280-0.237003.640502.87450HepG2HNRNPL
GPATCH8ENSG00000186566.71768.960902106.13950-0.251703.188602.54150HepG2HNRNPU
GPATCH8ENSG00000186566.71641.891002151.34980-0.389908.368907.16090HepG2ILF2
GPATCH8ENSG00000186566.72830.879802267.278600.320202.307101.70670HepG2MAGOH
GPATCH8ENSG00000186566.72951.630402428.138700.281602.471401.32680HepG2NAA15
GPATCH8ENSG00000186566.73197.967502649.115600.271502.032501.38650HepG2NSUN2
GPATCH8ENSG00000186566.72373.178302087.593900.184901.870701.35470HepG2PCBP1
GPATCH8ENSG00000186566.73159.905302758.534100.195902.176801.48350HepG2PRPF4
GPATCH8ENSG00000186566.71768.831902421.10660-0.452903.691103.01380HepG2PUF60
GPATCH8ENSG00000186566.73484.815502300.601500.5990012.5154011.32850HepG2QKI
GPATCH8ENSG00000186566.72471.463603032.38330-0.295103.823803.24060HepG2RBM22
GPATCH8ENSG00000186566.72580.834202201.718800.229102.752602.13740HepG2RECQL
GPATCH8ENSG00000186566.71610.564301875.60340-0.219802.622501.99270HepG2SAFB2
GPATCH8ENSG00000186566.72563.969802211.596700.213202.405401.84840HepG2SF3B4
GPATCH8ENSG00000186566.72681.732302321.469500.208003.025502.29610HepG2SLBP
GPATCH8ENSG00000186566.71799.253802187.25890-0.281704.927704.10930HepG2SMN1
GPATCH8ENSG00000186566.72432.005003424.91930-0.4939014.0388013.14240HepG2SRFBP1
GPATCH8ENSG00000186566.73129.968002308.403500.439209.743808.97890HepG2SRSF1
GPATCH8ENSG00000186566.72202.666401877.988000.230002.851402.29310HepG2SRSF9
GPATCH8ENSG00000186566.71316.705001710.12020-0.377202.252801.63360HepG2SUPV3L1
GPATCH8ENSG00000186566.72445.722301906.544600.359204.086703.07770HepG2TIA1
GPATCH8ENSG00000186566.72674.403503372.70810-0.334706.641305.63460HepG2UPF1
GPATCH8ENSG00000186566.72550.467203709.33580-0.5404019.9478018.81010HepG2ZNF622
GPATCH8ENSG00000186566.71372.404902379.92140-0.7942023.5992022.05560K562AGGF1
GPATCH8ENSG00000186566.72094.623702615.19170-0.320202.788901.80170K562AKAP8
GPATCH8ENSG00000186566.71623.567802476.42050-0.609108.515207.30660K562AKAP8L
GPATCH8ENSG00000186566.75104.786502113.054701.2724036.7347034.79750K562AQR
GPATCH8ENSG00000186566.72138.119502598.36950-0.281303.156002.17710K562ATP5C1
GPATCH8ENSG00000186566.72413.525803126.20810-0.373306.936205.96910K562DDX47
GPATCH8ENSG00000186566.72174.121102664.77820-0.293603.640702.61770K562DKC1
GPATCH8ENSG00000186566.71862.493901173.351600.666509.378307.86360K562EIF4A3
GPATCH8ENSG00000186566.71641.453902356.93050-0.521903.488602.52750K562FIP1L1
GPATCH8ENSG00000186566.71576.497901220.229300.369503.135902.49760K562FXR1
GPATCH8ENSG00000186566.71887.163802264.44380-0.262902.090701.39670K562GPKOW
GPATCH8ENSG00000186566.71797.016202507.27620-0.480505.991704.87580K562GRSF1
GPATCH8ENSG00000186566.71247.744701630.41180-0.385904.010402.71660K562HNRNPA1
GPATCH8ENSG00000186566.72057.285401516.987700.439405.199004.40440K562HNRNPC
GPATCH8ENSG00000186566.71465.810101805.59490-0.300803.225102.26430K562HNRNPU
GPATCH8ENSG00000186566.72251.654803195.69710-0.505103.903202.96210K562HSPD1
GPATCH8ENSG00000186566.71752.535002628.08560-0.584607.978306.39250K562KIF1C
GPATCH8ENSG00000186566.71858.123702515.73710-0.437104.243802.82990K562MAK16
GPATCH8ENSG00000186566.71593.808702063.61760-0.372702.186201.42230K562NAA15
GPATCH8ENSG00000186566.71679.527402675.37710-0.671706.349405.02000K562PPIG
GPATCH8ENSG00000186566.71067.033002455.89840-1.2026026.8162025.11740K562PUS1
GPATCH8ENSG00000186566.71569.710402392.92880-0.6083011.6830010.47490K562RBM15
GPATCH8ENSG00000186566.72362.493102662.44280-0.172402.133101.30210K562SRPK2
GPATCH8ENSG00000186566.72054.493601509.139700.445005.463304.47610K562SRSF1
GPATCH8ENSG00000186566.71357.973101091.772800.314702.485001.49470K562SRSF4
GPATCH8ENSG00000186566.71529.498801066.406300.520207.137705.85590K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GPATCH8 is not available on ENCORE database.





4 RBPs can affect the splicing of GPATCH8 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGPATCH8ENSG00000186566.7chr17-425521964255227142513845425139134258069342580771-0.117000.004840.04526excludedK562AQR
SEGPATCH8ENSG00000186566.7chr17-425017164250186042483288424834194251243242512519-0.125000.000250.00374excludedK562AQR
SEGPATCH8ENSG00000186566.7chr17-4254446442544482425418394254191242552196425522710.170000.000390.04146includedHepG2SRSF7
SEGPATCH8ENSG00000186566.7chr17-4254446442544482425418394254191242552196425522710.273000.007180.09154includedK562HNRNPC
A3SSGPATCH8ENSG00000186566.7chr17-4251243242512573425124324251251942513845425139130.077000.000800.00570longerK562AQR
A3SSGPATCH8ENSG00000186566.7chr17-4250171642501908425017164250186042512432425125190.071000.011730.06057longerK562AQR
A3SSGPATCH8ENSG00000186566.7chr17-4248328842483466424832884248341942501716425018980.091000.000030.00028longerK562AQR
MXEGPATCH8ENSG00000186566.7chr17-4248328842483419425017164250186042472651424788214251243242512519-0.105000.005060.030732includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GPATCH8 is not avaliable on ENCORE database.