GNA12

General Information

Gene Name       : GNA12
Gene ID             : ENSG00000146535.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GNA12)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GNA12ENSG00000146535.138.2321.2014.71ENCSR000AEF
HepG2GNA12ENSG00000146535.1334.5022.8728.69ENCSR985KAT
K562GNA12ENSG00000146535.1314.9413.0514.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GNA12 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GNA12 RNA is bound by 21 proteins.  







eCLIP assay for GNA12 is not avaliable on ENCORE database.





21 proteins are bound to GNA12 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr727706822770744-3'-UTR,intron-Distal3.504593.63681K562RBM15
chr727700952770112-3'-UTR,intron-Distal3.819243.19539K562YBX3
chr727701212770197-3'-UTR,intron-Distal4.027283.18462K562IGF2BP2
chr727692652769359-3'-UTR,intron-Distal,intron-Proximal3.519536.45914HepG2AKAP1
chr727687572768857-3'-UTR,intron-Distal4.016169.04309K562UPF1
chr727706832770738-3'-UTR,intron-Distal4.067983.07786HepG2UPF1
chr727701202770199-3'-UTR,intron-Distal4.068173.08342HepG2AKAP1
chr727703352770403-3'-UTR,intron-Distal,intron-Proximal3.9507411.98292HepG2QKI
chr727701832770214-3'-UTR,intron-Distal4.128764.19989HepG2UPF1
chr727702682770371-3'-UTR,intron-Distal,intron-Proximal3.8027212.56050HepG2UPF1
chr727702652770325-3'-UTR,intron-Distal3.844363.39858K562IGF2BP2
chr727692702769361-3'-UTR,intron-Distal,intron-Proximal4.472229.57801HepG2UPF1
chr727702952770402-3'-UTR,intron-Distal,intron-Proximal3.320927.70386K562QKI
chr727702732770361-3'-UTR,intron-Distal,intron-Proximal3.286075.47731HepG2AKAP1
chr727685332768608-3'-UTR,intron-Distal3.056563.69775K562YBX3
chr727702642770335-3'-UTR,intron-Distal3.412849.96718HepG2QKI
chr727687612768850-3'-UTR,intron-Distal3.665173.47114HepG2UPF1
chr727700372770110-3'-UTR,intron-Distal3.266194.14493HepG2UPF1
chr727701142770189-3'-UTR,intron-Distal3.609835.67957K562UPF1
chr728837232883830-5'-UTR,CDS,intron-Distal,intron-Proximal4.042776.86497HepG2UPF1
chr728837092883845-5'-UTR,CDS,intron-Distal,intron-Proximal3.446054.57030HepG2FTO
chr728839062883938-5'-UTR,intron-Distal4.098029.76063HepG2DDX3X
chr728838352883896-5'-UTR,intron-Distal4.5371549.49801HepG2DDX3X
chr728837942883835-5'-UTR,CDS,intron-Distal4.8658928.91808HepG2DDX3X
chr728836242883667-5'-UTR,CDS,intron-Distal,intron-Proximal4.2297413.08702HepG2DDX3X
chr727713502771444-CDS,intron-Distal4.250396.02363HepG2U2AF2
chr728836812883794-CDS,intron-Distal,intron-Proximal5.5911774.55427HepG2DDX3X
chr727730372773111-CDS,intron-Distal,intron-Proximal4.878236.59451HepG2PRPF8
chr727711822771248-CDS,intron-Distal3.606327.52317HepG2GRWD1
chr728508692851058-intron-Distal3.426893.42785HepG2HNRNPM
chr727898592789950-intron-Distal4.567375.72853HepG2HNRNPM
chr728768912877046-intron-Distal3.453919.49454HepG2SUGP2
chr728773402877370-intron-Distal3.920213.79098HepG2SUGP2
chr727787012778781-intron-Distal3.273693.12654K562SLTM
chr728645362864572-intron-Distal4.132613.86368HepG2HNRNPM
chr728638102863866-intron-Distal3.492735.94249HepG2HNRNPM
chr728816962881774-intron-Distal4.602375.04769HepG2PTBP1
chr728733872873440-intron-Distal4.712135.94008HepG2HNRNPM
chr728267262826793-intron-Distal3.552384.61500HepG2HNRNPM
chr728325742832643-intron-Distal4.288133.27946HepG2HNRNPM
chr728769022877036-intron-Distal4.737445.15027HepG2MATR3
chr728012412801283-intron-Distal4.146716.92280HepG2HNRNPM
chr728015882801657-intron-Distal5.035516.96728HepG2HNRNPM
chr728771372877178-intron-Distal4.190054.03915HepG2SUGP2
chr728758222875899-intron-Distal3.962356.77642HepG2SUGP2
chr728760942876167-intron-Distal3.073546.59727HepG2SUGP2
chr728009782801079-intron-Distal3.976273.28264K562YWHAG
chr728266232826671-intron-Distal3.358863.39857HepG2HNRNPM
chr728815832881679-intron-Distal5.2695815.30834HepG2PTBP1
chr727999932800040-intron-Distal4.616155.68226HepG2HNRNPM
chr728644532864504-intron-Distal4.657926.08412HepG2HNRNPM
chr727897032789859-intron-Distal5.326447.87558HepG2HNRNPM
chr728816032881785-intron-Distal6.1855614.59132K562PTBP1
chr728786932878775-intron-Distal4.300594.61500HepG2HNRNPM
chr728815882881667-intron-Distal4.477613.12827HepG2U2AF2
chr728320392832174-intron-Distal3.253093.19398HepG2XPO5
chr728815632881667-intron-Distal5.290468.44886HepG2PCBP2
chr728007962800869-intron-Distal3.103713.77382HepG2HNRNPM
chr728649152864955-intron-Distal3.552384.61500HepG2HNRNPM
chr728759222875974-intron-Distal3.799464.81844HepG2SUGP2
chr727932792793357-intron-Distal3.226343.34034HepG2HLTF
chr728759152875976-intron-Distal4.133213.78432HepG2MATR3
chr728028072802880-intron-Distal,intron-Proximal4.033664.89657K562EIF4G2
chr727998722799931-intron-Distal3.521414.38996HepG2HNRNPM
chr728663842866466-intron-Distal5.039217.06641HepG2PCBP2
chr728645722864643-intron-Distal4.770426.19745HepG2HNRNPM
chr728638902863912-intron-Distal3.982413.60235HepG2HNRNPM
chr727897492789841-intron-Distal4.304703.53404K562HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GNA12 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GNA12 is not available on ENCORE database.

  • 73 RBPs can affect the levels of GNA12.  








The Knockdown/knockout RNA-Seq assay for GNA12 is not available on ENCORE database.





73 RBPs can affect the gene expression of GNA12 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GNA12ENSG00000146535.91447.994601809.20210-0.321302.206301.36080HepG2ABCF1
GNA12ENSG00000146535.91201.093301704.48650-0.505003.228302.10820HepG2AKAP8
GNA12ENSG00000146535.92816.458502221.472600.342302.634201.86830HepG2ASCC1
GNA12ENSG00000146535.91824.244101385.756000.396503.677002.99820HepG2BOP1
GNA12ENSG00000146535.91140.365901456.69500-0.353204.403003.62460HepG2CELF1
GNA12ENSG00000146535.92141.796501566.441800.451209.791508.53440HepG2DAZAP1
GNA12ENSG00000146535.91262.737001007.424900.325803.186901.94870HepG2DDX1
GNA12ENSG00000146535.92518.005401671.917900.590707.989505.90780HepG2DDX47
GNA12ENSG00000146535.91196.861001471.80980-0.298303.418602.67650HepG2DKC1
GNA12ENSG00000146535.91274.63760987.812800.367703.041302.30910HepG2DNAJC21
GNA12ENSG00000146535.91241.14350979.207000.341904.885004.05790HepG2DNAJC2
GNA12ENSG00000146535.91279.04470936.422600.449703.069202.12150HepG2EIF3D
GNA12ENSG00000146535.93113.177302285.228700.445902.886202.18460HepG2EIF4B
GNA12ENSG00000146535.91955.811701545.272900.339802.856302.00780HepG2EIF4G1
GNA12ENSG00000146535.91383.124102619.93840-0.9216032.9943031.32160HepG2ETF1
GNA12ENSG00000146535.91222.275901560.06780-0.352003.235802.38980HepG2FUBP3
GNA12ENSG00000146535.91087.758401468.69920-0.433206.773705.33020HepG2HDGF
GNA12ENSG00000146535.91349.01270997.277600.435702.642902.00880HepG2HNRNPA1
GNA12ENSG00000146535.91952.498501604.182300.283403.780302.95410HepG2HNRNPF
GNA12ENSG00000146535.91820.924202224.46820-0.288802.148601.52760HepG2HNRNPK
GNA12ENSG00000146535.91925.077401579.669500.285202.851202.11630HepG2IGF2BP1
GNA12ENSG00000146535.93005.758402232.969200.428703.938003.14620HepG2IGF2BP2
GNA12ENSG00000146535.91329.927401125.638300.240502.603101.88980HepG2ILF2
GNA12ENSG00000146535.9813.619801080.44530-0.409203.316601.52750HepG2CCAR2
GNA12ENSG00000146535.93094.737102014.570900.619205.565604.37300HepG2LARP4
GNA12ENSG00000146535.91723.532302368.95930-0.458904.039703.24820HepG2MAGOH
GNA12ENSG00000146535.91335.405602382.21360-0.8350010.419409.25570HepG2MATR3
GNA12ENSG00000146535.91781.103802438.32450-0.453103.801503.06450HepG2NCBP2
GNA12ENSG00000146535.92503.571401758.318700.509703.401301.80750HepG2NKRF
GNA12ENSG00000146535.92074.653501553.273100.417505.422304.36180HepG2NOL12
GNA12ENSG00000146535.9865.926501220.30160-0.494904.492903.54450HepG2NSUN2
GNA12ENSG00000146535.92273.050601128.612601.010008.464806.86950HepG2PABPC1
GNA12ENSG00000146535.91341.99010982.879100.449206.002104.94980HepG2PPIL4
GNA12ENSG00000146535.91551.302701312.552300.241002.427001.69720HepG2PRPF4
GNA12ENSG00000146535.92387.493401573.903800.6010018.8008017.53450HepG2PUM1
GNA12ENSG00000146535.92148.003901566.940500.454909.580308.54970HepG2PUS1
GNA12ENSG00000146535.91197.768202373.35120-0.9866034.2447032.79740HepG2NELFE
GNA12ENSG00000146535.91612.386702210.47250-0.455208.609107.61210HepG2RECQL
GNA12ENSG00000146535.92464.387701727.979500.512006.585905.59570HepG2RPLP0
GNA12ENSG00000146535.91121.37970911.216400.299302.135101.58830HepG2RPS19
GNA12ENSG00000146535.91212.95300981.346800.305603.665802.94310HepG2SAFB2
GNA12ENSG00000146535.91571.760602011.41750-0.355802.053601.47170HepG2SF3A3
GNA12ENSG00000146535.91762.591601362.156100.371703.185102.42990HepG2SF3B1
GNA12ENSG00000146535.91832.461402220.27330-0.277003.703003.03320HepG2SF3B4
GNA12ENSG00000146535.91868.651501421.583800.394407.200306.15240HepG2SLBP
GNA12ENSG00000146535.9930.546701144.37760-0.298403.075702.40220HepG2SMN1
GNA12ENSG00000146535.91640.952801070.396500.616304.764103.47560HepG2SMNDC1
GNA12ENSG00000146535.91010.594901515.64520-0.584703.648502.74710HepG2SNRNP70
GNA12ENSG00000146535.91617.209702317.49360-0.5191011.7131010.88390HepG2SRSF1
GNA12ENSG00000146535.91688.179501463.893900.205601.849801.32370HepG2SRSF5
GNA12ENSG00000146535.91895.967201576.028900.266503.427502.66440HepG2SRSF7
GNA12ENSG00000146535.91358.949801885.41220-0.472409.321508.41320HepG2SRSF9
GNA12ENSG00000146535.91759.285402147.47030-0.287603.946603.35790HepG2SSB
GNA12ENSG00000146535.92135.348801664.896400.358906.134105.27520HepG2SUCLG1
GNA12ENSG00000146535.9766.701902083.07850-1.4420055.0243052.94460HepG2TAF15
GNA12ENSG00000146535.91031.641201341.47850-0.378902.986002.23660HepG2TARDBP
GNA12ENSG00000146535.91262.360101080.369400.224502.141401.63300HepG2TRIM56
GNA12ENSG00000146535.92184.122501562.612100.483004.764203.95300HepG2U2AF1
GNA12ENSG00000146535.91945.104201533.123600.343302.242201.49300HepG2UBE2L3
GNA12ENSG00000146535.91324.819001783.81730-0.429207.786206.71060HepG2UPF1
GNA12ENSG00000146535.91510.572401295.355800.221602.404201.77230HepG2ZC3H8
GNA12ENSG00000146535.92632.464401961.861100.4241010.881009.97370HepG2ZNF622
GNA12ENSG00000146535.91328.516601703.81130-0.358904.057402.86810K562CELF1
GNA12ENSG00000146535.9838.45520664.474200.335402.456401.47720K562DDX3X
GNA12ENSG00000146535.91077.85180907.446900.248201.975901.34990K562EIF2S2
GNA12ENSG00000146535.9879.82150585.830000.586604.118202.82370K562EIF3D
GNA12ENSG00000146535.9418.35670632.91410-0.597304.371202.90080K562FKBP4
GNA12ENSG00000146535.9198.19040392.40170-0.985406.934705.70290K562G3BP2
GNA12ENSG00000146535.9488.84750728.64970-0.575805.229004.43210K562HNRNPC
GNA12ENSG00000146535.9805.325301056.99850-0.392303.531802.52170K562HNRNPU
GNA12ENSG00000146535.9898.29740626.749100.519202.339501.41850K562IGF2BP2
GNA12ENSG00000146535.9820.17430658.262500.317202.144001.40010K562MAGOH
GNA12ENSG00000146535.9831.689801008.15910-0.277603.055002.27400K562NSUN2
GNA12ENSG00000146535.9615.89370791.19430-0.361402.757901.95750K562POLR2G
GNA12ENSG00000146535.9833.13310639.575100.381302.476301.84220K562PTBP1
GNA12ENSG00000146535.9798.51370994.78250-0.317102.933402.09630K562SF3A3
GNA12ENSG00000146535.9230.76040385.18500-0.739203.201801.59070K562TAF15
GNA12ENSG00000146535.9796.54100634.507000.328001.991501.38440K562TARDBP
GNA12ENSG00000146535.9287.81580408.98170-0.506903.050701.37480K562TBRG4
GNA12ENSG00000146535.9815.67260612.080800.414203.404602.48270K562TIA1
GNA12ENSG00000146535.9283.38090392.79990-0.471102.975202.14270K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GNA12 is not available on ENCORE database.





5 RBPs can affect the splicing of GNA12 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGNA12ENSG00000146535.9chr7-277308427731352767745277138428345612834777-0.105000.001700.04748excludedK562AKAP8L
SEGNA12ENSG00000146535.9chr7-277308427731352767745277138428345612834777-0.188000.000010.00021excludedK562PUS1
SEGNA12ENSG00000146535.9chr7-2878706287875728345612834777288348628839580.077000.000660.01824includedHepG2SRSF1
SEGNA12ENSG00000146535.9chr7-277308427731352767745277138428345612834777-0.267000.000830.01709excludedK562U2AF2
SEGNA12ENSG00000146535.9chr7-277308427731352767745277138428345612834777-0.135000.000760.02239excludedK562AGGF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GNA12 is not avaliable on ENCORE database.