GBGT1

General Information

Gene Name       : GBGT1
Gene ID             : ENSG00000148288.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GBGT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GBGT1ENSG00000148288.120.210.360.28ENCSR000AEF
HepG2GBGT1ENSG00000148288.120.030.000.01ENCSR985KAT
K562GBGT1ENSG00000148288.1212.8612.6612.76ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GBGT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GBGT1 RNA is bound by 1 proteins.  







eCLIP assay for GBGT1 is not avaliable on ENCORE database.





1 proteins are bound to GBGT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9136031495136031582-intron-Distal,intron-Proximal5.1171610.44900K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GBGT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GBGT1 is not available on ENCORE database.

  • 82 RBPs can affect the levels of GBGT1.  








The Knockdown/knockout RNA-Seq assay for GBGT1 is not available on ENCORE database.





82 RBPs can affect the gene expression of GBGT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GBGT1ENSG00000148288.7185.13980452.08390-1.2880014.1524011.56270K562AARS
GBGT1ENSG00000148288.7922.29150486.688400.9221011.859309.44330K562ABCF1
GBGT1ENSG00000148288.7687.93350284.506401.273707.655404.91240K562ADAR
GBGT1ENSG00000148288.7236.68360326.55790-0.464402.146201.34880K562ATP5C1
GBGT1ENSG00000148288.7876.92120524.299500.7420011.819009.81270K562BCLAF1
GBGT1ENSG00000148288.7376.23930244.102700.624103.588902.59630K562BOP1
GBGT1ENSG00000148288.7570.19190339.043600.749906.030403.87880K562BUD13
GBGT1ENSG00000148288.7958.53150557.958600.780607.574605.08980K562CKAP4
GBGT1ENSG00000148288.71171.31560350.615201.740106.404204.73400K562CNOT7
GBGT1ENSG00000148288.71056.58320575.268100.877008.681206.70790K562CPEB4
GBGT1ENSG00000148288.7690.53780259.527201.4117023.9177021.57960K562CPSF6
GBGT1ENSG00000148288.7735.55700297.821901.3043010.111106.75550K562CPSF7
GBGT1ENSG00000148288.7691.97630397.759100.798708.979406.94510K562CSTF2
GBGT1ENSG00000148288.71797.44330915.191700.9737022.4046019.98540K562CELF1
GBGT1ENSG00000148288.7169.78230326.69590-0.944304.166601.84670K562DAZAP1
GBGT1ENSG00000148288.7318.54640595.27870-0.9021012.8345011.53970K562DDX47
GBGT1ENSG00000148288.7190.41830507.62770-1.414604.719103.00650K562EEF2
GBGT1ENSG00000148288.7232.77760524.69990-1.172503.541202.35740K562EIF3D
GBGT1ENSG00000148288.785.78290164.25270-0.937204.495203.49140K562EIF3G
GBGT1ENSG00000148288.7531.83260313.924400.760505.904004.71460K562EIF4A3
GBGT1ENSG00000148288.7528.14050744.41770-0.495204.614203.41380K562EIF4G2
GBGT1ENSG00000148288.71105.16640402.609301.4567016.8408013.83320K562EXOSC5
GBGT1ENSG00000148288.7383.66740264.109200.538602.960202.07480K562FMR1
GBGT1ENSG00000148288.7360.05090223.876600.685404.081002.95370K562FTO
GBGT1ENSG00000148288.7204.90660326.46530-0.672003.531902.86110K562FXR1
GBGT1ENSG00000148288.745.48380147.79780-1.700208.857407.44460K562G3BP2
GBGT1ENSG00000148288.7899.41390491.594000.871406.327704.17980K562GEMIN5
GBGT1ENSG00000148288.7920.66300247.765301.8936015.5468013.63280K562GPKOW
GBGT1ENSG00000148288.71638.72410599.095001.4516028.8324026.30010K562GRSF1
GBGT1ENSG00000148288.7659.47540429.894700.617205.382702.62550K562GRWD1
GBGT1ENSG00000148288.7898.35160328.317901.4521011.645408.77230K562HNRNPAB
GBGT1ENSG00000148288.71515.40670494.480101.6156029.1242027.27430K562HNRNPC
GBGT1ENSG00000148288.7279.40880423.59090-0.600304.543802.13080K562HNRNPH1
GBGT1ENSG00000148288.71077.50040537.965201.002007.021705.25890K562HNRNPL
GBGT1ENSG00000148288.7192.89420287.84130-0.577502.552301.66090K562HNRNPM
GBGT1ENSG00000148288.7644.58670320.679901.007103.905902.19860K562ILF2
GBGT1ENSG00000148288.7518.11640281.223000.881503.249901.63570K562KHDRBS1
GBGT1ENSG00000148288.7195.57600330.36510-0.756304.736203.60520K562KIF1C
GBGT1ENSG00000148288.7486.81430211.611101.201905.394404.03470K562KRR1
GBGT1ENSG00000148288.7232.53810479.09030-1.0428011.131108.27650K562LARP7
GBGT1ENSG00000148288.7339.23610501.69380-0.564503.827302.03900K562LIN28B
GBGT1ENSG00000148288.7615.24340241.854701.3469019.2789016.89910K562METAP2
GBGT1ENSG00000148288.7799.06400519.146700.622105.301004.20620K562MTPAP
GBGT1ENSG00000148288.7147.06320259.39960-0.818703.804402.72600K562NAA15
GBGT1ENSG00000148288.7172.32590313.49480-0.863306.563704.70180K562NCBP2
GBGT1ENSG00000148288.71664.09960576.861501.5283076.9740074.01320K562NSUN2
GBGT1ENSG00000148288.7659.76410279.432301.239408.551805.00870K562PARN
GBGT1ENSG00000148288.7315.68910512.11580-0.698004.900003.79520K562PCBP3
GBGT1ENSG00000148288.7209.33630392.79460-0.908008.346506.98060K562POLR2G
GBGT1ENSG00000148288.7774.54270397.267900.963109.618807.83170K562PPIG
GBGT1ENSG00000148288.7141.24540477.13260-1.756206.484605.33460K562PRPF8
GBGT1ENSG00000148288.7800.96970443.376600.853105.033103.76530K562PSIP1
GBGT1ENSG00000148288.71329.74140846.491500.6515011.339409.39160K562PUM2
GBGT1ENSG00000148288.7815.54490203.843902.0002030.4326027.49050K562RBM22
GBGT1ENSG00000148288.7176.53110485.81670-1.460505.315804.18040K562RPS19
GBGT1ENSG00000148288.7131.50850307.00730-1.223108.985907.06000K562RPS3
GBGT1ENSG00000148288.7256.15210350.03870-0.450502.312101.32800K562SAFB
GBGT1ENSG00000148288.7691.66840319.474401.114305.359503.11380K562SBDS
GBGT1ENSG00000148288.7203.29580361.87750-0.831906.202104.06730K562SDAD1
GBGT1ENSG00000148288.71415.61820569.151301.3144039.4814036.88740K562SF3A3
GBGT1ENSG00000148288.7410.94490196.194701.066604.797902.89250K562SFPQ
GBGT1ENSG00000148288.7632.92980306.779801.044703.461202.02940K562SLBP
GBGT1ENSG00000148288.7402.97600583.10210-0.533105.617604.34470K562SRPK2
GBGT1ENSG00000148288.71396.46260889.140400.651206.123904.37510K562SRSF7
GBGT1ENSG00000148288.7848.30600312.708201.4397010.249307.33840K562STIP1
GBGT1ENSG00000148288.7738.33220461.616100.677503.000201.93950K562SUPV3L1
GBGT1ENSG00000148288.7267.69680394.00490-0.557603.854302.88340K562SYNCRIP
GBGT1ENSG00000148288.7350.27070211.036600.730903.200702.44030K562TARDBP
GBGT1ENSG00000148288.781.18030154.09430-0.924603.876301.96770K562TBRG4
GBGT1ENSG00000148288.7605.92450426.440500.506702.949601.98140K562TIAL1
GBGT1ENSG00000148288.7728.61260453.163400.685002.207901.37660K562TRIM56
GBGT1ENSG00000148288.7623.70720409.136400.608204.837002.88530K562TRIP6
GBGT1ENSG00000148288.7225.12880372.31860-0.725803.733201.65030K562TRNAU1AP
GBGT1ENSG00000148288.779.01280143.30880-0.859003.186802.00100K562U2AF1
GBGT1ENSG00000148288.791.90400147.99220-0.687302.722401.92410K562U2AF2
GBGT1ENSG00000148288.71651.07020915.676000.8504015.3005012.49760K562UBE2L3
GBGT1ENSG00000148288.71629.76050611.655001.4138032.3219030.18370K562UPF1
GBGT1ENSG00000148288.7798.79340523.379400.609902.868601.97570K562WDR3
GBGT1ENSG00000148288.7251.20550544.21590-1.1153018.7755016.85880K562WDR43
GBGT1ENSG00000148288.7837.09780497.950800.749303.305001.94540K562XRN2
GBGT1ENSG00000148288.7876.46940433.473701.015703.456902.47400K562ZC3H8
GBGT1ENSG00000148288.7271.09020418.89300-0.627804.312602.04990K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GBGT1 is not available on ENCORE database.





6 RBPs can affect the splicing of GBGT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGBGT1ENSG00000148288.7chr9-1360297411360299421360287881360296481360305641360306990.118000.000000.00003includedK562HNRNPU
A3SSGBGT1ENSG00000148288.7chr9-1360305641360307361360305641360306991360312871360313640.136000.007340.04049longerK562AQR
RIGBGT1ENSG00000148288.7chr9-136031287136031504136031287136031323136031401136031504-0.278000.001300.06771excludedK562PPIL4
RIGBGT1ENSG00000148288.7chr9-136028339136030699136028339136029629136030564136030699-0.183000.000300.01028excludedK562HNRNPC
RIGBGT1ENSG00000148288.7chr9-1360283391360306991360283391360296481360305641360306990.222000.000000.00002includedK562HNRNPU
RIGBGT1ENSG00000148288.7chr9-1360283391360306991360283391360296481360305641360306990.082000.010860.08273includedK562AKAP8L
RIGBGT1ENSG00000148288.7chr9-1360283391360306991360283391360296481360305641360306990.118000.007830.06683includedK562EFTUD2
MXEGBGT1ENSG00000148288.7chr9-1360314011360314521360354831360356381360312871360313231360368531360369190.130000.003360.052031includedK562HNRNPC
MXEGBGT1ENSG00000148288.7chr9-1360314061360314521360354831360356381360312871360313231360368531360369190.207000.001670.030471includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GBGT1 is not avaliable on ENCORE database.