EMD

General Information

Gene Name       : EMD
Gene ID             : ENSG00000102119.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: EMD)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878EMDENSG00000102119.1040.2556.6748.46ENCSR000AEF
HepG2EMDENSG00000102119.1028.7325.1526.94ENCSR985KAT
K562EMDENSG00000102119.10127.71138.72133.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for EMD is not avaliable on ENCORE database.



Proteins bound to RNA
  • EMD RNA is bound by 28 proteins.  







eCLIP assay for EMD is not avaliable on ENCORE database.





28 proteins are bound to EMD RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX153609715153609754+3'-UTR4.420219.24556K562ZC3H11A
chrX153609366153609413+3'-UTR,CDS4.591315.80053HepG2LARP4
chrX153609714153609773+3'-UTR3.5748214.79871K562UPF1
chrX153609795153609817+3'-UTR3.8849622.90396K562YBX3
chrX153609639153609658+3'-UTR6.0490466.90295K562PABPC4
chrX153609794153609818+3'-UTR5.2442312.37169K562PABPC4
chrX153609649153609714+3'-UTR3.3868620.90236K562UPF1
chrX153609128153609176+3'-UTR,CDS,intron-Proximal3.7144223.99178K562AQR
chrX153609640153609663+3'-UTR3.543566.98894K562LARP4
chrX153609737153609757+3'-UTR4.012029.28421K562DDX55
chrX153609099153609131+3'-UTR,CDS,intron-Proximal3.047457.83059K562BUD13
chrX153609637153609672+3'-UTR5.8790663.30286K562DDX55
chrX153609654153609742+3'-UTR4.459485.49298HepG2ZC3H11A
chrX153609661153609711+3'-UTR3.5485110.41586HepG2SUB1
chrX153609727153609765+3'-UTR6.22607400.00000K562PABPC4
chrX153609132153609186+3'-UTR,CDS,intron-Proximal3.490833.09957HepG2AQR
chrX153609363153609429+3'-UTR,CDS3.678057.49827K562APOBEC3C
chrX153609659153609717+3'-UTR4.6833520.53807K562LSM11
chrX153609375153609482+3'-UTR,CDS3.2839118.13796K562IGF2BP2
chrX153609658153609717+3'-UTR7.33998400.00000K562PABPC4
chrX153609358153609424+3'-UTR,CDS3.0359723.98093K562DDX55
chrX153609302153609436+3'-UTR,CDS4.0917620.03604K562PCBP1
chrX153609720153609752+3'-UTR4.2374210.20251K562METAP2
chrX153609663153609716+3'-UTR3.0079015.38107K562LARP4
chrX153609191153609267+3'-UTR,CDS,intron-Proximal3.8272121.22246K562SF3B4
chrX153609653153609742+3'-UTR4.397794.93188HepG2UPF1
chrX153609486153609603+3'-UTR,CDS3.7210814.28191K562IGF2BP1
chrX153609660153609720+3'-UTR4.899407.20398HepG2LSM11
chrX153609426153609452+3'-UTR,CDS4.039538.40205K562PABPC4
chrX153609672153609683+3'-UTR5.5829668.21237K562DDX55
chrX153609638153609711+3'-UTR4.2345023.18424K562APOBEC3C
chrX153609817153609840+3'-UTR3.6362719.96642K562YBX3
chrX153609635153609738+3'-UTR5.2255319.10316HepG2PABPN1
chrX153609774153609795+3'-UTR4.1039210.18354K562YBX3
chrX153609646153609750+3'-UTR4.4452518.81199HepG2LARP4
chrX153609432153609447+3'-UTR,CDS3.952254.68928K562RBM15
chrX153609053153609128+3'-UTR,CDS,intron-Proximal4.8157742.26906K562AQR
chrX153609683153609716+3'-UTR5.5512165.11547K562DDX55
chrX153609719153609746+3'-UTR3.089953.00430K562XRCC6
chrX153609717153609727+3'-UTR6.45534400.00000K562PABPC4
chrX153609638153609661+3'-UTR6.0093937.65720K562DDX6
chrX153609149153609272+3'-UTR,CDS,intron-Proximal3.274019.45014K562EFTUD2
chrX153609364153609405+3'-UTR,CDS3.0565118.78233K562PABPC4
chrX153609716153609737+3'-UTR4.5458118.11982K562DDX55
chrX153609661153609703+3'-UTR6.05252400.00000K562DDX6
chrX153609549153609553+3'-UTR,CDS4.684965.31712K562METAP2
chrX153609773153609820+3'-UTR4.055323.51768K562NOLC1
chrX153609355153609445+3'-UTR,CDS3.0036710.11556K562METAP2
chrX153609718153609764+3'-UTR4.7213235.36295K562DDX6
chrX153609719153609759+3'-UTR3.230113.75763K562RBFOX2
chrX153609639153609743+3'-UTR5.0878712.81487HepG2DDX55
chrX153609703153609718+3'-UTR6.0880167.35578K562DDX6
chrX153609647153609659+3'-UTR4.348244.98417K562LSM11
chrX153609634153609715+3'-UTR3.6446737.17640K562ZC3H11A
chrX153607700153607778+5'-UTR5.508954.57565HepG2DDX3X
chrX153607778153607837+5'-UTR4.634714.66990HepG2DDX3X
chrX153608619153608651+5'-UTR,CDS3.2422914.13019K562YBX3
chrX153608596153608615+5'-UTR,CDS3.8247614.45532K562YBX3
chrX153607792153607814+5'-UTR4.2903718.10899K562RBM15
chrX153608573153608627+5'-UTR,CDS,intron-Proximal5.265408.16909HepG2AQR
chrX153607814153607838+5'-UTR3.9873115.83923K562RBM15
chrX153608725153608777+5'-UTR,CDS,intron-Proximal5.8403576.73513K562AQR
chrX153608317153608391+5'-UTR,CDS,intron-Proximal4.281364.94878HepG2GRWD1
chrX153608378153608382+5'-UTR,CDS,intron-Proximal5.5541566.95995K562AQR
chrX153608624153608689+5'-UTR,CDS3.003953.21309HepG2GRWD1
chrX153608725153608761+5'-UTR,CDS,intron-Proximal4.550983.93614HepG2AQR
chrX153607789153607860+5'-UTR,CDS3.8762013.45277K562DDX3X
chrX153608572153608624+5'-UTR,CDS,intron-Proximal4.7575436.36798K562AQR
chrX153607616153607687+5'-UTR4.693563.99162HepG2DDX3X
chrX153608714153608779+5'-UTR,CDS,intron-Proximal4.0665718.86407K562BUD13
chrX153607859153607924+CDS,intron-Proximal4.2191329.93633K562YBX3
chrX153607868153607915+CDS,intron-Proximal3.288484.47839K562METAP2
chrX153608792153608848+intron-Distal,intron-Proximal3.206087.32262K562PRPF8
chrX153608428153608490+intron-Distal,intron-Proximal3.064728.15774K562PRPF8
chrX153608808153608849+intron-Distal,intron-Proximal5.372966.26248HepG2PRPF8
chrX153608405153608485+intron-Distal,intron-Proximal3.189486.57157K562DDX24
chrX153608813153608859+intron-Distal,intron-Proximal5.635779.40065K562EFTUD2
chrX153608199153608256+intron-Distal,intron-Proximal3.456127.52067K562EFTUD2
chrX153608805153608846+intron-Distal,intron-Proximal5.8356231.92642K562AQR
chrX153608440153608492+intron-Distal,intron-Proximal3.4161614.49419K562ZNF622
chrX153608779153608838+intron-Distal,intron-Proximal4.0864515.97355K562BUD13
chrX153608209153608270+intron-Proximal3.608506.31501K562SF3B4
chrX153608728153608755+intron-Proximal4.050813.69252K562EFTUD2
chrX153608382153608408+intron-Proximal5.1695778.45731K562AQR
chrX153608387153608422+intron-Proximal3.368327.02084HepG2PRPF8
chrX153608421153608466+intron-Proximal3.5061224.16388K562AQR
chrX153609065153609098+intron-Proximal3.834454.64775K562SF3B4
chrX153608394153608473+intron-Proximal3.454396.57988K562GRWD1
chrX153608408153608421+intron-Proximal5.2663785.18304K562AQR
chrX153608777153608805+intron-Proximal7.4205834.52988K562AQR
chrX153608729153608775+intron-Proximal3.738638.81276K562PRPF8
chrX153608379153608418+intron-Proximal3.550983.09957HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for EMD is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for EMD is not available on ENCORE database.

  • 74 RBPs can affect the levels of EMD.  








The Knockdown/knockout RNA-Seq assay for EMD is not available on ENCORE database.





74 RBPs can affect the gene expression of EMD :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
EMDENSG00000102119.6457.89770362.079000.338602.100301.55590HepG2ACO1
EMDENSG00000102119.6420.88670262.458100.681203.757702.66630HepG2BCCIP
EMDENSG00000102119.6601.30610444.669600.435302.782902.18300HepG2BOP1
EMDENSG00000102119.6233.73680337.42030-0.529703.331302.63900HepG2CELF1
EMDENSG00000102119.6284.14390206.024400.463702.051201.45690HepG2DDX21
EMDENSG00000102119.6571.28720344.123200.731205.074204.26060HepG2DDX6
EMDENSG00000102119.6444.35960346.388200.359202.217501.59990HepG2DKC1
EMDENSG00000102119.6347.84240233.028100.577804.694403.88070HepG2DNAJC2
EMDENSG00000102119.6246.84140171.601100.524402.118401.33910HepG2GEMIN5
EMDENSG00000102119.6493.12950347.651300.504202.891702.20410HepG2IGF2BP2
EMDENSG00000102119.6338.47910267.891900.337302.072501.42710HepG2ILF2
EMDENSG00000102119.61003.91690594.915800.754806.256904.99890HepG2LARP4
EMDENSG00000102119.6332.88200201.709800.722602.673001.63790HepG2METAP2
EMDENSG00000102119.6323.57990489.28880-0.596604.896504.25660HepG2RBM22
EMDENSG00000102119.6479.23440373.425400.359801.854801.39240HepG2NELFE
EMDENSG00000102119.6332.99550187.533400.828305.949005.08800HepG2RPS19
EMDENSG00000102119.6304.29310233.554600.381602.038601.47230HepG2SAFB2
EMDENSG00000102119.6271.71160188.220200.529602.316101.45210HepG2SERBP1
EMDENSG00000102119.6727.02720493.613100.558503.474402.71570HepG2SF3A3
EMDENSG00000102119.6453.04520349.369500.374802.151501.62030HepG2SF3B4
EMDENSG00000102119.6323.33100486.32350-0.588902.703401.93130HepG2SNRNP70
EMDENSG00000102119.6286.49470364.64630-0.348001.883201.47150HepG2SRSF1
EMDENSG00000102119.6405.98770258.551700.650903.808502.49900HepG2STIP1
EMDENSG00000102119.6553.08860256.887201.106309.762708.62070HepG2SUPV3L1
EMDENSG00000102119.6368.18290254.825900.530803.425502.88100HepG2TIAL1
EMDENSG00000102119.6330.87510257.115800.363802.020301.52400HepG2TRIM56
EMDENSG00000102119.6283.33460500.43220-0.820704.976204.14740HepG2U2AF1
EMDENSG00000102119.6366.78260252.877200.536402.611001.90660HepG2XRN2
EMDENSG00000102119.6622.50000481.451800.370603.450302.85850HepG2ZNF622
EMDENSG00000102119.65058.604202989.693900.7586031.3404029.51670K562AGGF1
EMDENSG00000102119.61871.490401550.085400.271703.061901.47190K562AKAP1
EMDENSG00000102119.64355.112603285.375000.406604.008502.77860K562AKAP8
EMDENSG00000102119.66338.614003110.949801.0267013.8337012.20280K562AKAP8L
EMDENSG00000102119.62282.187303157.90070-0.468505.030704.28180K562AQR
EMDENSG00000102119.64926.818903264.206400.5938012.027409.94830K562ATP5C1
EMDENSG00000102119.61315.505301075.163300.291002.654101.62010K562CSTF2
EMDENSG00000102119.62014.785501570.657400.359203.823902.57270K562DDX3X
EMDENSG00000102119.64439.774403347.368400.407406.350804.93910K562DKC1
EMDENSG00000102119.61959.935702336.73760-0.253702.869702.14000K562EIF2S2
EMDENSG00000102119.61351.195301640.96200-0.280302.051201.34150K562EIF4A3
EMDENSG00000102119.61772.816701477.787500.262502.612901.50310K562EIF4B
EMDENSG00000102119.63145.035102303.826500.448905.123503.94610K562FIP1L1
EMDENSG00000102119.61132.349801605.36880-0.503604.465302.97020K562FKBP4
EMDENSG00000102119.61611.056202052.43330-0.349302.498001.63200K562FTO
EMDENSG00000102119.61400.774701706.53360-0.284803.057902.42630K562FXR1
EMDENSG00000102119.61881.910301396.094500.430704.762702.83670K562G3BP1
EMDENSG00000102119.6425.672701115.97800-1.390506.898405.66920K562G3BP2
EMDENSG00000102119.64364.268802272.119300.941604.315602.68490K562HNRNPA2B1
EMDENSG00000102119.61134.115001458.31600-0.362702.538801.36060K562HNRNPK
EMDENSG00000102119.62371.236801895.010000.323302.199201.37340K562HNRNPM
EMDENSG00000102119.62391.584602811.99700-0.233602.443401.60330K562HNRNPU
EMDENSG00000102119.63947.494003123.387700.337703.153002.30640K562HSPD1
EMDENSG00000102119.62231.132901460.621000.611105.465703.81520K562IGF2BP2
EMDENSG00000102119.61883.239001485.487600.342203.013501.75490K562IGF2BP3
EMDENSG00000102119.65201.242203301.363100.6557012.5570010.40320K562KIF1C
EMDENSG00000102119.62502.273901875.308500.416003.848402.05460K562LIN28B
EMDENSG00000102119.64844.334803698.379000.389304.482003.27000K562MBNL1
EMDENSG00000102119.64256.590502592.307500.715406.476604.91480K562NAA15
EMDENSG00000102119.61535.385101174.470900.386502.648701.39580K562NONO
EMDENSG00000102119.64428.042301986.373601.156403.870202.64450K562PABPN1
EMDENSG00000102119.61072.874201365.39000-0.347802.747301.77100K562PCBP2
EMDENSG00000102119.62036.563402418.63760-0.248102.272301.54580K562POLR2G
EMDENSG00000102119.63366.665602615.413900.364203.481802.54440K562PPIG
EMDENSG00000102119.64299.252402360.508600.864903.601201.85970K562PPP1R8
EMDENSG00000102119.62023.603201657.729300.287602.352701.52470K562PSIP1
EMDENSG00000102119.67905.471903084.939201.3575015.0229013.79950K562PUS1
EMDENSG00000102119.66228.253603006.031701.0509013.0076011.71930K562RBM15
EMDENSG00000102119.6700.132301429.51410-1.0298018.5421016.14510K562RBM22
EMDENSG00000102119.61527.389001180.542100.371502.248201.51580K562RPS19
EMDENSG00000102119.61655.418801184.981000.482203.020801.62790K562RRP9
EMDENSG00000102119.63581.495001815.962900.979703.213301.89190K562SF1
EMDENSG00000102119.61542.788902160.94280-0.486103.556902.44810K562SF3B1
EMDENSG00000102119.6569.70630812.72020-0.512504.569102.39570K562SND1
EMDENSG00000102119.61878.667001433.841300.389703.690102.45840K562SRFBP1
EMDENSG00000102119.61828.702901380.637700.405403.742302.48650K562SRSF5
EMDENSG00000102119.61827.533301426.981600.356803.666602.70520K562TIA1
EMDENSG00000102119.61908.763501400.522400.446604.491503.03760K562TRA2A
EMDENSG00000102119.62382.592201693.983700.492005.931104.42910K562TRIM56
EMDENSG00000102119.6728.304801116.22040-0.616002.636101.85120K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for EMD is not available on ENCORE database.





28 RBPs can affect the splicing of EMD :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.219000.000000.00000includedK562SF3B4
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.114000.000010.00866includedK562ZRANB2
RIEMDENSG00000102119.6chrX+153608301153608727153608301153608379153608593153608727-0.067000.000000.00135excludedK562DDX55
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.062000.000060.00872includedK562DROSHA
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.110000.001770.07469includedHepG2BCCIP
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.283000.000000.00000includedK562PUS1
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.072000.001980.02334includedHepG2SF3A3
RIEMDENSG00000102119.6chrX+153608301153608727153608301153608379153608593153608727-0.054000.000000.00032excludedK562EIF4G2
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.090000.000160.02154includedK562SMNDC1
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.092000.000000.00002includedK562NPM1
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.166000.000510.00849includedHepG2PRPF8
RIEMDENSG00000102119.6chrX+153608301153608727153608301153608379153608593153608727-0.092000.000000.00001excludedK562SRSF1
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.079000.000000.00017includedK562HNRNPUL1
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.262000.000000.00000includedK562AGGF1
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.120000.000200.00348includedHepG2QKI
RIEMDENSG00000102119.6chrX+153608301153608727153608301153608379153608593153608727-0.065000.000030.00631excludedK562AARS
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.152000.000000.00015includedK562RBM22
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.218000.000000.00000includedK562AKAP8L
RIEMDENSG00000102119.6chrX+153608301153608727153608301153608379153608593153608727-0.073000.000090.01003excludedK562KHSRP
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.201000.000000.00000includedK562RBM15
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.067000.002490.03416includedK562U2AF2
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.108000.000340.00377includedHepG2SF3B4
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.114000.000080.00158includedHepG2RBM22
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.087000.002020.04309includedHepG2PTBP1
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.170000.000000.00000includedK562UTP18
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.134000.000000.00001includedK562EFTUD2
RIEMDENSG00000102119.6chrX+153608301153608727153608301153608379153608593153608727-0.054000.000330.03090excludedK562SAFB
RIEMDENSG00000102119.6chrX+1536091121536093151536091121536091621536092681536093150.255000.000260.02749includedK562FXR2
RIEMDENSG00000102119.6chrX+1536083011536087271536083011536083791536085931536087270.176000.000000.00000includedK562AQR
RIEMDENSG00000102119.6chrX+153608301153608727153608301153608379153608593153608727-0.061000.001400.02821excludedK562PTBP1
RIEMDENSG00000102119.6chrX+153608301153608727153608301153608379153608593153608727-0.093000.000010.00026excludedK562FXR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for EMD is not avaliable on ENCORE database.