DHX40

General Information

Gene Name       : DHX40
Gene ID             : ENSG00000108406.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: DHX40)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878DHX40ENSG00000108406.911.6710.0510.86ENCSR000AEF
HepG2DHX40ENSG00000108406.918.1226.6022.36ENCSR985KAT
K562DHX40ENSG00000108406.913.6512.5813.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for DHX40 is not avaliable on ENCORE database.



Proteins bound to RNA
  • DHX40 RNA is bound by 4 proteins.  







eCLIP assay for DHX40 is not avaliable on ENCORE database.





4 proteins are bound to DHX40 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr175768466757684760+3'-UTR4.929787.30650K562IGF2BP1
chr175768541357685521+3'-UTR3.099847.42778K562YBX3
chr175768536157685413+3'-UTR3.336927.02805K562YBX3
chr175764299057643129+5'-UTR,CDS,intron-Proximal6.074739.31660K562DDX3X
chr175765462557654681+CDS,intron-Proximal3.546183.01531K562YBX3
chr175768439857684523+CDS3.143325.33987HepG2GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for DHX40 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for DHX40 is not available on ENCORE database.

  • 93 RBPs can affect the levels of DHX40.  








The Knockdown/knockout RNA-Seq assay for DHX40 is not available on ENCORE database.





93 RBPs can affect the gene expression of DHX40 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
DHX40ENSG00000108406.52916.048302051.583500.507204.324803.68040HepG2AKAP1
DHX40ENSG00000108406.5621.28830849.12420-0.450703.484102.82110HepG2BOP1
DHX40ENSG00000108406.51043.01250810.614500.363602.798101.55800HepG2BUD13
DHX40ENSG00000108406.51263.628601612.77980-0.352002.522501.77950HepG2CIRBP
DHX40ENSG00000108406.51569.271501149.980200.448408.541507.49650HepG2CKAP4
DHX40ENSG00000108406.51443.98320808.377400.836906.348105.19040HepG2CNOT7
DHX40ENSG00000108406.5453.26190779.54150-0.782308.056106.93430HepG2CPSF6
DHX40ENSG00000108406.5677.66810890.99590-0.394803.121501.94780HepG2CPSF7
DHX40ENSG00000108406.5471.37690659.16800-0.483803.217202.06230HepG2CSTF2
DHX40ENSG00000108406.51485.637301092.688300.443102.677101.35320HepG2CSTF2T
DHX40ENSG00000108406.51316.495401772.75200-0.429308.497407.30720HepG2DAZAP1
DHX40ENSG00000108406.5860.333301177.54200-0.452804.204303.38560HepG2DDX21
DHX40ENSG00000108406.5796.482301054.86420-0.405303.055902.00030HepG2DDX5
DHX40ENSG00000108406.51324.268601688.06990-0.350202.141601.59120HepG2DDX6
DHX40ENSG00000108406.5866.485901100.46070-0.344903.650902.89230HepG2DKC1
DHX40ENSG00000108406.5897.920801061.81340-0.241901.947801.34680HepG2DNAJC21
DHX40ENSG00000108406.51006.722001622.98670-0.689007.489706.55040HepG2EIF2S1
DHX40ENSG00000108406.5970.171801793.68980-0.8866010.769709.53560HepG2EIF4A3
DHX40ENSG00000108406.5837.242801746.22030-1.0605011.7916010.41980HepG2EIF4B
DHX40ENSG00000108406.51467.297001809.45910-0.302401.961801.37490HepG2FXR1
DHX40ENSG00000108406.51153.409701678.69580-0.541404.719303.86050HepG2G3BP1
DHX40ENSG00000108406.51372.596201781.94540-0.376502.878801.96560HepG2G3BP2
DHX40ENSG00000108406.51338.781001098.141600.285803.180302.13570HepG2HDGF
DHX40ENSG00000108406.5394.40290683.38970-0.793005.735303.69390HepG2HNRNPA0
DHX40ENSG00000108406.5882.948101192.34240-0.433403.788602.98800HepG2HNRNPC
DHX40ENSG00000108406.51221.632601699.46470-0.476304.587503.70730HepG2HNRNPK
DHX40ENSG00000108406.5377.23400843.30170-1.1606015.4025014.08280HepG2HNRNPLL
DHX40ENSG00000108406.5746.39840932.78050-0.321602.652601.94260HepG2IGF2BP1
DHX40ENSG00000108406.5811.061601706.41350-1.0731017.4184015.89790HepG2IGF2BP2
DHX40ENSG00000108406.5689.935001720.50680-1.3183019.4626017.23380HepG2LARP4
DHX40ENSG00000108406.5892.144201810.08950-1.0207015.5429014.04860HepG2MAGOH
DHX40ENSG00000108406.5457.13460884.18600-0.9517013.6239011.97540HepG2MSI2
DHX40ENSG00000108406.51270.902801863.18590-0.551905.032904.18950HepG2NCBP2
DHX40ENSG00000108406.5539.05730963.14760-0.837304.668803.22760HepG2NONO
DHX40ENSG00000108406.5939.29030747.749800.328901.993801.35370HepG2NSUN2
DHX40ENSG00000108406.5463.21660738.80190-0.673503.546402.53170HepG2PABPC1
DHX40ENSG00000108406.5962.853301659.47010-0.785309.469608.15140HepG2PABPC4
DHX40ENSG00000108406.51322.701901706.76950-0.367805.447604.64180HepG2PCBP1
DHX40ENSG00000108406.5835.991701056.45330-0.337703.305602.50620HepG2PPIL4
DHX40ENSG00000108406.5572.11500809.43360-0.500603.186602.32540HepG2PRPF8
DHX40ENSG00000108406.51296.035701678.01050-0.372603.560702.89580HepG2PUF60
DHX40ENSG00000108406.51183.001301781.26430-0.5904015.6166014.44450HepG2PUM1
DHX40ENSG00000108406.51322.143401779.97430-0.429005.357804.43860HepG2PUM2
DHX40ENSG00000108406.5857.445801171.58670-0.450306.772005.88130HepG2PUS1
DHX40ENSG00000108406.51770.835701267.209000.482702.298301.65270HepG2RAVER1
DHX40ENSG00000108406.51576.791301833.49270-0.217602.041901.57850HepG2RBM22
DHX40ENSG00000108406.51183.563901707.03260-0.528406.818705.80050HepG2RBM25
DHX40ENSG00000108406.5858.675101260.69050-0.554003.771502.53140HepG2RCC2
DHX40ENSG00000108406.5746.958401020.51880-0.450204.178703.36670HepG2RPLP0
DHX40ENSG00000108406.5817.242301244.43490-0.606703.843902.73110HepG2RPS10
DHX40ENSG00000108406.5631.83800825.03320-0.384902.873402.24850HepG2RPS19
DHX40ENSG00000108406.5888.475501431.90170-0.688506.132004.96510HepG2RPS2
DHX40ENSG00000108406.51034.518101461.56520-0.498604.074602.76000HepG2RPS5
DHX40ENSG00000108406.51099.67600800.714300.457603.350102.49540HepG2RRP9
DHX40ENSG00000108406.5584.130901054.84100-0.8527016.9255015.52880HepG2SAFB2
DHX40ENSG00000108406.5436.50000828.05100-0.9237010.693808.90070HepG2SERBP1
DHX40ENSG00000108406.5658.390301121.09380-0.767906.316505.27380HepG2SF3A3
DHX40ENSG00000108406.5356.15330834.70090-1.2288018.2901016.64390HepG2SF3B1
DHX40ENSG00000108406.51377.162201808.14750-0.392806.014805.20020HepG2SF3B4
DHX40ENSG00000108406.5979.404401230.16480-0.328903.297502.60560HepG2SMN1
DHX40ENSG00000108406.5956.998601291.04300-0.431902.520501.60880HepG2SMNDC1
DHX40ENSG00000108406.51488.78710928.751500.680704.695103.66580HepG2SNRNP70
DHX40ENSG00000108406.52619.993502070.834900.339306.079905.41650HepG2SRFBP1
DHX40ENSG00000108406.51232.973101656.76940-0.426206.823505.90060HepG2SRSF5
DHX40ENSG00000108406.5729.90310930.67580-0.350603.709602.92120HepG2SRSF7
DHX40ENSG00000108406.5986.047601535.40350-0.6389014.3757013.29490HepG2SRSF9
DHX40ENSG00000108406.51277.537601797.92660-0.493009.705808.85970HepG2SSB
DHX40ENSG00000108406.5562.95180737.69720-0.390002.763701.82320HepG2SUPT6H
DHX40ENSG00000108406.52116.169901696.331900.318903.808003.16780HepG2TAF15
DHX40ENSG00000108406.5444.77310821.96370-0.8860010.412609.14180HepG2TARDBP
DHX40ENSG00000108406.5935.316901558.74600-0.7369012.7844011.01740HepG2TIA1
DHX40ENSG00000108406.5582.493401151.08460-0.9827019.3263018.22320HepG2TIAL1
DHX40ENSG00000108406.5850.661101161.20490-0.449006.420305.62540HepG2TRIM56
DHX40ENSG00000108406.51210.739701639.31590-0.437204.882803.68860HepG2TUFM
DHX40ENSG00000108406.5531.35190934.57300-0.814609.291208.13050HepG2U2AF1
DHX40ENSG00000108406.5564.673501094.75000-0.955102.807701.80980HepG2U2AF2
DHX40ENSG00000108406.51209.074401735.17080-0.521204.495903.41170HepG2UBE2L3
DHX40ENSG00000108406.5434.08310616.97480-0.507203.234102.41480HepG2UCHL5
DHX40ENSG00000108406.5778.606701028.06510-0.401002.326901.65750HepG2XRN2
DHX40ENSG00000108406.5622.483001093.47290-0.8128019.8646018.72960HepG2ZNF622
DHX40ENSG00000108406.51525.415301272.858100.261002.767002.19890K562AGGF1
DHX40ENSG00000108406.52029.797501630.377200.316002.471701.91050K562AQR
DHX40ENSG00000108406.5807.50490627.639500.363402.187901.41870K562BOP1
DHX40ENSG00000108406.5851.081101063.21320-0.321103.222602.02260K562CPEB4
DHX40ENSG00000108406.52704.604702109.271300.358604.141802.93970K562CELF1
DHX40ENSG00000108406.51614.340501100.193000.5531010.489409.31430K562DDX47
DHX40ENSG00000108406.5799.87180582.665100.457003.040701.84630K562FKBP4
DHX40ENSG00000108406.51371.339901071.785900.355501.924101.34620K562G3BP2
DHX40ENSG00000108406.51497.687601068.523900.487006.570505.18520K562HNRNPU
DHX40ENSG00000108406.51041.01470887.325600.230402.280101.59670K562NSUN2
DHX40ENSG00000108406.5440.17580601.37930-0.450202.278401.46560K562PSIP1
DHX40ENSG00000108406.5944.009301382.11420-0.550007.164706.13390K562PTBP1
DHX40ENSG00000108406.52275.547801871.515600.281902.105001.39260K562PUF60
DHX40ENSG00000108406.5996.647101291.89320-0.374302.720601.35850K562RBM34
DHX40ENSG00000108406.5906.19060665.397700.445502.987002.13770K562RPS19
DHX40ENSG00000108406.51009.92610667.912400.596404.091402.46670K562RRP9
DHX40ENSG00000108406.5566.27670750.19460-0.405802.913601.82340K562SRSF4
DHX40ENSG00000108406.51335.298001014.761600.395903.151801.68630K562SSRP1
DHX40ENSG00000108406.51040.972901322.75240-0.345603.144102.26290K562TIA1
DHX40ENSG00000108406.51166.98800940.851900.310703.360502.57310K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for DHX40 is not available on ENCORE database.





5 RBPs can affect the splicing of DHX40 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEDHX40ENSG00000108406.5chr17+5764346957643689576429715764314457643987576440700.306000.000000.00000includedHepG2U2AF1
SEDHX40ENSG00000108406.5chr17+5764346957643689576429715764314457643987576440700.495000.000000.00000includedHepG2U2AF2
SEDHX40ENSG00000108406.5chr17+576635135766359457657057576572405766525657665414-0.070000.006240.05581excludedK562AQR
SEDHX40ENSG00000108406.5chr17+5764346957643689576429715764314457643987576440700.349000.000000.00000includedK562U2AF1
SEDHX40ENSG00000108406.5chr17+5764346957643689576429715764314457643987576440700.483000.000000.00000includedK562U2AF2
SEDHX40ENSG00000108406.5chr17+5764346957643689576429715764314457643987576440700.081000.000010.00047includedK562RBM15
A3SSDHX40ENSG00000108406.5chr17+5768244657682545576824755768254557679882576799770.089000.000000.00001longerK562AQR
A3SSDHX40ENSG00000108406.5chr17+5768279157683035576828065768303557682475576825450.232000.000000.00000longerK562AQR
A5SSDHX40ENSG00000108406.5chr17+5764297157643161576429715764314457643987576440700.124000.001050.04014longerK562PUS1
MXEDHX40ENSG00000108406.5chr17+57643469576436895764398757644070576429715764314457647878576480240.456000.000000.000001includedHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for DHX40 is not avaliable on ENCORE database.