CTD-2207O23.3

General Information

Gene Name : CTD-2207O23.3
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTD-2207O23.3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTD-2207O23.3 is not avaliable on ENCORE database.

Proteins bound to RNA

CTD-2207O23.3 RNA is bound by 16 proteins.

eCLIP assay for CTD-2207O23.3 is not avaliable on ENCORE database.

16 proteins are bound to CTD-2207O23.3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	7531944	7532049	+	CDS,intron-Proximal	3.49873	5.62208	HepG2	PRPF8
chr19	7535008	7535120	+	CDS,intron-Proximal	4.79118	6.20043	HepG2	UPF1
chr19	7515900	7515934	+	intron-Distal	4.76574	6.25174	HepG2	MATR3
chr19	7515255	7515335	+	intron-Distal	5.21529	18.42033	K562	EXOSC5
chr19	7515601	7515640	+	intron-Distal	3.65852	4.61322	HepG2	MATR3
chr19	7515352	7515406	+	intron-Distal	5.57154	11.81112	HepG2	MATR3
chr19	7515358	7515405	+	intron-Distal	4.02275	3.53404	K562	HNRNPM
chr19	7515363	7515407	+	intron-Distal	3.16270	3.63437	HepG2	HNRNPM
chr19	7484301	7484361	+	intron-Distal	3.81603	3.06084	HepG2	HNRNPK
chr19	7515901	7515932	+	intron-Distal	3.87354	3.29248	HepG2	SUGP2
chr19	7515664	7515680	+	intron-Distal	4.85229	17.66436	K562	EXOSC5
chr19	7515807	7515834	+	intron-Distal	3.06047	7.79040	K562	KHSRP
chr19	7477816	7477904	+	intron-Distal	4.08708	4.07991	K562	ILF3
chr19	7460037	7460142	+	5'-UTR,intron-Distal,intron-Proximal	3.84209	3.34184	HepG2	GRWD1
chr19	7476138	7476230	+	intron-Distal	4.73892	6.17200	HepG2	PCBP2
chr19	7515547	7515595	+	intron-Distal	5.53054	13.62873	K562	KHSRP
chr19	7515809	7515859	+	intron-Distal	4.78329	4.48560	K562	EXOSC5
chr19	7518861	7518951	+	intron-Distal	4.02969	3.79026	K562	HNRNPM
chr19	7515237	7515278	+	intron-Distal	3.52369	9.42066	K562	KHSRP
chr19	7477342	7477392	+	intron-Distal	3.05810	3.58557	HepG2	ILF3
chr19	7515834	7515866	+	intron-Distal	3.22091	8.85780	K562	KHSRP
chr19	7515242	7515326	+	intron-Distal	3.90657	6.58367	HepG2	HNRNPM
chr19	7515657	7515706	+	intron-Distal	3.95966	5.96151	K562	DGCR8
chr19	7515364	7515402	+	intron-Distal	3.05354	3.10640	HepG2	SUGP2
chr19	7480242	7480359	+	intron-Distal	3.39716	6.09990	HepG2	HNRNPK
chr19	7515893	7515935	+	intron-Distal	3.80009	7.86844	K562	EXOSC5
chr19	7515661	7515719	+	intron-Distal	4.24325	7.48999	K562	NONO
chr19	7515662	7515706	+	intron-Distal	3.34332	4.12870	K562	PTBP1
chr19	7515278	7515332	+	intron-Distal	3.28243	11.94784	K562	KHSRP
chr19	7515256	7515325	+	intron-Distal	3.39257	5.10681	HepG2	SUGP2
chr19	7515893	7515937	+	intron-Distal,intron-Proximal	4.07709	7.69621	K562	KHSRP
chr19	7515233	7515334	+	intron-Distal	6.73744	28.48036	HepG2	MATR3
chr19	7515658	7515720	+	intron-Distal	5.06269	22.28890	HepG2	MATR3
chr19	7515659	7515713	+	intron-Distal	4.73958	9.80560	K562	DROSHA
chr19	7515659	7515733	+	intron-Distal	4.29348	16.66549	K562	KHSRP
chr19	7515595	7515651	+	intron-Distal	4.04162	14.10910	K562	KHSRP
chr19	7515659	7515724	+	intron-Distal	3.81676	8.44177	HepG2	HNRNPM
chr19	7518866	7518937	+	intron-Distal	3.87841	3.27946	HepG2	HNRNPM
chr19	7515365	7515406	+	intron-Distal	4.91923	14.49454	K562	EXOSC5
chr19	7515657	7515708	+	intron-Distal	3.22765	7.77042	HepG2	SUGP2
chr19	7515660	7515713	+	intron-Distal	3.50034	7.49376	K562	HNRNPM
chr19	7515655	7515726	+	intron-Distal	4.62459	4.75674	K562	MATR3
chr19	7515608	7515648	+	intron-Distal	4.95186	6.73640	K562	EXOSC5
chr19	7515680	7515722	+	intron-Distal	4.27228	17.64761	K562	EXOSC5
chr19	7505368	7505444	+	intron-Proximal	4.88889	4.48002	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CTD-2207O23.3 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for CTD-2207O23.3 is not available on ENCORE database.
79 RBPs can affect the levels of CTD-2207O23.3.

The Knockdown/knockout RNA-Seq assay for CTD-2207O23.3 is not available on ENCORE database.

79 RBPs can affect the gene expression of CTD-2207O23.3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTD-2207O23.3	ENSG00000268861.1	10.74570	53.69490	-2.32100	2.27960	1.37350	HepG2	ADAR
CTD-2207O23.3	ENSG00000268861.1	0.00000	23.73910	-99999.99999	3.74350	2.54130	HepG2	AKAP8
CTD-2207O23.3	ENSG00000268861.1	0.00000	45.64100	-99999.99999	2.66590	1.71290	HepG2	CCAR1
CTD-2207O23.3	ENSG00000268861.1	7.19160	55.05570	-2.93650	3.39380	2.26630	HepG2	YBX3
CTD-2207O23.3	ENSG00000268861.1	4.51810	55.14720	-3.60950	5.05810	3.52610	HepG2	DDX1
CTD-2207O23.3	ENSG00000268861.1	0.00000	54.08130	-99999.99999	8.90120	7.69200	HepG2	DNAJC21
CTD-2207O23.3	ENSG00000268861.1	0.00000	53.57360	-99999.99999	8.95640	7.86400	HepG2	DNAJC2
CTD-2207O23.3	ENSG00000268861.1	32.19480	0.00000	99999.99990	10.58590	9.15330	HepG2	EIF4G1
CTD-2207O23.3	ENSG00000268861.1	52.45250	0.00000	99999.99990	15.74700	13.92230	HepG2	EIF4G2
CTD-2207O23.3	ENSG00000268861.1	0.00000	20.41340	-99999.99999	2.66100	1.57160	HepG2	GRSF1
CTD-2207O23.3	ENSG00000268861.1	45.99430	4.87700	3.23730	4.45750	2.12440	HepG2	GRWD1
CTD-2207O23.3	ENSG00000268861.1	11.69660	54.59910	-2.22280	2.28060	1.68890	HepG2	HNRNPA1
CTD-2207O23.3	ENSG00000268861.1	0.55150	12.04180	-4.44870	2.89160	2.15980	HepG2	HNRNPF
CTD-2207O23.3	ENSG00000268861.1	0.00000	60.32070	-99999.99999	9.62610	8.54910	HepG2	HNRNPU
CTD-2207O23.3	ENSG00000268861.1	0.00000	25.88870	-99999.99999	3.90350	2.43830	HepG2	HSPD1
CTD-2207O23.3	ENSG00000268861.1	0.00000	11.85770	-99999.99999	3.48290	2.67800	HepG2	IGF2BP1
CTD-2207O23.3	ENSG00000268861.1	0.00000	20.94860	-99999.99999	2.75030	1.56330	HepG2	KHDRBS1
CTD-2207O23.3	ENSG00000268861.1	0.00000	48.03390	-99999.99999	2.74340	1.91710	HepG2	LARP4
CTD-2207O23.3	ENSG00000268861.1	42.24190	5.17360	3.02930	5.81410	3.43580	HepG2	LSM11
CTD-2207O23.3	ENSG00000268861.1	50.63910	1.85410	4.77140	4.94840	3.56580	HepG2	METAP2
CTD-2207O23.3	ENSG00000268861.1	0.00000	24.51950	-99999.99999	3.81460	2.14180	HepG2	NKRF
CTD-2207O23.3	ENSG00000268861.1	0.00000	20.14500	-99999.99999	2.64850	1.78420	HepG2	PABPC1
CTD-2207O23.3	ENSG00000268861.1	6.84960	59.71960	-3.12410	4.05770	3.05470	HepG2	PARN
CTD-2207O23.3	ENSG00000268861.1	0.00000	25.11650	-99999.99999	3.88480	1.75990	HepG2	PPIG
CTD-2207O23.3	ENSG00000268861.1	0.00000	53.80300	-99999.99999	8.89610	7.62130	HepG2	PPIL4
CTD-2207O23.3	ENSG00000268861.1	64.12610	0.00000	99999.99990	3.60910	2.84780	HepG2	PUM2
CTD-2207O23.3	ENSG00000268861.1	105.55280	12.41700	3.08750	7.65570	6.51650	HepG2	RAVER1
CTD-2207O23.3	ENSG00000268861.1	61.13800	12.27220	2.31660	4.72820	2.02200	HepG2	RBM34
CTD-2207O23.3	ENSG00000268861.1	0.00000	22.08360	-99999.99999	2.82520	2.01770	HepG2	RPS3A
CTD-2207O23.3	ENSG00000268861.1	0.00000	53.72410	-99999.99999	8.87100	7.81790	HepG2	SAFB2
CTD-2207O23.3	ENSG00000268861.1	0.00000	20.79770	-99999.99999	2.72220	1.42150	HepG2	SART3
CTD-2207O23.3	ENSG00000268861.1	2.22080	75.92450	-5.09540	3.07720	1.53290	HepG2	SFPQ
CTD-2207O23.3	ENSG00000268861.1	0.00000	62.66130	-99999.99999	9.79570	8.70230	HepG2	SMN1
CTD-2207O23.3	ENSG00000268861.1	21.25760	0.00000	99999.99990	2.45850	2.00570	HepG2	SRSF1
CTD-2207O23.3	ENSG00000268861.1	0.00000	11.83100	-99999.99999	3.51180	2.74130	HepG2	SRSF7
CTD-2207O23.3	ENSG00000268861.1	0.00000	25.74840	-99999.99999	3.93660	2.42650	HepG2	SSRP1
CTD-2207O23.3	ENSG00000268861.1	0.00000	19.18450	-99999.99999	2.62100	1.55420	HepG2	STIP1
CTD-2207O23.3	ENSG00000268861.1	64.34520	11.59470	2.47230	4.85950	3.25640	HepG2	SUB1
CTD-2207O23.3	ENSG00000268861.1	0.00000	25.29240	-99999.99999	3.92780	2.67270	HepG2	TBRG4
CTD-2207O23.3	ENSG00000268861.1	0.00000	58.65030	-99999.99999	9.31940	8.49690	HepG2	TIAL1
CTD-2207O23.3	ENSG00000268861.1	0.00000	59.13430	-99999.99999	9.51130	8.56150	HepG2	TRIM56
CTD-2207O23.3	ENSG00000268861.1	0.00000	81.13370	-99999.99999	4.81340	3.48780	HepG2	U2AF2
CTD-2207O23.3	ENSG00000268861.1	0.00000	19.77620	-99999.99999	2.64870	1.58110	HepG2	XPO5
CTD-2207O23.3	ENSG00000268861.1	89.99460	12.15080	2.88870	10.14240	7.83390	HepG2	XRCC5
CTD-2207O23.3	ENSG00000268861.1	15.35140	0.00000	99999.99990	4.42170	2.04120	K562	DAZAP1
CTD-2207O23.3	ENSG00000268861.1	1.21610	31.93140	-4.71470	8.05370	4.94180	K562	DDX28
CTD-2207O23.3	ENSG00000268861.1	0.00000	32.30000	-99999.99999	10.95200	7.99140	K562	DDX51
CTD-2207O23.3	ENSG00000268861.1	4.52420	30.52930	-2.75450	4.67230	1.68000	K562	DDX52
CTD-2207O23.3	ENSG00000268861.1	0.00000	30.96540	-99999.99999	9.92180	7.61090	K562	EEF2
CTD-2207O23.3	ENSG00000268861.1	0.00000	29.92730	-99999.99999	9.54370	7.75450	K562	EFTUD2
CTD-2207O23.3	ENSG00000268861.1	0.00000	32.05760	-99999.99999	10.41490	8.23100	K562	EIF3D
CTD-2207O23.3	ENSG00000268861.1	0.00000	30.00260	-99999.99999	9.32870	6.72860	K562	GEMIN5
CTD-2207O23.3	ENSG00000268861.1	0.98800	37.91400	-5.26200	3.98890	1.84220	K562	HNRNPA0
CTD-2207O23.3	ENSG00000268861.1	0.00000	23.89700	-99999.99999	2.99540	2.37790	K562	HNRNPC
CTD-2207O23.3	ENSG00000268861.1	0.00000	21.37480	-99999.99999	2.73090	1.59500	K562	HNRNPF
CTD-2207O23.3	ENSG00000268861.1	0.00000	16.52160	-99999.99999	2.26820	1.50300	K562	MAGOH
CTD-2207O23.3	ENSG00000268861.1	0.00000	16.47880	-99999.99999	2.27930	1.44860	K562	MATR3
CTD-2207O23.3	ENSG00000268861.1	0.00000	29.45240	-99999.99999	9.24530	6.67850	K562	NONO
CTD-2207O23.3	ENSG00000268861.1	0.00000	23.58230	-99999.99999	2.78490	1.36290	K562	NUSAP1
CTD-2207O23.3	ENSG00000268861.1	0.00000	31.39490	-99999.99999	10.33450	6.87210	K562	PA2G4
CTD-2207O23.3	ENSG00000268861.1	5.21600	40.63780	-2.96180	2.60810	1.42100	K562	PABPC1
CTD-2207O23.3	ENSG00000268861.1	0.00000	28.34710	-99999.99999	8.74600	5.63530	K562	PES1
CTD-2207O23.3	ENSG00000268861.1	0.00000	29.12230	-99999.99999	8.35300	7.04820	K562	PRPF8
CTD-2207O23.3	ENSG00000268861.1	0.00000	21.43580	-99999.99999	2.68930	1.80080	K562	PSIP1
CTD-2207O23.3	ENSG00000268861.1	0.00000	16.05630	-99999.99999	2.23270	1.62610	K562	PTBP1
CTD-2207O23.3	ENSG00000268861.1	0.00000	15.36280	-99999.99999	2.18720	1.44390	K562	RBM22
CTD-2207O23.3	ENSG00000268861.1	0.00000	19.60410	-99999.99999	2.52280	1.57940	K562	RCC2
CTD-2207O23.3	ENSG00000268861.1	0.00000	29.67490	-99999.99999	8.77680	7.30750	K562	RPS19
CTD-2207O23.3	ENSG00000268861.1	0.00000	37.25650	-99999.99999	9.77020	7.76480	K562	RPS3
CTD-2207O23.3	ENSG00000268861.1	0.00000	29.78790	-99999.99999	8.74260	6.45260	K562	RRP9
CTD-2207O23.3	ENSG00000268861.1	0.00000	38.51640	-99999.99999	5.07780	2.90120	K562	SBDS
CTD-2207O23.3	ENSG00000268861.1	0.00000	29.46810	-99999.99999	3.72990	2.73230	K562	SF3B4
CTD-2207O23.3	ENSG00000268861.1	0.00000	18.57930	-99999.99999	2.41410	1.47290	K562	SRFBP1
CTD-2207O23.3	ENSG00000268861.1	0.00000	29.06670	-99999.99999	9.24060	6.14780	K562	SRP68
CTD-2207O23.3	ENSG00000268861.1	0.00000	15.74740	-99999.99999	2.19340	1.55550	K562	SRSF1
CTD-2207O23.3	ENSG00000268861.1	0.00000	35.94680	-99999.99999	9.86030	7.74150	K562	SRSF4
CTD-2207O23.3	ENSG00000268861.1	0.00000	28.21560	-99999.99999	8.45900	6.64210	K562	SUPV3L1
CTD-2207O23.3	ENSG00000268861.1	0.00000	15.92260	-99999.99999	2.22430	1.58550	K562	TARDBP
CTD-2207O23.3	ENSG00000268861.1	0.00000	15.36300	-99999.99999	2.16170	1.44540	K562	TIA1
CTD-2207O23.3	ENSG00000268861.1	0.00000	21.94970	-99999.99999	2.75770	1.81470	K562	TRIM56
CTD-2207O23.3	ENSG00000268861.1	37.12220	0.00000	99999.99990	10.80420	8.25990	K562	UBE2L3
CTD-2207O23.3	ENSG00000268861.1	0.00000	29.85330	-99999.99999	9.34080	7.41040	K562	UCHL5
CTD-2207O23.3	ENSG00000268861.1	0.00000	30.38410	-99999.99999	9.98470	7.30120	K562	XRN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTD-2207O23.3

General Information

Functions

Localization

Domains (AlphaFold: CTD-2207O23.3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTD-2207O23.3 is not avaliable on ENCORE database.

16 proteins are bound to CTD-2207O23.3 RNA:

eCLIP assay for CTD-2207O23.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTD-2207O23.3 is not available on ENCORE database.

79 RBPs can affect the gene expression of CTD-2207O23.3 :

The Knockdown/knockout RNA-Seq assay for CTD-2207O23.3 is not available on ENCORE database.

No RBPs affect the alternative splcing events of CTD-2207O23.3 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for CTD-2207O23.3 is not avaliable on ENCORE database.